Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:03:56 (1901390): wrapper (7.7.26015): starting
01:03:56 (1901390): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 01:03:56] Arguments: --nthreads 12
[2025-11-27 01:03:56] Threads: 12
[2025-11-27 01:03:56] Checking for CVMFS
[2025-11-27 01:03:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:03:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:03:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:03:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:03:56] 2.9.2.0 369954 9445 71752 153340 0 81 3978639 36864001 0 130560 1 4729474 99.984 321743 492 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 01:03:56] CVMFS is ok
[2025-11-27 01:03:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:03:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:03:56] Further information can be found at the LHC@home message board.
[2025-11-27 01:03:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:03:56] Checking for apptainer binary...
[2025-11-27 01:03:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:03:56] Running /usr/bin/apptainer --version
[2025-11-27 01:03:56] apptainer version 1.4.2-2.1
[2025-11-27 01:03:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:03:56] cosA131a
[2025-11-27 01:03:56] apptainer works
[2025-11-27 01:03:56] Set ATHENA_PROC_NUMBER=12
[2025-11-27 01:03:56] Set ATHENA_CORE_NUMBER=12
[2025-11-27 01:03:56] Starting ATLAS job with PandaID=6896990066
[2025-11-27 01:03:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:41:41]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:41:41] 2025-11-27 04:41:07,177 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:41:41] 2025-11-27 04:41:07,177 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:41:41] 2025-11-27 04:41:07,179 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:41:41] 2025-11-27 04:41:07,179 | INFO     | sum of square deviations: 6239865890.466904
[2025-11-27 05:41:41] 2025-11-27 04:41:07,180 | INFO     | sum of deviations: 347065576517.15405
[2025-11-27 05:41:41] 2025-11-27 04:41:07,180 | INFO     | mean x: 1764210135.6139705
[2025-11-27 05:41:41] 2025-11-27 04:41:07,180 | INFO     | mean y: 3580325.8014705884
[2025-11-27 05:41:41] 2025-11-27 04:41:07,180 | INFO     | intersect: -98122984982.2317
[2025-11-27 05:41:41] 2025-11-27 04:41:07,180 | INFO     | chi2: 5.455539677232773
[2025-11-27 05:41:41] 2025-11-27 04:41:07,180 | INFO     | sum of square deviations: 5902045755.400726
[2025-11-27 05:41:41] 2025-11-27 04:41:07,181 | INFO     | sum of deviations: 405063677478.24396
[2025-11-27 05:41:41] 2025-11-27 04:41:07,181 | INFO     | mean x: 1764209983.1161048
[2025-11-27 05:41:41] 2025-11-27 04:41:07,181 | INFO     | mean y: 3606273.734082397
[2025-11-27 05:41:41] 2025-11-27 04:41:07,181 | INFO     | intersect: -121076001242.17212
[2025-11-27 05:41:41] 2025-11-27 04:41:07,181 | INFO     | chi2: 3.919896003012823
[2025-11-27 05:41:41] 2025-11-27 04:41:07,181 | INFO     | current chi2=3.919896003012823 (change=28.14833664630001 %)
[2025-11-27 05:41:41] 2025-11-27 04:41:07,181 | INFO     | sum of square deviations: 5576644457.8320465
[2025-11-27 05:41:41] 2025-11-27 04:41:07,182 | INFO     | sum of deviations: 391446950125.8547
[2025-11-27 05:41:41] 2025-11-27 04:41:07,182 | INFO     | mean x: 1764209830.6183207
[2025-11-27 05:41:41] 2025-11-27 04:41:07,182 | INFO     | mean y: 3599891.4885496185
[2025-11-27 05:41:41] 2025-11-27 04:41:07,182 | INFO     | intersect: -123833335168.57173
[2025-11-27 05:41:41] 2025-11-27 04:41:07,182 | INFO     | chi2: 3.9146064342775704
[2025-11-27 05:41:41] 2025-11-27 04:41:07,182 | INFO     | current chi2=3.9146064342775704 (change=0.13494155791855186 %)
