Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:03:49 (3741717): wrapper (7.7.26015): starting
11:03:49 (3741717): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:03:49] Arguments: --nthreads 8
[2025-11-26 11:03:49] Threads: 8
[2025-11-26 11:03:49] Checking for CVMFS
[2025-11-26 11:03:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:03:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:03:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:03:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:03:51] 2.13.3.0 11883 30131 391776 153326 3 845 32516231 32935936 40473 16776704 0 153759706 99.601 168338342 34054 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 11:03:51] CVMFS is ok
[2025-11-26 11:03:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:03:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:03:51] Further information can be found at the LHC@home message board.
[2025-11-26 11:03:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:03:51] Checking for apptainer binary...
[2025-11-26 11:03:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:03:51] Running /usr/bin/apptainer --version
[2025-11-26 11:03:51] apptainer version 1.4.4-1.el9
[2025-11-26 11:03:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:03:52] c6-12-29-2.aglt2.org
[2025-11-26 11:03:52] apptainer works
[2025-11-26 11:03:52] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:03:52] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:03:52] Starting ATLAS job with PandaID=6896990017
[2025-11-26 11:03:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:22:10]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:22:10] 2025-11-27 16:20:28,145 | INFO     | monitor loop #4931: job 0:6896990017 is in state 'finished'
[2025-11-27 11:22:10] 2025-11-27 16:20:28,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:22:10] 2025-11-27 16:20:29,016 | INFO     | time since job start (87325s) is within the limit (172800.0s)
[2025-11-27 11:22:10] 2025-11-27 16:20:30,655 | INFO     | monitor loop #4932: job 0:6896990017 is in state 'finished'
[2025-11-27 11:22:10] 2025-11-27 16:20:30,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:22:10] 2025-11-27 16:20:31,023 | INFO     | time since job start (87327s) is within the limit (172800.0s)
[2025-11-27 11:22:10] 2025-11-27 16:20:33,032 | INFO     | time since job start (87329s) is within the limit (172800.0s)
[2025-11-27 11:22:10] 2025-11-27 16:20:33,176 | INFO     | monitor loop #4933: job 0:6896990017 is in state 'finished'
[2025-11-27 11:22:10] 2025-11-27 16:20:33,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:22:10] 2025-11-27 16:20:35,704 | INFO     | monitor loop #4934: job 0:6896990017 is in state 'finished'
[2025-11-27 11:22:10] 2025-11-27 16:20:35,727 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:22:10] 2025-11-27 16:20:36,880 | INFO     | PID=3763721 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:22:10] 2025-11-27 16:20:36,880 | INFO     | .. there are 62 such processes running
[2025-11-27 11:22:10] 2025-11-27 16:20:37,882 | INFO     | time since job start (87333s) is within the limit (172800.0s)
[2025-11-27 11:22:10] 2025-11-27 16:20:38,261 | INFO     | monitor loop #4935: job 0:6896990017 is in state 'finished'
[2025-11-27 11:22:10] 2025-11-27 16:20:38,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:22:10] 2025-11-27 16:20:39,561 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 11:22:10] 2025-11-27 16:20:39,825 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2667.8871666666673
[2025-11-27 11:22:10] 2025-11-27 16:20:39,889 | INFO     | time since job start (87335s) is within the limit (172800.0s)
[2025-11-27 11:22:10] 2025-11-27 16:20:39,987 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896990017/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:22:10] 2025-11-27 16:20:39,988 | INFO     | extracted standard info from prmon json
