Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:20:37 (2619730): wrapper (7.7.26015): starting
06:20:37 (2619730): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 06:20:37] Arguments: --nthreads 8
[2025-11-26 06:20:37] Threads: 8
[2025-11-26 06:20:37] Checking for CVMFS
[2025-11-26 06:20:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:20:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:20:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:20:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:20:40] 2.13.3.0 12004 29936 378436 153320 2 315 20903110 32935936 34485 16776704 0 156504587 99.514 183868303 33407 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 06:20:40] CVMFS is ok
[2025-11-26 06:20:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:20:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:20:40] Further information can be found at the LHC@home message board.
[2025-11-26 06:20:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:20:40] Checking for apptainer binary...
[2025-11-26 06:20:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:20:40] Running /usr/bin/apptainer --version
[2025-11-26 06:20:40] apptainer version 1.4.4-1.el9
[2025-11-26 06:20:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:20:40] c6-12-29-4.aglt2.org
[2025-11-26 06:20:40] apptainer works
[2025-11-26 06:20:40] Set ATHENA_PROC_NUMBER=8
[2025-11-26 06:20:40] Set ATHENA_CORE_NUMBER=8
[2025-11-26 06:20:40] Starting ATLAS job with PandaID=6895325978
[2025-11-26 06:20:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:29:12]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:29:12] 2025-11-27 03:28:32,787 | INFO     | monitor loop #3379: job 0:6895325978 is in state 'finished'
[2025-11-26 22:29:12] 2025-11-27 03:28:32,788 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:29:12] 2025-11-27 03:28:33,194 | INFO     | time since job start (58032s) is within the limit (172800.0s)
[2025-11-26 22:29:12] 2025-11-27 03:28:33,721 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 22:29:12] 2025-11-27 03:28:33,762 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2639.6938229166667
[2025-11-26 22:29:12] 2025-11-27 03:28:33,786 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895325978/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:29:12] 2025-11-27 03:28:33,787 | INFO     | extracted standard info from prmon json
[2025-11-26 22:29:12] 2025-11-27 03:28:33,787 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:29:12] 2025-11-27 03:28:33,787 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:29:12] 2025-11-27 03:28:33,803 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:29:12] 2025-11-27 03:28:33,804 | INFO     | sum of square deviations: 265859364307.77286
[2025-11-26 22:29:12] 2025-11-27 03:28:33,862 | INFO     | sum of deviations: 1057843927934.6667
[2025-11-26 22:29:12] 2025-11-27 03:28:33,862 | INFO     | mean x: 1764185126.0484211
[2025-11-26 22:29:12] 2025-11-27 03:28:33,862 | INFO     | mean y: 2915972.3768421053
[2025-11-26 22:29:12] 2025-11-27 03:28:33,862 | INFO     | intersect: -7016707083.602963
[2025-11-26 22:29:12] 2025-11-27 03:28:33,868 | INFO     | chi2: 9.83540327371282
[2025-11-26 22:29:12] 2025-11-27 03:28:33,869 | INFO     | sum of square deviations: 261685274910.53372
[2025-11-26 22:29:12] 2025-11-27 03:28:33,983 | INFO     | sum of deviations: 1371442866643.3113
[2025-11-26 22:29:12] 2025-11-27 03:28:33,983 | INFO     | mean x: 1764184973.5777779
