Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 18:33:55 (36672): vboxwrapper version 26210
2025-11-27 18:33:55 (36672): BOINC client version: 8.0.2
2025-11-27 18:33:55 (36672): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-11-27 18:33:56 (36672): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 18:33:56 (36672): Create VM. (boinc_ca9413a1279294fa, slot#3)
2025-11-27 18:33:57 (36672): Setting Memory Size for VM. (4800MB)
2025-11-27 18:33:57 (36672): Setting CPU Count for VM. (8)
2025-11-27 18:33:58 (36672): Setting Chipset Options for VM.
2025-11-27 18:33:58 (36672): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 18:33:59 (36672): Setting Boot Options for VM.
2025-11-27 18:34:00 (36672): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 18:34:01 (36672): Enabling VM Network Access.
2025-11-27 18:34:01 (36672): Disabling USB Support for VM.
2025-11-27 18:34:02 (36672): Disabling COM Port Support for VM.
2025-11-27 18:34:02 (36672): Disabling LPT Port Support for VM.
2025-11-27 18:34:03 (36672): Disabling Audio Support for VM.
2025-11-27 18:34:04 (36672): Disabling Clipboard Support for VM.
2025-11-27 18:34:04 (36672): Disabling Drag and Drop Support for VM.
2025-11-27 18:34:04 (36672): Adding storage controller(s) to VM.
2025-11-27 18:34:04 (36672): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 18:34:08 (36672): Adding VirtualBox Guest Additions to VM.
2025-11-27 18:34:08 (36672): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 18:34:09 (36672): forwarding host port 60372 to guest port 80
2025-11-27 18:34:09 (36672): Enabling remote desktop for VM.
2025-11-27 18:34:09 (36672): Required extension pack not installed, remote desktop not enabled.
2025-11-27 18:34:09 (36672): Enabling shared directory for VM.
2025-11-27 18:34:10 (36672): Starting VM using VBoxManage interface. (boinc_ca9413a1279294fa, slot#3)
2025-11-27 18:34:14 (36672): Successfully started VM. (PID = '14936')
2025-11-27 18:34:14 (36672): Reporting VM Process ID to BOINC.
2025-11-27 18:34:14 (36672): Guest Log: BIOS: VirtualBox 7.1.10
2025-11-27 18:34:14 (36672): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 18:34:14 (36672): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 18:34:14 (36672): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 18:34:14 (36672): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 18:34:14 (36672): Detected: Web Application Enabled (http://localhost:60372)
2025-11-27 18:34:14 (36672): Preference change detected
2025-11-27 18:34:14 (36672): Setting CPU throttle for VM. (100%)
2025-11-27 18:34:14 (36672): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 18:34:16 (36672): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 18:34:16 (36672): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 18:34:19 (36672): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 18:34:19 (36672): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 18:34:19 (36672): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 18:34:33 (36672): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 18:34:33 (36672): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-27 18:35:15 (36672): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 18:35:15 (36672): Guest Log: 00:00:00.000098 main     Log opened 2025-11-27T18:35:14.571165000Z
2025-11-27 18:35:15 (36672): Guest Log: 00:00:00.000172 main     OS Product: Linux
2025-11-27 18:35:15 (36672): Guest Log: 00:00:00.000183 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 18:35:15 (36672): Guest Log: 00:00:00.000193 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 18:35:15 (36672): Guest Log: 00:00:00.000203 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 18:35:15 (36672): Guest Log: 00:00:00.000203 main     Process ID: 1397
2025-11-27 18:35:15 (36672): Guest Log: 00:00:00.000204 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 18:35:15 (36672): Guest Log: 00:00:00.000638 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 18:35:15 (36672): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 18:35:15 (36672): Guest Log: [INFO] Mounting shared directory
2025-11-27 18:35:15 (36672): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 18:35:23 (36672): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 18:35:23 (36672): Guest Log: [INFO] Detected branch: prod
2025-11-27 18:35:23 (36672): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 18:35:23 (36672): Guest Log: Copying input files
2025-11-27 18:35:25 (36672): Guest Log: 00:00:10.016594 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 598 229 867 000ns (GuestNow=1 764 264 916 342 373 000 ns GuestLast=1 764 268 514 572 240 000 ns fSetTimeLastLoop=true )
2025-11-27 18:35:25 (36672): Guest Log: Copied input files into RunAtlas.