[2025-11-27 11:22:10] 2025-11-27 16:20:39,988 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:22:10] 2025-11-27 16:20:39,988 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:22:10] 2025-11-27 16:20:40,057 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:22:10] 2025-11-27 16:20:40,066 | INFO     | sum of square deviations: 904923509865.1765
[2025-11-27 11:22:10] 2025-11-27 16:20:40,215 | INFO     | sum of deviations: 4324952922224.204
[2025-11-27 11:22:10] 2025-11-27 16:20:40,216 | INFO     | mean x: 1764216806.3128061
[2025-11-27 11:22:10] 2025-11-27 16:20:40,216 | INFO     | mean y: 2890920.836249125
[2025-11-27 11:22:10] 2025-11-27 16:20:40,216 | INFO     | intersect: -8428931822.984863
[2025-11-27 11:22:10] 2025-11-27 16:20:40,226 | INFO     | chi2: 23.596882039646502
[2025-11-27 11:22:10] 2025-11-27 16:20:40,236 | INFO     | sum of square deviations: 895459670633.3368
[2025-11-27 11:22:10] 2025-11-27 16:20:40,371 | INFO     | sum of deviations: 4880416205913.392
[2025-11-27 11:22:10] 2025-11-27 16:20:40,372 | INFO     | mean x: 1764216653.820927
[2025-11-27 11:22:10] 2025-11-27 16:20:40,372 | INFO     | mean y: 2899869.899578652
[2025-11-27 11:22:10] 2025-11-27 16:20:40,372 | INFO     | intersect: -9612398094.284813
[2025-11-27 11:22:10] 2025-11-27 16:20:40,382 | INFO     | chi2: 19.316868255756006
[2025-11-27 11:22:10] 2025-11-27 16:20:40,382 | INFO     | current chi2=19.316868255756006 (change=18.138047970487772 %)
[2025-11-27 11:22:10] 2025-11-27 16:20:40,382 | INFO     | right removable region: 1423
[2025-11-27 11:22:10] 2025-11-27 16:20:40,384 | INFO     | sum of square deviations: 895457654583.3362
[2025-11-27 11:22:10] 2025-11-27 16:20:40,551 | INFO     | sum of deviations: 3745086561027.9873
[2025-11-27 11:22:10] 2025-11-27 16:20:40,551 | INFO     | mean x: 1764216958.820927
[2025-11-27 11:22:10] 2025-11-27 16:20:40,551 | INFO     | mean y: 2900261.9803370787
[2025-11-27 11:22:10] 2025-11-27 16:20:40,552 | INFO     | intersect: -7375611931.644585
[2025-11-27 11:22:10] 2025-11-27 16:20:40,561 | INFO     | chi2: 19.450754036932466
[2025-11-27 11:22:10] 2025-11-27 16:20:40,562 | INFO     | current chi2=19.450754036932466 (change=17.570660376857774 %)
[2025-11-27 11:22:10] 2025-11-27 16:20:40,562 | INFO     | left removable region: 10
[2025-11-27 11:22:10] 2025-11-27 16:20:40,564 | INFO     | sum of square deviations: 874868007750.6198
[2025-11-27 11:22:10] 2025-11-27 16:20:40,705 | INFO     | sum of deviations: 3891938825206.9897
[2025-11-27 11:22:10] 2025-11-27 16:20:40,705 | INFO     | mean x: 1764216928.338995
[2025-11-27 11:22:10] 2025-11-27 16:20:40,705 | INFO     | mean y: 2918807.4593064403
[2025-11-27 11:22:10] 2025-11-27 16:20:40,705 | INFO     | intersect: -7845378648.454938
[2025-11-27 11:22:10] 2025-11-27 16:20:40,711 | INFO     | chi2: 11.63879587325104
[2025-11-27 11:22:10] 2025-11-27 16:20:40,712 | INFO     | current memory leak: 4.45 B/s (using 1413 data points, chi2=11.64)
[2025-11-27 11:22:10] 2025-11-27 16:20:40,726 | INFO     | could have reported an average CPU frequency of 2653 MHz (51 samples)
[2025-11-27 11:22:10] 2025-11-27 16:20:40,726 | INFO     | ..............................
[2025-11-27 11:22:10] 2025-11-27 16:20:40,726 | INFO     | . Timing measurements:
[2025-11-27 11:22:10] 2025-11-27 16:20:40,726 | INFO     | . get job = 0 s
[2025-11-27 11:22:10] 2025-11-27 16:20:40,726 | INFO     | . initial setup = 5 s
[2025-11-27 11:22:10] 2025-11-27 16:20:40,726 | INFO     | . payload setup = 46 s
[2025-11-27 11:22:10] 2025-11-27 16:20:40,727 | INFO     | . stage-in = 0 s
[2025-11-27 11:22:10] 2025-11-27 16:20:40,727 | INFO     | . payload execution = 87168 s
[2025-11-27 11:22:10] 2025-11-27 16:20:40,727 | INFO     | . stage-out = 11 s
[2025-11-27 11:22:10] 2025-11-27 16:20:40,727 | INFO     | . log creation = 3 s
[2025-11-27 11:22:10] 2025-11-27 16:20:40,727 | INFO     | ..............................