[2025-11-27 05:41:41] 2025-11-27 04:41:07,182 | INFO     | right removable region: 261
[2025-11-27 05:41:41] 2025-11-27 04:41:07,183 | INFO     | sum of square deviations: 5902026845.400726
[2025-11-27 05:41:41] 2025-11-27 04:41:07,183 | INFO     | sum of deviations: 231686466666.34457
[2025-11-27 05:41:41] 2025-11-27 04:41:07,183 | INFO     | mean x: 1764210288.1161048
[2025-11-27 05:41:41] 2025-11-27 04:41:07,183 | INFO     | mean y: 3632349.4082397004
[2025-11-27 05:41:41] 2025-11-27 04:41:07,183 | INFO     | intersect: -69251160760.95448
[2025-11-27 05:41:41] 2025-11-27 04:41:07,184 | INFO     | chi2: 2.459291337612327
[2025-11-27 05:41:41] 2025-11-27 04:41:07,184 | INFO     | current chi2=2.459291337612327 (change=54.92120884253637 %)
[2025-11-27 05:41:41] 2025-11-27 04:41:07,184 | INFO     | sum of square deviations: 5576606637.8320465
[2025-11-27 05:41:41] 2025-11-27 04:41:07,184 | INFO     | sum of deviations: 174955052307.36658
[2025-11-27 05:41:41] 2025-11-27 04:41:07,184 | INFO     | mean x: 1764210440.6183207
[2025-11-27 05:41:41] 2025-11-27 04:41:07,185 | INFO     | mean y: 3658787.4236641224
[2025-11-27 05:41:41] 2025-11-27 04:41:07,185 | INFO     | intersect: -55344969861.69579
[2025-11-27 05:41:41] 2025-11-27 04:41:07,185 | INFO     | chi2: 1.6467255953599618
[2025-11-27 05:41:41] 2025-11-27 04:41:07,185 | INFO     | current chi2=1.6467255953599618 (change=33.040645889529614 %)
[2025-11-27 05:41:41] 2025-11-27 04:41:07,185 | INFO     | sum of square deviations: 5263420648.949405
[2025-11-27 05:41:41] 2025-11-27 04:41:07,186 | INFO     | sum of deviations: 154384119251.38892
[2025-11-27 05:41:41] 2025-11-27 04:41:07,186 | INFO     | mean x: 1764210593.1089494
[2025-11-27 05:41:41] 2025-11-27 04:41:07,186 | INFO     | mean y: 3668801.700389105
[2025-11-27 05:41:41] 2025-11-27 04:41:07,186 | INFO     | intersect: -51743306550.81314
[2025-11-27 05:41:41] 2025-11-27 04:41:07,186 | INFO     | chi2: 1.6229896913296518
[2025-11-27 05:41:41] 2025-11-27 04:41:07,186 | INFO     | current chi2=1.6229896913296518 (change=1.4414000788711563 %)
[2025-11-27 05:41:41] 2025-11-27 04:41:07,186 | INFO     | left removable region: 30
[2025-11-27 05:41:41] 2025-11-27 04:41:07,186 | INFO     | sum of square deviations: 3822091908.6060514
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | sum of deviations: 152634219676.78793
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | mean x: 1764210715.121212
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | mean y: 3720244.9004329005
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | intersect: -70449563529.26251
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | chi2: 0.02509235500652132
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | current memory leak: 39.93 B/s (using 231 data points, chi2=0.03)
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | could have reported an average CPU frequency of 3908 MHz (13 samples)
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | ..............................
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | . Timing measurements:
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | . get job = 0 s
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | . initial setup = 1 s
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | . payload setup = 3 s
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | . stage-in = 0 s
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | . payload execution = 16590 s
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | . stage-out = 1 s
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | . log creation = 0 s
[2025-11-27 05:41:41] 2025-11-27 04:41:07,187 | INFO     | ..............................
