Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 14:25:13 (12048): vboxwrapper version 26210
2025-11-26 14:25:13 (12048): BOINC client version: 8.0.2
2025-11-26 14:25:14 (12048): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-26 14:25:14 (12048): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 14:25:14 (12048): Create VM. (boinc_2e26b322dc5a9b18, slot#2)
2025-11-26 14:25:15 (12048): Setting Memory Size for VM. (4700MB)
2025-11-26 14:25:15 (12048): Setting CPU Count for VM. (7)
2025-11-26 14:25:15 (12048): Setting Chipset Options for VM.
2025-11-26 14:25:15 (12048): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 14:25:16 (12048): Setting Boot Options for VM.
2025-11-26 14:25:16 (12048): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 14:25:16 (12048): Enabling VM Network Access.
2025-11-26 14:25:17 (12048): Disabling USB Support for VM.
2025-11-26 14:25:17 (12048): Disabling COM Port Support for VM.
2025-11-26 14:25:17 (12048): Disabling LPT Port Support for VM.
2025-11-26 14:25:17 (12048): Disabling Audio Support for VM.
2025-11-26 14:25:18 (12048): Disabling Clipboard Support for VM.
2025-11-26 14:25:18 (12048): Disabling Drag and Drop Support for VM.
2025-11-26 14:25:18 (12048): Adding storage controller(s) to VM.
2025-11-26 14:25:18 (12048): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 14:25:19 (12048): Adding VirtualBox Guest Additions to VM.
2025-11-26 14:25:19 (12048): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 14:25:19 (12048): forwarding host port 62088 to guest port 80
2025-11-26 14:25:20 (12048): Enabling remote desktop for VM.
2025-11-26 14:25:20 (12048): Required extension pack not installed, remote desktop not enabled.
2025-11-26 14:25:20 (12048): Enabling shared directory for VM.
2025-11-26 14:25:20 (12048): Starting VM using VBoxManage interface. (boinc_2e26b322dc5a9b18, slot#2)
2025-11-26 14:25:24 (12048): Successfully started VM. (PID = '5880')
2025-11-26 14:25:24 (12048): Reporting VM Process ID to BOINC.
2025-11-26 14:25:24 (12048): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-26 14:25:24 (12048): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 14:25:24 (12048): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 14:25:24 (12048): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 14:25:24 (12048): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 14:25:24 (12048): Detected: Web Application Enabled (http://localhost:62088)
2025-11-26 14:25:24 (12048): Preference change detected
2025-11-26 14:25:24 (12048): Setting CPU throttle for VM. (100%)
2025-11-26 14:25:24 (12048): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 14:25:26 (12048): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 14:25:26 (12048): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 14:25:29 (12048): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 14:25:29 (12048): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 14:25:29 (12048): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 14:25:34 (12048): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 14:25:34 (12048): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-26 14:25:38 (12048): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 14:25:38 (12048): Guest Log: 00:00:00.000084 main     Log opened 2025-11-26T14:25:37.951688000Z
2025-11-26 14:25:38 (12048): Guest Log: 00:00:00.000143 main     OS Product: Linux
2025-11-26 14:25:38 (12048): Guest Log: 00:00:00.000158 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 14:25:38 (12048): Guest Log: 00:00:00.000169 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 14:25:38 (12048): Guest Log: 00:00:00.000181 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 14:25:38 (12048): Guest Log: 00:00:00.000181 main     Process ID: 1355
2025-11-26 14:25:38 (12048): Guest Log: 00:00:00.000181 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 14:25:38 (12048): Guest Log: 00:00:00.000646 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 14:25:38 (12048): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 14:25:38 (12048): Guest Log: [INFO] Mounting shared directory
2025-11-26 14:25:38 (12048): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 14:25:43 (12048): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 14:25:43 (12048): Guest Log: [INFO] Detected branch: prod
2025-11-26 14:25:43 (12048): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 14:25:43 (12048): Guest Log: Copying input files
2025-11-26 14:25:45 (12048): Guest Log: Copied input files into RunAtlas.
