Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:10:50 (2478765): wrapper (7.7.26015): starting
06:10:50 (2478765): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 06:10:50] Arguments: --nthreads 8
[2025-11-26 06:10:50] Threads: 8
[2025-11-26 06:10:50] Checking for CVMFS
[2025-11-26 06:10:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:10:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:10:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:10:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:10:52] 2.13.3.0 12601 29973 361060 153319 1 66 20025680 32935936 34080 16776704 0 142889148 99.493 179207768 33895 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 06:10:52] CVMFS is ok
[2025-11-26 06:10:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:10:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:10:52] Further information can be found at the LHC@home message board.
[2025-11-26 06:10:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:10:52] Checking for apptainer binary...
[2025-11-26 06:10:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:10:52] Running /usr/bin/apptainer --version
[2025-11-26 06:10:52] apptainer version 1.4.4-1.el9
[2025-11-26 06:10:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:10:53] c6-12-27-4.aglt2.org
[2025-11-26 06:10:53] apptainer works
[2025-11-26 06:10:53] Set ATHENA_PROC_NUMBER=8
[2025-11-26 06:10:53] Set ATHENA_CORE_NUMBER=8
[2025-11-26 06:10:53] Starting ATLAS job with PandaID=6896298610
[2025-11-26 06:10:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:00:10 (2478765): BOINC client no longer exists - exiting
14:00:10 (2478765): timer handler: client dead, exiting
14:10:03 (629826): wrapper (7.7.26015): starting
14:10:03 (629826): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 14:10:03] Arguments: --nthreads 10
[2025-11-26 14:10:03] Threads: 10
[2025-11-26 14:10:03] This job has been restarted, cleaning up previous attempt
[2025-11-26 14:10:03] Checking for CVMFS
[2025-11-26 14:10:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:10:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:10:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:10:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:10:04] 2.13.3.0 12601 30452 364708 153332 3 110 31366122 32935937 33116 16776704 0 145660603 99.494 182992717 33903 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 14:10:04] CVMFS is ok
[2025-11-26 14:10:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:10:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:10:04] Further information can be found at the LHC@home message board.
[2025-11-26 14:10:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:10:04] Checking for apptainer binary...
[2025-11-26 14:10:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:10:04] Running /usr/bin/apptainer --version
[2025-11-26 14:10:04] apptainer version 1.4.4-1.el9
[2025-11-26 14:10:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:10:04] c6-12-27-4.aglt2.org
[2025-11-26 14:10:04] apptainer works
[2025-11-26 14:10:04] Set ATHENA_PROC_NUMBER=10
[2025-11-26 14:10:04] Set ATHENA_CORE_NUMBER=10
[2025-11-26 14:10:04] Starting ATLAS job with PandaID=6896298610
[2025-11-26 14:10:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:21:31]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:21:31] 2025-11-27 21:20:22,946 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6896298610/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:21:31] 2025-11-27 21:20:22,947 | INFO     | extracted standard info from prmon json
[2025-11-27 16:21:31] 2025-11-27 21:20:22,947 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:21:31] 2025-11-27 21:20:22,948 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:21:31] 2025-11-27 21:20:22,973 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:21:31] 2025-11-27 21:20:22,977 | INFO     | sum of square deviations: 1141455724664.6514
[2025-11-27 16:21:31] 2025-11-27 21:20:23,045 | INFO     | sum of deviations: 6182397248621.685