[2025-11-26 22:29:12] 2025-11-27 03:28:33,983 | INFO     | mean y: 2927424.471957672
[2025-11-26 22:29:12] 2025-11-27 03:28:33,983 | INFO     | intersect: -9242831238.40942
[2025-11-26 22:29:12] 2025-11-27 03:28:34,003 | INFO     | chi2: 6.7949769153712785
[2025-11-26 22:29:12] 2025-11-27 03:28:34,004 | INFO     | current chi2=6.7949769153712785 (change=30.91308280635243 %)
[2025-11-26 22:29:12] 2025-11-27 03:28:34,005 | INFO     | sum of square deviations: 257555082311.36176
[2025-11-26 22:29:12] 2025-11-27 03:28:34,256 | INFO     | sum of deviations: 1728897534968.5754
[2025-11-26 22:29:12] 2025-11-27 03:28:34,256 | INFO     | mean x: 1764184821.106383
[2025-11-26 22:29:12] 2025-11-27 03:28:34,256 | INFO     | mean y: 2940623.0542553193
[2025-11-26 22:29:12] 2025-11-27 03:28:34,256 | INFO     | intersect: -11839554431.0814
[2025-11-26 22:29:12] 2025-11-27 03:28:34,257 | INFO     | chi2: 3.046827379674855
[2025-11-26 22:29:12] 2025-11-27 03:28:34,257 | INFO     | current chi2=3.046827379674855 (change=55.16059263155898 %)
[2025-11-26 22:29:12] 2025-11-27 03:28:34,258 | INFO     | sum of square deviations: 253467751328.45364
[2025-11-26 22:29:12] 2025-11-27 03:28:34,320 | INFO     | sum of deviations: 1832809702870.8616
[2025-11-26 22:29:12] 2025-11-27 03:28:34,333 | INFO     | mean x: 1764184668.6192513
[2025-11-26 22:29:12] 2025-11-27 03:28:34,333 | INFO     | mean y: 2944495.4631016045
[2025-11-26 22:29:12] 2025-11-27 03:28:34,333 | INFO     | intersect: -12753766215.681335
[2025-11-26 22:29:12] 2025-11-27 03:28:34,334 | INFO     | chi2: 2.570054985583214
[2025-11-26 22:29:12] 2025-11-27 03:28:34,334 | INFO     | current chi2=2.570054985583214 (change=15.64815904150501 %)
[2025-11-26 22:29:12] 2025-11-27 03:28:34,334 | INFO     | right removable region: 934
[2025-11-26 22:29:12] 2025-11-27 03:28:34,335 | INFO     | sum of square deviations: 261682059600.53342
[2025-11-26 22:29:12] 2025-11-27 03:28:34,400 | INFO     | sum of deviations: 770166231537.0009
[2025-11-26 22:29:12] 2025-11-27 03:28:34,400 | INFO     | mean x: 1764185278.5777779
[2025-11-26 22:29:12] 2025-11-27 03:28:34,401 | INFO     | mean y: 2926468.714285714
[2025-11-26 22:29:12] 2025-11-27 03:28:34,401 | INFO     | intersect: -5189313036.773509
[2025-11-26 22:29:12] 2025-11-27 03:28:34,403 | INFO     | chi2: 7.482954787656627
[2025-11-26 22:29:12] 2025-11-27 03:28:34,404 | INFO     | current chi2=7.482954787656627 (change=23.91817011045806 %)
[2025-11-26 22:29:12] 2025-11-27 03:28:34,404 | INFO     | left removable region: 10
[2025-11-26 22:29:12] 2025-11-27 03:28:34,405 | INFO     | sum of square deviations: 244624430092.29364
[2025-11-26 22:29:12] 2025-11-27 03:28:34,465 | INFO     | sum of deviations: 1494765101369.6978
[2025-11-26 22:29:12] 2025-11-27 03:28:34,476 | INFO     | mean x: 1764184943.17316
[2025-11-26 22:29:12] 2025-11-27 03:28:34,477 | INFO     | mean y: 2958136.1893939395
[2025-11-26 22:29:12] 2025-11-27 03:28:34,477 | INFO     | intersect: -10777003964.988323
[2025-11-26 22:29:12] 2025-11-27 03:28:34,478 | INFO     | chi2: 0.08105689475517164
[2025-11-26 22:29:12] 2025-11-27 03:28:34,478 | INFO     | current memory leak: 6.11 B/s (using 924 data points, chi2=0.08)
[2025-11-26 22:29:12] 2025-11-27 03:28:34,479 | INFO     | could have reported an average CPU frequency of 2626 MHz (35 samples)
[2025-11-26 22:29:12] 2025-11-27 03:28:34,479 | INFO     | ..............................