[2025-11-27 05:41:41] 2025-11-27 04:41:07,431 | INFO     | 
[2025-11-27 05:41:41] 2025-11-27 04:41:07,432 | INFO     | job summary report
[2025-11-27 05:41:41] 2025-11-27 04:41:07,432 | INFO     | --------------------------------------------------
[2025-11-27 05:41:41] 2025-11-27 04:41:07,432 | INFO     | PanDA job id: 6896990066
[2025-11-27 05:41:41] 2025-11-27 04:41:07,432 | INFO     | task id: 47556161
[2025-11-27 05:41:41] 2025-11-27 04:41:07,432 | INFO     | errors: (none)
[2025-11-27 05:41:41] 2025-11-27 04:41:07,432 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:41:41] 2025-11-27 04:41:07,433 | INFO     | pilot state: finished 
[2025-11-27 05:41:41] 2025-11-27 04:41:07,433 | INFO     | transexitcode: 0
[2025-11-27 05:41:41] 2025-11-27 04:41:07,433 | INFO     | exeerrorcode: 0
[2025-11-27 05:41:41] 2025-11-27 04:41:07,433 | INFO     | exeerrordiag: 
[2025-11-27 05:41:41] 2025-11-27 04:41:07,433 | INFO     | exitcode: 0
[2025-11-27 05:41:41] 2025-11-27 04:41:07,433 | INFO     | exitmsg: OK
[2025-11-27 05:41:41] 2025-11-27 04:41:07,433 | INFO     | cpuconsumptiontime: 190888 s
[2025-11-27 05:41:41] 2025-11-27 04:41:07,434 | INFO     | nevents: 1000
[2025-11-27 05:41:41] 2025-11-27 04:41:07,434 | INFO     | neventsw: 0
[2025-11-27 05:41:41] 2025-11-27 04:41:07,434 | INFO     | pid: 1911574
[2025-11-27 05:41:41] 2025-11-27 04:41:07,434 | INFO     | pgrp: 1911574
[2025-11-27 05:41:41] 2025-11-27 04:41:07,434 | INFO     | corecount: 12
[2025-11-27 05:41:41] 2025-11-27 04:41:07,434 | INFO     | event service: False
[2025-11-27 05:41:41] 2025-11-27 04:41:07,434 | INFO     | sizes: {0: 2284266, 6: 2284528, 10: 2284556, 16597: 2317433, 16598: 2326489, 16604: 2326679}
[2025-11-27 05:41:41] 2025-11-27 04:41:07,435 | INFO     | --------------------------------------------------
[2025-11-27 05:41:41] 2025-11-27 04:41:07,435 | INFO     | 
[2025-11-27 05:41:41] 2025-11-27 04:41:07,435 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-27 05:41:41] 2025-11-27 04:41:07,442 | INFO     | time since job start (16618s) is within the limit (172800.0s)
[2025-11-27 05:41:41] 2025-11-27 04:41:07,481 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,481 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,482 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,482 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,482 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,482 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,482 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,482 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,483 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,483 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,483 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,483 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,483 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,483 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,484 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,484 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,484 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:41:41] 2025-11-27 04:41:07,484 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,484 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:41:41] 2025-11-27 04:41:07,485 | INFO     | job 6896990066 has completed (purged errors)
[2025-11-27 05:41:41] 2025-11-27 04:41:07,485 | INFO     | overall cleanup function is called
[2025-11-27 05:41:41] 2025-11-27 04:41:08,507 | INFO     | --- collectZombieJob: --- 10, [1911574]
[2025-11-27 05:41:41] 2025-11-27 04:41:08,507 | INFO     | zombie collector waiting for pid 1911574
[2025-11-27 05:41:41] 2025-11-27 04:41:08,508 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:41:41] 2025-11-27 04:41:08,508 | INFO     | collected zombie processes
[2025-11-27 05:41:41] 2025-11-27 04:41:08,508 | INFO     | will attempt to kill all subprocesses of pid=1911574
[2025-11-27 05:41:41] 2025-11-27 04:41:08,553 | INFO     | process IDs to be killed: [1911574] (in reverse order)
[2025-11-27 05:41:41] 2025-11-27 04:41:08,578 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:41:41] 2025-11-27 04:41:08,578 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:41:41] 2025-11-27 04:41:08,580 | INFO     | did not find any defunct processes belonging to 1911574
[2025-11-27 05:41:41] 2025-11-27 04:41:08,581 | INFO     | did not find any defunct processes belonging to 1911574
[2025-11-27 05:41:41] 2025-11-27 04:41:08,581 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:41:41] 2025-11-27 04:41:08,581 | INFO     | ready for new job
[2025-11-27 05:41:41] 2025-11-27 04:41:08,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:41:41] 2025-11-27 04:41:08,582 | INFO     | ***************************************
[2025-11-27 05:41:41] 2025-11-27 04:41:08,582 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:41:41] 2025-11-27 04:41:08,582 | INFO     | ***************************************