2025-11-26 14:25:45 (12048): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 14:25:45 (12048): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 14:25:45 (12048): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 14:25:45 (12048): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 14:25:47 (12048): Guest Log: 00:00:10.049495 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 589 523 395 000ns (GuestNow=1 764 163 548 429 817 000 ns GuestLast=1 764 167 137 953 212 000 ns fSetTimeLastLoop=true )
2025-11-26 14:26:44 (12048): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 14:26:44 (12048): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 14:26:44 (12048): Guest Log: 2.6.3.0 1632 1 30144 153323 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 14:26:45 (12048): Guest Log: copied the webapp to /var/www
2025-11-26 14:26:45 (12048): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-26 14:26:45 (12048): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-26 14:26:45 (12048): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 14:26:45 (12048): Guest Log:  *** Starting ATLAS job. (PandaID=6894292811 taskID=47533967) ***
2025-11-26 16:05:26 (12048): Status Report: Elapsed Time: '6000.000000'
2025-11-26 16:05:26 (12048): Status Report: CPU Time: '39502.812500'
2025-11-26 17:45:29 (12048): Status Report: Elapsed Time: '12000.000000'
2025-11-26 17:45:29 (12048): Status Report: CPU Time: '81404.734375'
2025-11-26 19:25:31 (12048): Status Report: Elapsed Time: '18000.000000'
2025-11-26 19:25:31 (12048): Status Report: CPU Time: '123308.718750'
2025-11-26 21:05:33 (12048): Status Report: Elapsed Time: '24000.000000'
2025-11-26 21:05:33 (12048): Status Report: CPU Time: '165213.250000'
2025-11-26 22:45:36 (12048): Status Report: Elapsed Time: '30000.000000'
2025-11-26 22:45:36 (12048): Status Report: CPU Time: '206858.562500'
2025-11-26 23:02:42 (12048): Guest Log:  *** Job finished ***
2025-11-26 23:02:42 (12048): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:45,383 | INFO     | [payload] failed_post thread has finished
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:47,655 | INFO     | [data] queue_monitor thread has finished
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:52,388 | INFO     | [monitor] cgroup control has ended
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:52,572 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139696244303680)>', '<ExcThread(monitor, started 139695119906560)>']
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:53,054 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:53,054 | INFO     | [monitor] control thread has ended
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,608 | INFO     | all workflow threads have been joined
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,608 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,608 | INFO     | traces error code: 0
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,608 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,722 [wrapper] ==== pilot stdout END ====
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,726 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,730 [wrapper] pilotpid: 6073
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,735 [wrapper] Pilot exit status: 0
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,750 [wrapper] pandaids: 6894292811
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,778 [wrapper] cleanup supervisor_pilot 11039 6074
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,782 [wrapper] Test setup, not cleaning
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,786 [wrapper] apfmon messages muted
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,790 [wrapper] ==== wrapper stdout END ====
2025-11-26 23:02:42 (12048): Guest Log: 2025-11-26 22:12:57,794 [wrapper] ==== wrapper stderr END ====
2025-11-26 23:02:42 (12048): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 23:02:42 (12048): Guest Log:     "exeErrorCode": 65,
2025-11-26 23:02:42 (12048): Guest Log:     "exeErrorDiag": "Non-zero return code from HITSMergeAthenaMP0 (1); Logfile error in log.HITSMergeAthenaMP0: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
2025-11-26 23:02:42 (12048): Guest Log:     "pilotErrorCode": 1305,