[2025-11-26 22:29:12] 2025-11-27 03:28:34,479 | INFO     | . Timing measurements:
[2025-11-26 22:29:12] 2025-11-27 03:28:34,480 | INFO     | . get job = 0 s
[2025-11-26 22:29:12] 2025-11-27 03:28:34,480 | INFO     | . initial setup = 4 s
[2025-11-26 22:29:12] 2025-11-27 03:28:34,480 | INFO     | . payload setup = 27 s
[2025-11-26 22:29:12] 2025-11-27 03:28:34,480 | INFO     | . stage-in = 0 s
[2025-11-26 22:29:12] 2025-11-27 03:28:34,480 | INFO     | . payload execution = 57914 s
[2025-11-26 22:29:12] 2025-11-27 03:28:34,480 | INFO     | . stage-out = 7 s
[2025-11-26 22:29:12] 2025-11-27 03:28:34,480 | INFO     | . log creation = 1 s
[2025-11-26 22:29:12] 2025-11-27 03:28:34,480 | INFO     | ..............................
[2025-11-26 22:29:12] 2025-11-27 03:28:35,017 | INFO     | 
[2025-11-26 22:29:12] 2025-11-27 03:28:35,019 | INFO     | job summary report
[2025-11-26 22:29:12] 2025-11-27 03:28:35,019 | INFO     | --------------------------------------------------
[2025-11-26 22:29:12] 2025-11-27 03:28:35,019 | INFO     | PanDA job id: 6895325978
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | task id: 47556149
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | errors: (none)
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | pilot state: finished 
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | transexitcode: 0
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | exeerrorcode: 0
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | exeerrordiag: 
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | exitcode: 0
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | exitmsg: OK
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | cpuconsumptiontime: 255330 s
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | nevents: 1000
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | neventsw: 0
[2025-11-26 22:29:12] 2025-11-27 03:28:35,020 | INFO     | pid: 2632947
[2025-11-26 22:29:12] 2025-11-27 03:28:35,021 | INFO     | pgrp: 2632947
[2025-11-26 22:29:12] 2025-11-27 03:28:35,021 | INFO     | corecount: 8
[2025-11-26 22:29:12] 2025-11-27 03:28:35,021 | INFO     | event service: False
[2025-11-26 22:29:12] 2025-11-27 03:28:35,021 | INFO     | sizes: {0: 2283432, 1: 2284117, 2: 2284316, 3: 2284316, 13: 2284344, 20: 2284662, 24: 2284818, 57947: 2336036, 57956: 2345086, 57987: 2345276}
[2025-11-26 22:29:12] 2025-11-27 03:28:35,021 | INFO     | --------------------------------------------------
[2025-11-26 22:29:12] 2025-11-27 03:28:35,021 | INFO     | 
[2025-11-26 22:29:12] 2025-11-27 03:28:35,021 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 22:29:12] 2025-11-27 03:28:35,141 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,141 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,141 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,141 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,141 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,141 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,141 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,141 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,142 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:29:12] 2025-11-27 03:28:35,143 | INFO     | job 6895325978 has completed (purged errors)
[2025-11-26 22:29:12] 2025-11-27 03:28:35,143 | INFO     | overall cleanup function is called
[2025-11-26 22:29:12] 2025-11-27 03:28:36,172 | INFO     | --- collectZombieJob: --- 10, [2632947]
[2025-11-26 22:29:12] 2025-11-27 03:28:36,175 | INFO     | zombie collector waiting for pid 2632947
[2025-11-26 22:29:12] 2025-11-27 03:28:36,193 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:29:12] 2025-11-27 03:28:36,194 | INFO     | collected zombie processes
[2025-11-26 22:29:12] 2025-11-27 03:28:36,194 | INFO     | will attempt to kill all subprocesses of pid=2632947
[2025-11-26 22:29:12] 2025-11-27 03:28:37,475 | INFO     | process IDs to be killed: [2632947] (in reverse order)
[2025-11-26 22:29:12] 2025-11-27 03:28:37,992 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:29:12] 2025-11-27 03:28:37,992 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:29:12] 2025-11-27 03:28:38,037 | INFO     | did not find any defunct processes belonging to 2632947
[2025-11-26 22:29:12] 2025-11-27 03:28:38,161 | INFO     | did not find any defunct processes belonging to 2632947
[2025-11-26 22:29:12] 2025-11-27 03:28:38,210 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:29:12] 2025-11-27 03:28:38,210 | INFO     | ready for new job
[2025-11-26 22:29:12] 2025-11-27 03:28:38,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:29:12] 2025-11-27 03:28:38,229 | INFO     | ***************************************
[2025-11-26 22:29:12] 2025-11-27 03:28:38,229 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:29:12] 2025-11-27 03:28:38,229 | INFO     | ***************************************
[2025-11-26 22:29:12] 2025-11-27 03:28:38,229 | INFO     | 