2025-11-27 18:35:25 (36672): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 18:35:25 (36672): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 18:35:25 (36672): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 18:35:25 (36672): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 18:35:39 (36672): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 18:35:40 (36672): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 18:35:40 (36672): Guest Log: 2.6.3.0 1676 0 32208 153377 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 18:35:42 (36672): Guest Log: copied the webapp to /var/www
2025-11-27 18:35:42 (36672): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-27 18:35:42 (36672): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-27 18:35:43 (36672): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 18:35:43 (36672): Guest Log:  *** Starting ATLAS job. (PandaID=6891478778 taskID=47493049) ***
2025-11-27 20:14:22 (36672): Status Report: Elapsed Time: '6000.006804'
2025-11-27 20:14:22 (36672): Status Report: CPU Time: '32826.687500'
2025-11-27 21:54:27 (36672): Status Report: Elapsed Time: '12000.754576'
2025-11-27 21:54:27 (36672): Status Report: CPU Time: '79829.187500'
2025-11-27 22:33:23 (36672): Preference change detected
2025-11-27 22:33:23 (36672): Setting CPU throttle for VM. (100%)
2025-11-27 22:33:23 (36672): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 23:34:47 (36672): Status Report: Elapsed Time: '18000.754576'
2025-11-27 23:34:47 (36672): Status Report: CPU Time: '126400.796875'
2025-11-28 00:39:28 (36672): VM state change detected. (old = 'running', new = 'paused')
2025-11-28 00:48:10 (36672): VM state change detected. (old = 'paused', new = 'running')
2025-11-28 01:23:28 (36672): Status Report: Elapsed Time: '24001.019241'
2025-11-28 01:23:28 (36672): Status Report: CPU Time: '173060.921875'
2025-11-28 01:44:53 (36672): Guest Log:  *** Job finished ***
2025-11-28 01:44:53 (36672): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:32,368 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:32,368 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:44,951 | INFO     | [monitor] cgroup control has ended
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:46,691 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139811764557632)>', '<ExcThread(monitor, started 139810958198528)>']
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:47,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:47,665 | INFO     | [monitor] control thread has ended
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:51,701 | INFO     | all workflow threads have been joined
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:51,702 | INFO     | end of generic workflow (traces error code: 0)
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:51,702 | INFO     | traces error code: 0
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:51,702 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:52,065 [wrapper] ==== pilot stdout END ====
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:52,068 [wrapper] ==== wrapper stdout RESUME ====
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:52,072 [wrapper] pilotpid: 6147
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:52,075 [wrapper] Pilot exit status: 0
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:52,107 [wrapper] pandaids: 6891478778
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:52,131 [wrapper] cleanup supervisor_pilot  1219 6148
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:52,134 [wrapper] Test setup, not cleaning
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:52,137 [wrapper] apfmon messages muted
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:52,139 [wrapper] ==== wrapper stdout END ====
2025-11-28 01:44:54 (36672): Guest Log: 2025-11-28 00:45:52,142 [wrapper] ==== wrapper stderr END ====
2025-11-28 01:44:54 (36672): Guest Log:  *** Error codes and diagnostics ***
2025-11-28 01:44:54 (36672): Guest Log:     "exeErrorCode": 0,
2025-11-28 01:44:54 (36672): Guest Log:     "exeErrorDiag": "",
2025-11-28 01:44:54 (36672): Guest Log:     "pilotErrorCode": 0,
2025-11-28 01:44:54 (36672): Guest Log:     "pilotErrorDiag": "",
2025-11-28 01:44:54 (36672): Guest Log:  *** Listing of results directory ***