[2025-11-27 05:41:41] 2025-11-27 04:41:08,582 | INFO     | 
[2025-11-27 05:41:41] 2025-11-27 04:41:08,583 | INFO     | architecture information:
[2025-11-27 05:41:41] 2025-11-27 04:41:08,583 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:41:41] 2025-11-27 04:41:08,593 | INFO     | cat /etc/os-release:
[2025-11-27 05:41:41] NAME="CentOS Linux"
[2025-11-27 05:41:41] VERSION="7 (Core)"
[2025-11-27 05:41:41] ID="centos"
[2025-11-27 05:41:41] ID_LIKE="rhel fedora"
[2025-11-27 05:41:41] VERSION_ID="7"
[2025-11-27 05:41:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:41:41] ANSI_COLOR="0;31"
[2025-11-27 05:41:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:41:41] HOME_URL="https://www.centos.org/"
[2025-11-27 05:41:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:41:41] 
[2025-11-27 05:41:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:41:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:41:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:41:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:41:41] 
[2025-11-27 05:41:41] 2025-11-27 04:41:08,593 | INFO     | ***************************************
[2025-11-27 05:41:41] 2025-11-27 04:41:09,097 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 05:41:41] 2025-11-27 04:41:09,110 | INFO     | sufficient remaining disk space (857470926848 B)
[2025-11-27 05:41:41] 2025-11-27 04:41:09,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:41:41] 2025-11-27 04:41:09,111 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:41:41] 2025-11-27 04:41:09,111 | INFO     | update_server=False
[2025-11-27 05:41:41] 2025-11-27 04:41:09,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:41:41] 2025-11-27 04:41:09,111 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:41:41] 2025-11-27 04:41:09,111 | INFO     | aborting loop
[2025-11-27 05:41:41] 2025-11-27 04:41:09,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:41:41] 2025-11-27 04:41:09,111 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-27 05:41:41] 2025-11-27 04:41:09,111 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:41:41] 2025-11-27 04:41:09,111 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:41:41] 2025-11-27 04:41:09,111 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:41:41] 2025-11-27 04:41:09,204 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:41:41] 2025-11-27 04:41:09,759 | INFO     | all data control threads have been joined
[2025-11-27 05:41:41] 2025-11-27 04:41:10,117 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:10,118 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:10,118 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:10,610 | INFO     | all payload control threads have been joined
[2025-11-27 05:41:41] 2025-11-27 04:41:10,627 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:10,686 | INFO     | all job control threads have been joined
[2025-11-27 05:41:41] 2025-11-27 04:41:10,765 | INFO     | [data] control thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:10,981 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:11,019 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:11,149 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:11,210 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:11,387 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:11,485 | INFO     | [job] validate thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:11,492 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:11,496 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:11,616 | INFO     | [payload] control thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:11,692 | INFO     | [job] control thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:11,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:41:41] 2025-11-27 04:41:15,738 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:41:41] 2025-11-27 04:41:36,137 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:41:41] 2025-11-27 04:41:36,294 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139743909791552)>', '<ExcThread(monitor, started 139743027242752)>']
[2025-11-27 05:41:41] 2025-11-27 04:41:37,250 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:41:41] 2025-11-27 04:41:37,250 | INFO     | [monitor] control thread has ended
[2025-11-27 05:41:41] 2025-11-27 04:41:41,320 | INFO     | all workflow threads have been joined
[2025-11-27 05:41:41] 2025-11-27 04:41:41,320 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:41:41] 2025-11-27 04:41:41,321 | INFO     | traces error code: 0
[2025-11-27 05:41:41] 2025-11-27 04:41:41,321 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:41:41] 2025-11-27 04:41:41,369 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:41:41] 2025-11-27 04:41:41,372 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:41:41] 2025-11-27 04:41:41,375 [wrapper] pilotpid: 1905118