2025-11-26 23:02:42 (12048): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from HITSMergeAthenaMP0 (1); Logfile error in log.HITSMergeAthenaMP0: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; C",
2025-11-26 23:02:42 (12048): Guest Log:  *** Listing of results directory ***
2025-11-26 23:02:42 (12048): Guest Log: total 15212
2025-11-26 23:02:42 (12048): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Nov 21 12:49 queuedata.json
2025-11-26 23:02:42 (12048): Guest Log: -rwx------. 1 atlas atlas   36292 Nov 21 12:50 runpilot2-wrapper.sh
2025-11-26 23:02:42 (12048): Guest Log: -rw-r--r--. 1 atlas atlas  576529 Nov 21 12:50 pilot3.tar.gz
2025-11-26 23:02:42 (12048): Guest Log: -rwxr-xr-x. 1 atlas atlas   15847 Nov 26 13:25 start_atlas.sh
2025-11-26 23:02:42 (12048): Guest Log: -rwxr-xr-x. 1 atlas atlas  590098 Nov 26 13:25 input.tar.gz
2025-11-26 23:02:42 (12048): Guest Log: -rwxr-xr-x. 1 atlas atlas    9128 Nov 26 13:25 init_data.xml
2025-11-26 23:02:42 (12048): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Nov 26 13:25 EVNT.47493127._002459.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 23:02:42 (12048): Guest Log: -rw-r--r--. 1 atlas atlas    2785 Nov 26 13:26 pandaJob.out
2025-11-26 23:02:42 (12048): Guest Log: -rw-------. 1 atlas atlas  991830 Nov 26 13:27 agis_schedconf.cvmfs.json
2025-11-26 23:02:42 (12048): Guest Log: drwx------. 5 atlas atlas    4096 Nov 26 13:27 pilot3
2025-11-26 23:02:42 (12048): Guest Log: -rw-------. 1 atlas atlas    1036 Nov 26 22:09 memory_monitor_summary.json
2025-11-26 23:02:42 (12048): Guest Log: -rw-------. 1 atlas atlas 1604100 Nov 26 22:09 log.47533967._004309.job.log.tgz.1
2025-11-26 23:02:42 (12048): Guest Log: -rw-------. 1 atlas atlas 1516240 Nov 26 22:09 agis_ddmendpoints.agis.ALL.json
2025-11-26 23:02:42 (12048): Guest Log: -rw-------. 1 atlas atlas      95 Nov 26 22:12 pilot_heartbeat.json
2025-11-26 23:02:42 (12048): Guest Log: -rw-------. 1 atlas atlas   10221 Nov 26 22:12 heartbeat.json
2025-11-26 23:02:42 (12048): Guest Log: -rw-------. 1 atlas atlas    4612 Nov 26 22:12 pilotlog.txt
2025-11-26 23:02:42 (12048): Guest Log: -rw-------. 1 atlas atlas 4258957 Nov 26 22:12 log.47533967._004309.job.log.1
2025-11-26 23:02:42 (12048): Guest Log: -rw-------. 1 atlas atlas     186 Nov 26 22:12 output.list
2025-11-26 23:02:42 (12048): Guest Log: -rw-r--r--. 1 atlas atlas     620 Nov 26 22:12 runtime_log
2025-11-26 23:02:42 (12048): Guest Log: -rw-------. 1 atlas atlas 5888000 Nov 26 22:12 result.tar.gz
2025-11-26 23:02:42 (12048): Guest Log: -rw-r--r--. 1 atlas atlas    8592 Nov 26 22:12 runtime_log.err
2025-11-26 23:02:42 (12048): Guest Log: -rw-------. 1 atlas atlas     659 Nov 26 22:12 rN2LDmdlfg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMRJKDmMR0Bmm.diag
2025-11-26 23:02:42 (12048): Guest Log: Looking for outputfile HITS.47533967._004309.pool.root.1
2025-11-26 23:02:42 (12048): Guest Log: No HITS file was produced
2025-11-26 23:02:42 (12048): Guest Log: Successfully finished the ATLAS job!
2025-11-26 23:02:42 (12048): Guest Log: Copying the results back to the shared directory!
2025-11-26 23:02:42 (12048): Guest Log:  *** Contents of shared directory: ***
2025-11-26 23:02:42 (12048): Guest Log: total 405780
2025-11-26 23:02:42 (12048): Guest Log: -rwxrwxrwx. 1 root root 409005911 Nov 26 13:25 ATLAS.root_0
2025-11-26 23:02:42 (12048): Guest Log: -rwxrwxrwx. 1 root root      9128 Nov 26 13:25 init_data.xml
2025-11-26 23:02:42 (12048): Guest Log: -rwxrwxrwx. 1 root root    590098 Nov 26 11:12 input.tar.gz
2025-11-26 23:02:42 (12048): Guest Log: -rwxrwxrwx. 1 root root   5888000 Nov 26 22:02 result.tar.gz
2025-11-26 23:02:42 (12048): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 11:12 start_atlas.sh
2025-11-26 23:02:42 (12048): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 23:02:43 (12048): VM Completion File Detected.
2025-11-26 23:02:43 (12048): Powering off VM.
2025-11-26 23:02:44 (12048): Successfully stopped VM.
2025-11-26 23:02:44 (12048): Deregistering VM. (boinc_2e26b322dc5a9b18, slot#2)
2025-11-26 23:02:44 (12048): Removing network bandwidth throttle group from VM.
2025-11-26 23:02:44 (12048): Removing VM from VirtualBox.
2025-11-26 23:02:50 (12048): called boinc_finish(0)

</stderr_txt>
]]>

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