[2025-11-27 16:21:31] 2025-11-27 21:20:23,045 | INFO     | mean x: 1764231329.142487
[2025-11-27 16:21:31] 2025-11-27 21:20:23,045 | INFO     | mean y: 3264765.4559585494
[2025-11-27 16:21:31] 2025-11-27 21:20:23,046 | INFO     | intersect: -9552234129.104416
[2025-11-27 16:21:31] 2025-11-27 21:20:23,048 | INFO     | chi2: 9.799337322920309
[2025-11-27 16:21:31] 2025-11-27 21:20:23,054 | INFO     | sum of square deviations: 1130405498916.5352
[2025-11-27 16:21:31] 2025-11-27 21:20:23,148 | INFO     | sum of deviations: 6813039108990.06
[2025-11-27 16:21:31] 2025-11-27 21:20:23,149 | INFO     | mean x: 1764231176.65757
[2025-11-27 16:21:31] 2025-11-27 21:20:23,149 | INFO     | mean y: 3273467.8141650422
[2025-11-27 16:21:31] 2025-11-27 21:20:23,149 | INFO     | intersect: -10629880754.62037
[2025-11-27 16:21:31] 2025-11-27 21:20:23,151 | INFO     | chi2: 6.190361629272275
[2025-11-27 16:21:31] 2025-11-27 21:20:23,151 | INFO     | current chi2=6.190361629272275 (change=36.82877295392991 %)
[2025-11-27 16:21:31] 2025-11-27 21:20:23,158 | INFO     | sum of square deviations: 1119426667919.9102
[2025-11-27 16:21:31] 2025-11-27 21:20:23,255 | INFO     | sum of deviations: 7123277433567.517
[2025-11-27 16:21:31] 2025-11-27 21:20:23,255 | INFO     | mean x: 1764231024.1714473
[2025-11-27 16:21:31] 2025-11-27 21:20:23,255 | INFO     | mean y: 3277775.76988266
[2025-11-27 16:21:31] 2025-11-27 21:20:23,256 | INFO     | intersect: -11223100335.653936
[2025-11-27 16:21:31] 2025-11-27 21:20:23,262 | INFO     | chi2: 5.126197937173668
[2025-11-27 16:21:31] 2025-11-27 21:20:23,262 | INFO     | current chi2=5.126197937173668 (change=17.190654695624108 %)
[2025-11-27 16:21:31] 2025-11-27 21:20:23,262 | INFO     | right removable region: 1533
[2025-11-27 16:21:31] 2025-11-27 21:20:23,266 | INFO     | sum of square deviations: 1130401220384.8533
[2025-11-27 16:21:31] 2025-11-27 21:20:23,322 | INFO     | time since job start (94202s) is within the limit (172800.0s)
[2025-11-27 16:21:31] 2025-11-27 21:20:23,363 | INFO     | sum of deviations: 5653454020252.389
[2025-11-27 16:21:31] 2025-11-27 21:20:23,364 | INFO     | mean x: 1764231481.6569202
[2025-11-27 16:21:31] 2025-11-27 21:20:23,364 | INFO     | mean y: 3272058.1598440544
[2025-11-27 16:21:31] 2025-11-27 21:20:23,364 | INFO     | intersect: -8820145134.572329
[2025-11-27 16:21:31] 2025-11-27 21:20:23,368 | INFO     | chi2: 7.247203676444562
[2025-11-27 16:21:31] 2025-11-27 21:20:23,369 | INFO     | current chi2=7.247203676444562 (change=26.043941160249627 %)
[2025-11-27 16:21:31] 2025-11-27 21:20:23,370 | INFO     | sum of square deviations: 1119419331086.6033
[2025-11-27 16:21:31] 2025-11-27 21:20:23,469 | INFO     | sum of deviations: 5461771566672.055
[2025-11-27 16:21:31] 2025-11-27 21:20:23,470 | INFO     | mean x: 1764231634.1642764
[2025-11-27 16:21:31] 2025-11-27 21:20:23,470 | INFO     | mean y: 3274719.971968709
[2025-11-27 16:21:31] 2025-11-27 21:20:23,474 | INFO     | intersect: -8604607874.96988
[2025-11-27 16:21:31] 2025-11-27 21:20:23,476 | INFO     | chi2: 7.078171279840525
[2025-11-27 16:21:31] 2025-11-27 21:20:23,477 | INFO     | current chi2=7.078171279840525 (change=2.332380931329966 %)
[2025-11-27 16:21:31] 2025-11-27 21:20:23,477 | INFO     | left removable region: 20
[2025-11-27 16:21:31] 2025-11-27 21:20:23,481 | INFO     | sum of square deviations: 1074080062849.7717
[2025-11-27 16:21:31] 2025-11-27 21:20:23,576 | INFO     | monitor loop #4698: job 0:6896298610 is in state 'finished'
[2025-11-27 16:21:31] 2025-11-27 21:20:23,576 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:21:31] 2025-11-27 21:20:23,578 | INFO     | sum of deviations: 6120311950193.433
[2025-11-27 16:21:31] 2025-11-27 21:20:23,579 | INFO     | mean x: 1764231603.699934
[2025-11-27 16:21:31] 2025-11-27 21:20:23,579 | INFO     | mean y: 3293380.3688037014
[2025-11-27 16:21:31] 2025-11-27 21:20:23,579 | INFO     | intersect: -10049632970.749832