[2025-11-27 05:41:41] 2025-11-27 04:41:41,378 [wrapper] Pilot exit status: 0
[2025-11-27 05:41:41] 2025-11-27 04:41:41,385 [wrapper] pandaids: 6896990066
[2025-11-27 05:41:41] 2025-11-27 04:41:41,403 [wrapper] cleanup supervisor_pilot 1943311 1905119
[2025-11-27 05:41:41] 2025-11-27 04:41:41,405 [wrapper] Test setup, not cleaning
[2025-11-27 05:41:41] 2025-11-27 04:41:41,408 [wrapper] apfmon messages muted
[2025-11-27 05:41:41] 2025-11-27 04:41:41,411 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:41:41] 2025-11-27 04:41:41,413 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:41:41]  *** Error codes and diagnostics ***
[2025-11-27 05:41:41]     "exeErrorCode": 0,
[2025-11-27 05:41:41]     "exeErrorDiag": "",
[2025-11-27 05:41:41]     "pilotErrorCode": 0,
[2025-11-27 05:41:41]     "pilotErrorDiag": "",
[2025-11-27 05:41:41]  *** Listing of results directory ***
[2025-11-27 05:41:41] total 1301340
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc    576529 Nov 25 13:49 pilot3.tar.gz
[2025-11-27 05:41:41] -rwx------ 1 boinc boinc     36292 Nov 25 14:04 runpilot2-wrapper.sh
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc      5112 Nov 25 14:04 queuedata.json
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc       100 Nov 27 01:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:41:41] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 01:03 run_atlas
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc       105 Nov 27 01:03 job.xml
[2025-11-27 05:41:41] -rw-r--r-- 2 boinc boinc 411082925 Nov 27 01:03 EVNT.47483658._002167.pool.root.1
[2025-11-27 05:41:41] -rw-r--r-- 2 boinc boinc    590106 Nov 27 01:03 input.tar.gz
[2025-11-27 05:41:41] -rw-r--r-- 2 boinc boinc     15847 Nov 27 01:03 start_atlas.sh
[2025-11-27 05:41:41] drwxrwx--x 2 boinc boinc      4096 Nov 27 01:03 shared
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc         0 Nov 27 01:03 boinc_setup_complete
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc      6272 Nov 27 01:03 init_data.xml
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc         0 Nov 27 01:03 boinc_lockfile
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc      2784 Nov 27 01:03 pandaJob.out
[2025-11-27 05:41:41] -rw------- 1 boinc boinc    991538 Nov 27 01:04 agis_schedconf.cvmfs.json
[2025-11-27 05:41:41] drwx------ 5 boinc boinc      4096 Nov 27 01:04 pilot3
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc       533 Nov 27 05:36 boinc_task_state.xml
[2025-11-27 05:41:41] -rw------- 1 boinc boinc        95 Nov 27 05:40 pilot_heartbeat.json
[2025-11-27 05:41:41] -rw------- 1 boinc boinc 908816461 Nov 27 05:40 HITS.47556161._001506.pool.root.1
[2025-11-27 05:41:41] -rw------- 1 boinc boinc      1032 Nov 27 05:40 memory_monitor_summary.json
[2025-11-27 05:41:41] -rw------- 1 boinc boinc   1516240 Nov 27 05:41 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:41:41] -rw------- 1 boinc boinc   2025655 Nov 27 05:41 log.47556161._001506.job.log.tgz.1
[2025-11-27 05:41:41] -rw------- 1 boinc boinc      8582 Nov 27 05:41 heartbeat.json
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc      8192 Nov 27 05:41 boinc_mmap_file
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc        29 Nov 27 05:41 wrapper_checkpoint.txt
[2025-11-27 05:41:41] -rw------- 1 boinc boinc      4556 Nov 27 05:41 pilotlog.txt
[2025-11-27 05:41:41] -rw------- 1 boinc boinc   2351139 Nov 27 05:41 log.47556161._001506.job.log.1
[2025-11-27 05:41:41] -rw------- 1 boinc boinc       353 Nov 27 05:41 output.list
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc       620 Nov 27 05:41 runtime_log
[2025-11-27 05:41:41] -rw------- 1 boinc boinc   4392960 Nov 27 05:41 result.tar.gz
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc      8910 Nov 27 05:41 runtime_log.err
[2025-11-27 05:41:41] -rw------- 1 boinc boinc       670 Nov 27 05:41 CeqMDmut7h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFOMKDmTbvUln.diag
[2025-11-27 05:41:41] -rw-r--r-- 1 boinc boinc     21037 Nov 27 05:41 stderr.txt
[2025-11-27 05:41:41] HITS file was successfully produced:
[2025-11-27 05:41:41] -rw------- 1 boinc boinc 908816461 Nov 27 05:40 shared/HITS.pool.root.1
[2025-11-27 05:41:41]  *** Contents of shared directory: ***
[2025-11-27 05:41:41] total 1293864
[2025-11-27 05:41:41] -rw-r--r-- 2 boinc boinc 411082925 Nov 27 01:03 ATLAS.root_0
[2025-11-27 05:41:41] -rw-r--r-- 2 boinc boinc    590106 Nov 27 01:03 input.tar.gz
[2025-11-27 05:41:41] -rw-r--r-- 2 boinc boinc     15847 Nov 27 01:03 start_atlas.sh
[2025-11-27 05:41:41] -rw------- 1 boinc boinc 908816461 Nov 27 05:40 HITS.pool.root.1
[2025-11-27 05:41:41] -rw------- 1 boinc boinc   4392960 Nov 27 05:41 result.tar.gz
05:41:43 (1901390): run_atlas exited; CPU time 190856.311419
05:41:43 (1901390): called boinc_finish(0)

</stderr_txt>
]]>

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