[2025-11-26 22:29:12] 2025-11-27 03:28:38,258 | INFO     | architecture information:
[2025-11-26 22:29:12] 2025-11-27 03:28:38,295 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:29:12] 2025-11-27 03:28:38,357 | INFO     | cat /etc/os-release:
[2025-11-26 22:29:12] NAME="CentOS Linux"
[2025-11-26 22:29:12] VERSION="7 (Core)"
[2025-11-26 22:29:12] ID="centos"
[2025-11-26 22:29:12] ID_LIKE="rhel fedora"
[2025-11-26 22:29:12] VERSION_ID="7"
[2025-11-26 22:29:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:29:12] ANSI_COLOR="0;31"
[2025-11-26 22:29:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:29:12] HOME_URL="https://www.centos.org/"
[2025-11-26 22:29:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:29:12] 
[2025-11-26 22:29:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:29:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:29:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:29:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:29:12] 
[2025-11-26 22:29:12] 2025-11-27 03:28:38,358 | INFO     | ***************************************
[2025-11-26 22:29:12] 2025-11-27 03:28:38,863 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 22:29:12] 2025-11-27 03:28:38,944 | INFO     | sufficient remaining disk space (87138762752 B)
[2025-11-26 22:29:12] 2025-11-27 03:28:38,944 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:29:12] 2025-11-27 03:28:38,944 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:29:12] 2025-11-27 03:28:38,944 | INFO     | update_server=False
[2025-11-26 22:29:12] 2025-11-27 03:28:38,944 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:29:12] 2025-11-27 03:28:38,955 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:29:12] 2025-11-27 03:28:38,956 | INFO     | aborting loop
[2025-11-26 22:29:12] 2025-11-27 03:28:39,229 | INFO     | all payload control threads have been joined
[2025-11-26 22:29:12] 2025-11-27 03:28:39,583 | INFO     | all job control threads have been joined
[2025-11-26 22:29:12] 2025-11-27 03:28:39,786 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:29:12] 2025-11-27 03:28:39,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:29:12] 2025-11-27 03:28:39,870 | INFO     | all data control threads have been joined
[2025-11-26 22:29:12] 2025-11-27 03:28:39,950 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:39,975 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:40,114 | INFO     | [job] validate thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:40,170 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:40,179 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:40,235 | INFO     | [payload] control thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:40,337 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:40,340 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:40,613 | INFO     | [job] control thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:40,873 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:40,879 | INFO     | [data] control thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:41,191 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:41,287 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:41,312 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:41,796 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:28:42,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:29:12] 2025-11-27 03:28:46,109 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:29:12] 2025-11-27 03:29:04,609 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:29:12] 2025-11-27 03:29:05,782 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140507324409664)>', '<ExcThread(monitor, started 140506684184320)>']
[2025-11-26 22:29:12] 2025-11-27 03:29:08,130 | INFO     | PID=2623970 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:29:12] 2025-11-27 03:29:08,130 | INFO     | .. there are 54 such processes running
[2025-11-26 22:29:12] 2025-11-27 03:29:08,130 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:29:12] 2025-11-27 03:29:08,130 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:29:12] 2025-11-27 03:29:08,131 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:29:12] 2025-11-27 03:29:08,131 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:29:12] 2025-11-27 03:29:08,131 | INFO     | [monitor] control thread has ended
[2025-11-26 22:29:12] 2025-11-27 03:29:10,808 | INFO     | all workflow threads have been joined
[2025-11-26 22:29:12] 2025-11-27 03:29:10,808 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:29:12] 2025-11-27 03:29:10,809 | INFO     | traces error code: 0
[2025-11-26 22:29:12] 2025-11-27 03:29:10,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:29:12] 2025-11-27 03:29:11,024 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:29:12] 2025-11-27 03:29:11,048 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:29:12] 2025-11-27 03:29:11,067 [wrapper] pilotpid: 2623970