[2025-11-27 11:22:10] 2025-11-27 16:20:41,311 | INFO     | 
[2025-11-27 11:22:10] 2025-11-27 16:20:41,311 | INFO     | job summary report
[2025-11-27 11:22:10] 2025-11-27 16:20:41,311 | INFO     | --------------------------------------------------
[2025-11-27 11:22:10] 2025-11-27 16:20:41,311 | INFO     | PanDA job id: 6896990017
[2025-11-27 11:22:10] 2025-11-27 16:20:41,311 | INFO     | task id: 47556173
[2025-11-27 11:22:10] 2025-11-27 16:20:41,311 | INFO     | errors: (none)
[2025-11-27 11:22:10] 2025-11-27 16:20:41,311 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:22:10] 2025-11-27 16:20:41,311 | INFO     | pilot state: finished 
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | transexitcode: 0
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | exeerrorcode: 0
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | exeerrordiag: 
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | exitcode: 0
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | exitmsg: OK
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | cpuconsumptiontime: 272587 s
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | nevents: 1000
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | neventsw: 0
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | pid: 3797039
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | pgrp: 3797039
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | corecount: 8
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | event service: False
[2025-11-27 11:22:10] 2025-11-27 16:20:41,312 | INFO     | sizes: {0: 2283383, 1: 2284068, 2: 2284068, 3: 2284295, 14: 2284295, 25: 2284323, 34: 2284741, 36: 2284769, 87216: 2349548, 87229: 2358542, 87231: 2358598, 87266: 
[2025-11-27 11:22:10] 2025-11-27 16:20:41,313 | INFO     | --------------------------------------------------
[2025-11-27 11:22:10] 2025-11-27 16:20:41,313 | INFO     | 
[2025-11-27 11:22:10] 2025-11-27 16:20:41,313 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 11:22:10] 2025-11-27 16:20:41,374 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,374 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,375 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,376 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,376 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:22:10] 2025-11-27 16:20:41,376 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,376 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:22:10] 2025-11-27 16:20:41,376 | INFO     | job 6896990017 has completed (purged errors)
[2025-11-27 11:22:10] 2025-11-27 16:20:41,376 | INFO     | overall cleanup function is called
[2025-11-27 11:22:10] 2025-11-27 16:20:42,440 | INFO     | --- collectZombieJob: --- 10, [3797039]
[2025-11-27 11:22:10] 2025-11-27 16:20:42,440 | INFO     | zombie collector waiting for pid 3797039
[2025-11-27 11:22:10] 2025-11-27 16:20:42,440 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:22:10] 2025-11-27 16:20:42,440 | INFO     | collected zombie processes
[2025-11-27 11:22:10] 2025-11-27 16:20:42,440 | INFO     | will attempt to kill all subprocesses of pid=3797039
[2025-11-27 11:22:10] 2025-11-27 16:20:43,506 | INFO     | process IDs to be killed: [3797039] (in reverse order)
[2025-11-27 11:22:10] 2025-11-27 16:20:44,243 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:22:10] 2025-11-27 16:20:44,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:22:10] 2025-11-27 16:20:44,271 | INFO     | did not find any defunct processes belonging to 3797039
[2025-11-27 11:22:10] 2025-11-27 16:20:44,410 | INFO     | did not find any defunct processes belonging to 3797039
[2025-11-27 11:22:10] 2025-11-27 16:20:44,474 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:22:10] 2025-11-27 16:20:44,474 | INFO     | ready for new job
[2025-11-27 11:22:10] 2025-11-27 16:20:44,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:22:10] 2025-11-27 16:20:44,493 | INFO     | ***************************************
[2025-11-27 11:22:10] 2025-11-27 16:20:44,493 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:22:10] 2025-11-27 16:20:44,494 | INFO     | ***************************************
[2025-11-27 11:22:10] 2025-11-27 16:20:44,494 | INFO     | 
[2025-11-27 11:22:10] 2025-11-27 16:20:44,523 | INFO     | architecture information:
[2025-11-27 11:22:10] 2025-11-27 16:20:44,523 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:22:10] 2025-11-27 16:20:44,574 | INFO     | cat /etc/os-release:
[2025-11-27 11:22:10] NAME="CentOS Linux"
[2025-11-27 11:22:10] VERSION="7 (Core)"
[2025-11-27 11:22:10] ID="centos"
[2025-11-27 11:22:10] ID_LIKE="rhel fedora"
[2025-11-27 11:22:10] VERSION_ID="7"