[2025-11-27 16:21:31] 2025-11-27 21:20:23,581 | INFO     | chi2: 2.0112363020369934
[2025-11-27 16:21:31] 2025-11-27 21:20:23,585 | INFO     | current memory leak: 5.70 B/s (using 1513 data points, chi2=2.01)
[2025-11-27 16:21:31] 2025-11-27 21:20:23,587 | INFO     | could have reported an average CPU frequency of 2634 MHz (55 samples)
[2025-11-27 16:21:31] 2025-11-27 21:20:23,587 | INFO     | ..............................
[2025-11-27 16:21:31] 2025-11-27 21:20:23,587 | INFO     | . Timing measurements:
[2025-11-27 16:21:31] 2025-11-27 21:20:23,588 | INFO     | . get job = 0 s
[2025-11-27 16:21:31] 2025-11-27 21:20:23,588 | INFO     | . initial setup = 2 s
[2025-11-27 16:21:31] 2025-11-27 21:20:23,588 | INFO     | . payload setup = 9 s
[2025-11-27 16:21:31] 2025-11-27 21:20:23,588 | INFO     | . stage-in = 0 s
[2025-11-27 16:21:31] 2025-11-27 21:20:23,588 | INFO     | . payload execution = 94154 s
[2025-11-27 16:21:31] 2025-11-27 21:20:23,588 | INFO     | . stage-out = 7 s
[2025-11-27 16:21:31] 2025-11-27 21:20:23,588 | INFO     | . log creation = 1 s
[2025-11-27 16:21:31] 2025-11-27 21:20:23,588 | INFO     | ..............................
[2025-11-27 16:21:31] 2025-11-27 21:20:23,794 | INFO     | 
[2025-11-27 16:21:31] 2025-11-27 21:20:23,794 | INFO     | job summary report
[2025-11-27 16:21:31] 2025-11-27 21:20:23,794 | INFO     | --------------------------------------------------
[2025-11-27 16:21:31] 2025-11-27 21:20:23,794 | INFO     | PanDA job id: 6896298610
[2025-11-27 16:21:31] 2025-11-27 21:20:23,794 | INFO     | task id: 47556149
[2025-11-27 16:21:31] 2025-11-27 21:20:23,794 | INFO     | errors: (none)
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | pilot state: finished 
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | transexitcode: 0
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | exeerrorcode: 0
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | exeerrordiag: 
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | exitcode: 0
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | exitmsg: OK
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | cpuconsumptiontime: 270892 s
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | nevents: 1000
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | neventsw: 0
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | pid: 698262
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | pgrp: 698262
[2025-11-27 16:21:31] 2025-11-27 21:20:23,795 | INFO     | corecount: 10
[2025-11-27 16:21:31] 2025-11-27 21:20:23,796 | INFO     | event service: False
[2025-11-27 16:21:31] 2025-11-27 21:20:23,796 | INFO     | sizes: {0: 2284308, 7: 2284570, 11: 2284598, 94167: 2350576, 94175: 2359626, 94184: 2359816}
[2025-11-27 16:21:31] 2025-11-27 21:20:23,796 | INFO     | --------------------------------------------------
[2025-11-27 16:21:31] 2025-11-27 21:20:23,796 | INFO     | 
[2025-11-27 16:21:31] 2025-11-27 21:20:23,796 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 16:21:31] 2025-11-27 21:20:23,947 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,947 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,947 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,947 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,947 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,947 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,947 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,947 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,948 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:21:31] 2025-11-27 21:20:23,949 | INFO     | job 6896298610 has completed (purged errors)
[2025-11-27 16:21:31] 2025-11-27 21:20:23,949 | INFO     | overall cleanup function is called
[2025-11-27 16:21:31] 2025-11-27 21:20:24,994 | INFO     | --- collectZombieJob: --- 10, [698262]
[2025-11-27 16:21:31] 2025-11-27 21:20:24,994 | INFO     | zombie collector waiting for pid 698262