[2025-11-26 22:29:12] 2025-11-27 03:29:11,075 [wrapper] Pilot exit status: 0
[2025-11-26 22:29:12] 2025-11-27 03:29:11,237 [wrapper] pandaids: 6895325978
[2025-11-26 22:29:12] 2025-11-27 03:29:11,400 [wrapper] cleanup supervisor_pilot 2815786 2623971
[2025-11-26 22:29:12] 2025-11-27 03:29:11,405 [wrapper] Test setup, not cleaning
[2025-11-26 22:29:12] 2025-11-27 03:29:11,413 [wrapper] apfmon messages muted
[2025-11-26 22:29:12] 2025-11-27 03:29:11,425 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:29:12] 2025-11-27 03:29:11,440 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:29:12]  *** Error codes and diagnostics ***
[2025-11-26 22:29:12]     "exeErrorCode": 0,
[2025-11-26 22:29:12]     "exeErrorDiag": "",
[2025-11-26 22:29:12]     "pilotErrorCode": 0,
[2025-11-26 22:29:12]     "pilotErrorDiag": "",
[2025-11-26 22:29:12]  *** Listing of results directory ***
[2025-11-26 22:29:12] total 1314532
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 10:11 pilot3.tar.gz
[2025-11-26 22:29:12] -rwx------. 1 boincer umatlas     36292 Nov 21 10:14 runpilot2-wrapper.sh
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 10:14 queuedata.json
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas       100 Nov 26 06:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:29:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 06:20 run_atlas
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas       105 Nov 26 06:20 job.xml
[2025-11-26 22:29:12] -rw-r--r--. 2 boincer umatlas 409260195 Nov 26 06:20 EVNT.47483658._001021.pool.root.1
[2025-11-26 22:29:12] -rw-r--r--. 2 boincer umatlas    590091 Nov 26 06:20 input.tar.gz
[2025-11-26 22:29:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 06:20 start_atlas.sh
[2025-11-26 22:29:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 06:20 shared
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas         0 Nov 26 06:20 boinc_lockfile
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 06:20 pandaJob.out
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas        57 Nov 26 06:20 setup.sh.local
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas    991830 Nov 26 06:21 agis_schedconf.cvmfs.json
[2025-11-26 22:29:12] drwx------. 5 boincer umatlas      4096 Nov 26 06:21 pilot3
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas       533 Nov 26 22:11 boinc_task_state.xml
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas 914417582 Nov 26 22:26 HITS.47556149._000074.pool.root.1
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas      1058 Nov 26 22:27 memory_monitor_summary.json
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:28 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas   2079998 Nov 26 22:28 log.47556149._000074.job.log.tgz.1
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas      6882 Nov 26 22:28 init_data.xml
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas        95 Nov 26 22:28 pilot_heartbeat.json
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas      8622 Nov 26 22:28 heartbeat.json
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas      4824 Nov 26 22:29 pilotlog.txt
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas   7159984 Nov 26 22:29 log.47556149._000074.job.log.1
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas       353 Nov 26 22:29 output.list
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:29 boinc_mmap_file
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:29 runtime_log
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas   9256960 Nov 26 22:29 result.tar.gz
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 22:29 runtime_log.err
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas       662 Nov 26 22:29 beoKDm20hg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhVJKDmIt3kyn.diag
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas        29 Nov 26 22:29 wrapper_checkpoint.txt
[2025-11-26 22:29:12] -rw-r--r--. 1 boincer umatlas     21367 Nov 26 22:29 stderr.txt
[2025-11-26 22:29:12] HITS file was successfully produced:
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas 914417582 Nov 26 22:26 shared/HITS.pool.root.1
[2025-11-26 22:29:12]  *** Contents of shared directory: ***
[2025-11-26 22:29:12] total 1302304
[2025-11-26 22:29:12] -rw-r--r--. 2 boincer umatlas 409260195 Nov 26 06:20 ATLAS.root_0
[2025-11-26 22:29:12] -rw-r--r--. 2 boincer umatlas    590091 Nov 26 06:20 input.tar.gz
[2025-11-26 22:29:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 06:20 start_atlas.sh
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas 914417582 Nov 26 22:26 HITS.pool.root.1
[2025-11-26 22:29:12] -rw-------. 1 boincer umatlas   9256960 Nov 26 22:29 result.tar.gz
22:29:14 (2619730): run_atlas exited; CPU time 257889.607396
22:29:14 (2619730): called boinc_finish(0)

</stderr_txt>
]]>

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