[2025-11-27 11:22:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:22:10] ANSI_COLOR="0;31"
[2025-11-27 11:22:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:22:10] HOME_URL="https://www.centos.org/"
[2025-11-27 11:22:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:22:10] 
[2025-11-27 11:22:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:22:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:22:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:22:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:22:10] 
[2025-11-27 11:22:10] 2025-11-27 16:20:44,574 | INFO     | ***************************************
[2025-11-27 11:22:10] 2025-11-27 16:20:45,078 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 11:22:10] 2025-11-27 16:20:45,184 | INFO     | sufficient remaining disk space (84308656128 B)
[2025-11-27 11:22:10] 2025-11-27 16:20:45,184 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:22:10] 2025-11-27 16:20:45,185 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:22:10] 2025-11-27 16:20:45,185 | INFO     | update_server=False
[2025-11-27 11:22:10] 2025-11-27 16:20:45,185 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:22:10] 2025-11-27 16:20:45,186 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:22:10] 2025-11-27 16:20:45,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:22:10] 2025-11-27 16:20:45,186 | INFO     | aborting loop
[2025-11-27 11:22:10] 2025-11-27 16:20:45,235 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:22:10] 2025-11-27 16:20:45,429 | INFO     | all payload control threads have been joined
[2025-11-27 11:22:10] 2025-11-27 16:20:45,732 | INFO     | all job control threads have been joined
[2025-11-27 11:22:10] 2025-11-27 16:20:46,053 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:22:10] 2025-11-27 16:20:46,191 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:46,193 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:46,290 | INFO     | all data control threads have been joined
[2025-11-27 11:22:10] 2025-11-27 16:20:46,290 | INFO     | [job] validate thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:46,386 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:46,386 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:46,392 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:46,435 | INFO     | [payload] control thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:46,556 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:46,738 | INFO     | [job] control thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:47,059 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:47,242 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:47,299 | INFO     | [data] control thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:47,339 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:47,455 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:47,717 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:20:49,197 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:22:10] 2025-11-27 16:21:14,758 | INFO     | PID=3763721 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:22:10] 2025-11-27 16:21:14,759 | INFO     | .. there are 61 such processes running
[2025-11-27 11:22:10] 2025-11-27 16:21:14,760 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:22:10] 2025-11-27 16:21:14,760 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:22:10] 2025-11-27 16:21:14,760 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:22:10] 2025-11-27 16:21:41,261 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:22:10] 2025-11-27 16:21:41,531 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140198118774592)>', '<ExcThread(monitor, started 140197765297920)>']
[2025-11-27 11:22:10] 2025-11-27 16:21:41,985 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:22:10] 2025-11-27 16:21:41,985 | INFO     | [monitor] control thread has ended
[2025-11-27 11:22:10] 2025-11-27 16:21:46,557 | INFO     | all workflow threads have been joined
[2025-11-27 11:22:10] 2025-11-27 16:21:46,557 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:22:10] 2025-11-27 16:21:46,557 | INFO     | traces error code: 0
[2025-11-27 11:22:10] 2025-11-27 16:21:46,557 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:22:10] 2025-11-27 16:21:48,176 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:22:10] 2025-11-27 16:21:48,193 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:22:10] 2025-11-27 16:21:48,221 [wrapper] pilotpid: 3763721
[2025-11-27 11:22:10] 2025-11-27 16:21:48,229 [wrapper] Pilot exit status: 0
[2025-11-27 11:22:10] 2025-11-27 16:21:48,293 [wrapper] pandaids: 6896990017