[2025-11-27 16:21:31] 2025-11-27 21:20:24,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:21:31] 2025-11-27 21:20:24,994 | INFO     | collected zombie processes
[2025-11-27 16:21:31] 2025-11-27 21:20:24,995 | INFO     | will attempt to kill all subprocesses of pid=698262
[2025-11-27 16:21:31] 2025-11-27 21:20:26,008 | INFO     | PID=653050 has CPU usage=22.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:21:31] 2025-11-27 21:20:26,009 | INFO     | .. there are 53 such processes running
[2025-11-27 16:21:31] 2025-11-27 21:20:26,371 | INFO     | process IDs to be killed: [698262] (in reverse order)
[2025-11-27 16:21:31] 2025-11-27 21:20:26,569 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:21:31] 2025-11-27 21:20:26,570 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:21:31] 2025-11-27 21:20:26,593 | INFO     | did not find any defunct processes belonging to 698262
[2025-11-27 16:21:31] 2025-11-27 21:20:26,657 | INFO     | did not find any defunct processes belonging to 698262
[2025-11-27 16:21:31] 2025-11-27 21:20:26,674 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:21:31] 2025-11-27 21:20:26,674 | INFO     | ready for new job
[2025-11-27 16:21:31] 2025-11-27 21:20:26,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:21:31] 2025-11-27 21:20:26,691 | INFO     | ***************************************
[2025-11-27 16:21:31] 2025-11-27 21:20:26,691 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:21:31] 2025-11-27 21:20:26,691 | INFO     | ***************************************
[2025-11-27 16:21:31] 2025-11-27 21:20:26,691 | INFO     | 
[2025-11-27 16:21:31] 2025-11-27 21:20:26,697 | INFO     | architecture information:
[2025-11-27 16:21:31] 2025-11-27 21:20:26,701 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:21:31] 2025-11-27 21:20:26,737 | INFO     | cat /etc/os-release:
[2025-11-27 16:21:31] NAME="CentOS Linux"
[2025-11-27 16:21:31] VERSION="7 (Core)"
[2025-11-27 16:21:31] ID="centos"
[2025-11-27 16:21:31] ID_LIKE="rhel fedora"
[2025-11-27 16:21:31] VERSION_ID="7"
[2025-11-27 16:21:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:21:31] ANSI_COLOR="0;31"
[2025-11-27 16:21:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:21:31] HOME_URL="https://www.centos.org/"
[2025-11-27 16:21:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:21:31] 
[2025-11-27 16:21:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:21:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:21:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:21:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:21:31] 
[2025-11-27 16:21:31] 2025-11-27 21:20:26,738 | INFO     | ***************************************
[2025-11-27 16:21:31] 2025-11-27 21:20:27,241 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 16:21:31] 2025-11-27 21:20:27,266 | INFO     | sufficient remaining disk space (84231061504 B)
[2025-11-27 16:21:31] 2025-11-27 21:20:27,267 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:21:31] 2025-11-27 21:20:27,267 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:21:31] 2025-11-27 21:20:27,267 | INFO     | update_server=False
[2025-11-27 16:21:31] 2025-11-27 21:20:27,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:21:31] 2025-11-27 21:20:27,268 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:21:31] 2025-11-27 21:20:27,269 | INFO     | aborting loop
[2025-11-27 16:21:31] 2025-11-27 21:20:27,445 | INFO     | all payload control threads have been joined
[2025-11-27 16:21:31] 2025-11-27 21:20:27,624 | INFO     | all job control threads have been joined
[2025-11-27 16:21:31] 2025-11-27 21:20:27,826 | INFO     | all data control threads have been joined