2025-11-28 01:44:54 (36672): Guest Log: total 902652
2025-11-28 01:44:54 (36672): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 12:21 pilot3.tar.gz
2025-11-28 01:44:54 (36672): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 12:54 runpilot2-wrapper.sh
2025-11-28 01:44:54 (36672): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 12:54 queuedata.json
2025-11-28 01:44:54 (36672): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 27 17:35 start_atlas.sh
2025-11-28 01:44:54 (36672): Guest Log: -rwxr-xr-x. 1 atlas atlas    590094 Nov 27 17:35 input.tar.gz
2025-11-28 01:44:54 (36672): Guest Log: -rwxr-xr-x. 1 atlas atlas      9131 Nov 27 17:35 init_data.xml
2025-11-28 01:44:54 (36672): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 17:35 EVNT.47493047._000010.pool.root.1 -> /data/./ATLAS.root_0
2025-11-28 01:44:54 (36672): Guest Log: -rw-r--r--. 1 atlas atlas      2769 Nov 27 17:35 pandaJob.out
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas    991231 Nov 27 17:39 agis_schedconf.cvmfs.json
2025-11-28 01:44:54 (36672): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 17:40 pilot3
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas 910210467 Nov 28 00:44 HITS.47493049._000036.pool.root.1
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas      1050 Nov 28 00:44 memory_monitor_summary.json
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 28 00:44 agis_ddmendpoints.agis.ALL.json
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas   1711760 Nov 28 00:44 log.47493049._000036.job.log.tgz.1
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas      8603 Nov 28 00:45 heartbeat.json
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas        95 Nov 28 00:45 pilot_heartbeat.json
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 28 00:45 pilotlog.txt
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas   3417474 Nov 28 00:45 log.47493049._000036.job.log.1
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas       353 Nov 28 00:45 output.list
2025-11-28 01:44:54 (36672): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 28 00:45 runtime_log
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas   5150720 Nov 28 00:45 result.tar.gz
2025-11-28 01:44:54 (36672): Guest Log: -rw-r--r--. 1 atlas atlas      8615 Nov 28 00:45 runtime_log.err
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas       655 Nov 28 00:45 ethLDmPPaf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3BFKDm0ZeKhn.diag
2025-11-28 01:44:54 (36672): Guest Log: Looking for outputfile HITS.47493049._000036.pool.root.1
2025-11-28 01:44:54 (36672): Guest Log: HITS file was successfully produced
2025-11-28 01:44:54 (36672): Guest Log: -rw-------. 1 atlas atlas 910210467 Nov 28 00:44 /home/atlas/RunAtlas/HITS.47493049._000036.pool.root.1
2025-11-28 01:44:59 (36672): Guest Log: Successfully finished the ATLAS job!
2025-11-28 01:44:59 (36672): Guest Log: Copying the results back to the shared directory!
2025-11-28 01:44:59 (36672): Guest Log:  *** Contents of shared directory: ***
2025-11-28 01:44:59 (36672): Guest Log: total 1295328
2025-11-28 01:44:59 (36672): Guest Log: -rwxrwxrwx. 1 root root 410424533 Nov 27 17:33 ATLAS.root_0
2025-11-28 01:44:59 (36672): Guest Log: -rwxrwxrwx. 1 root root 910210467 Nov 28 00:44 HITS.pool.root.1
2025-11-28 01:44:59 (36672): Guest Log: -rwxrwxrwx. 1 root root      9131 Nov 27 17:33 init_data.xml
2025-11-28 01:44:59 (36672): Guest Log: -rwxrwxrwx. 1 root root    590094 Nov 26 11:28 input.tar.gz
2025-11-28 01:44:59 (36672): Guest Log: -rwxrwxrwx. 1 root root   5150720 Nov 28 00:44 result.tar.gz
2025-11-28 01:44:59 (36672): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 26 11:28 start_atlas.sh
2025-11-28 01:44:59 (36672): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-28 01:44:59 (36672): VM Completion File Detected.
2025-11-28 01:44:59 (36672): Powering off VM.
2025-11-28 01:45:01 (36672): Successfully stopped VM.
2025-11-28 01:45:01 (36672): Deregistering VM. (boinc_ca9413a1279294fa, slot#3)
2025-11-28 01:45:01 (36672): Removing network bandwidth throttle group from VM.
2025-11-28 01:45:02 (36672): Removing VM from VirtualBox.
2025-11-28 01:45:08 (36672): called boinc_finish(0)

</stderr_txt>
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