[2025-11-27 11:22:10] 2025-11-27 16:21:48,765 [wrapper] cleanup supervisor_pilot 2612492 3763722
[2025-11-27 11:22:10] 2025-11-27 16:21:48,781 [wrapper] Test setup, not cleaning
[2025-11-27 11:22:10] 2025-11-27 16:21:48,790 [wrapper] apfmon messages muted
[2025-11-27 11:22:10] 2025-11-27 16:21:48,803 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:22:10] 2025-11-27 16:21:48,813 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:22:10]  *** Error codes and diagnostics ***
[2025-11-27 11:22:10]     "exeErrorCode": 0,
[2025-11-27 11:22:10]     "exeErrorDiag": "",
[2025-11-27 11:22:10]     "pilotErrorCode": 0,
[2025-11-27 11:22:10]     "pilotErrorDiag": "",
[2025-11-27 11:22:10]  *** Listing of results directory ***
[2025-11-27 11:22:10] total 1321688
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 07:49 pilot3.tar.gz
[2025-11-27 11:22:10] -rwx------. 1 boincer umatlas     36292 Nov 25 08:01 runpilot2-wrapper.sh
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 08:01 queuedata.json
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas       100 Nov 26 11:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:22:10] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 11:03 run_atlas
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas       105 Nov 26 11:03 job.xml
[2025-11-27 11:22:10] -rw-r--r--. 2 boincer umatlas 409129904 Nov 26 11:03 EVNT.47483658._003081.pool.root.1
[2025-11-27 11:22:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 11:03 start_atlas.sh
[2025-11-27 11:22:10] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 11:03 shared
[2025-11-27 11:22:10] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 11:03 input.tar.gz
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas         0 Nov 26 11:03 boinc_lockfile
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 11:03 pandaJob.out
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas        57 Nov 26 11:03 setup.sh.local
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas    991855 Nov 26 11:04 agis_schedconf.cvmfs.json
[2025-11-27 11:22:10] drwx------. 5 boincer umatlas      4096 Nov 26 11:05 pilot3
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:42 boinc_task_state.xml
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas 914174911 Nov 27 11:15 HITS.47556173._000637.pool.root.1
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas      1059 Nov 27 11:19 memory_monitor_summary.json
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas   2444142 Nov 27 11:20 log.47556173._000637.job.log.tgz.1
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 11:20 init_data.xml
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas      8636 Nov 27 11:20 heartbeat.json
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas        95 Nov 27 11:21 pilot_heartbeat.json
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas      4824 Nov 27 11:21 pilotlog.txt
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas  10648326 Nov 27 11:21 log.47556173._000637.job.log.1
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas       353 Nov 27 11:21 output.list
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:21 runtime_log
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas  13107200 Nov 27 11:21 result.tar.gz
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas       662 Nov 27 11:21 V3FLDmwq7h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAOMKDmUWt0zm.diag
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 11:21 runtime_log.err
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:22 wrapper_checkpoint.txt
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:22 boinc_mmap_file
[2025-11-27 11:22:10] -rw-r--r--. 1 boincer umatlas     21900 Nov 27 11:22 stderr.txt
[2025-11-27 11:22:10] HITS file was successfully produced:
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas 914174911 Nov 27 11:15 shared/HITS.pool.root.1
[2025-11-27 11:22:10]  *** Contents of shared directory: ***
[2025-11-27 11:22:10] total 1305700
[2025-11-27 11:22:10] -rw-r--r--. 2 boincer umatlas 409129904 Nov 26 11:03 ATLAS.root_0
[2025-11-27 11:22:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 11:03 start_atlas.sh
[2025-11-27 11:22:10] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 11:03 input.tar.gz
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas 914174911 Nov 27 11:15 HITS.pool.root.1
[2025-11-27 11:22:10] -rw-------. 1 boincer umatlas  13107200 Nov 27 11:21 result.tar.gz
11:22:11 (3741717): run_atlas exited; CPU time 276554.201483
11:22:11 (3741717): called boinc_finish(0)

</stderr_txt>
]]>

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