[2025-11-27 16:21:31] 2025-11-27 21:20:27,919 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:21:31] 2025-11-27 21:20:28,273 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:28,276 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:28,451 | INFO     | [payload] control thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:28,630 | INFO     | [job] control thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:28,781 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:28,814 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:21:31] 2025-11-27 21:20:28,832 | INFO     | [data] control thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:29,192 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:29,446 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:29,485 | INFO     | [job] validate thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:29,489 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:29,515 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:29,516 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:29,516 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:29,820 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:29,926 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:20:30,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:21:31] 2025-11-27 21:20:34,124 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:21:31] 2025-11-27 21:21:00,159 | INFO     | PID=653050 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 16:21:31] 2025-11-27 21:21:00,159 | INFO     | .. there are 53 such processes running
[2025-11-27 16:21:31] 2025-11-27 21:21:00,159 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:21:31] 2025-11-27 21:21:00,159 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:21:31] 2025-11-27 21:21:00,159 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:21:31] 2025-11-27 21:21:24,818 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:21:31] 2025-11-27 21:21:25,354 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140337767540544)>', '<ExcThread(monitor, started 140337418843904)>']
[2025-11-27 16:21:31] 2025-11-27 21:21:26,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:21:31] 2025-11-27 21:21:26,331 | INFO     | [monitor] control thread has ended
[2025-11-27 16:21:31] 2025-11-27 21:21:30,389 | INFO     | all workflow threads have been joined
[2025-11-27 16:21:31] 2025-11-27 21:21:30,389 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:21:31] 2025-11-27 21:21:30,390 | INFO     | traces error code: 0
[2025-11-27 16:21:31] 2025-11-27 21:21:30,390 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:21:31] 2025-11-27 21:21:30,777 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:21:31] 2025-11-27 21:21:30,780 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:21:31] 2025-11-27 21:21:30,782 [wrapper] pilotpid: 653050
[2025-11-27 16:21:31] 2025-11-27 21:21:30,784 [wrapper] Pilot exit status: 0
[2025-11-27 16:21:31] 2025-11-27 21:21:30,853 [wrapper] pandaids: 6896298610 6896298610
[2025-11-27 16:21:31] 2025-11-27 21:21:30,964 [wrapper] cleanup supervisor_pilot   92148 653051
[2025-11-27 16:21:31] 2025-11-27 21:21:30,968 [wrapper] Test setup, not cleaning
[2025-11-27 16:21:31] 2025-11-27 21:21:30,971 [wrapper] apfmon messages muted
[2025-11-27 16:21:31] 2025-11-27 21:21:30,977 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:21:31] 2025-11-27 21:21:30,981 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:21:31]  *** Error codes and diagnostics ***
[2025-11-27 16:21:31]     "exeErrorCode": 0,
[2025-11-27 16:21:31]     "exeErrorDiag": "",
[2025-11-27 16:21:31]     "pilotErrorCode": 0,
[2025-11-27 16:21:31]     "pilotErrorDiag": "",
[2025-11-27 16:21:31]  *** Listing of results directory ***
[2025-11-27 16:21:31] total 1739784
[2025-11-27 16:21:31] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 20:13 pilot3.tar.gz
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 20:56 queuedata.json
[2025-11-27 16:21:31] -rwx------. 1 boincer umatlas     36292 Nov 24 20:57 runpilot2-wrapper.sh
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas       100 Nov 26 06:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:21:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 06:10 run_atlas
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas       105 Nov 26 06:10 job.xml
[2025-11-27 16:21:31] -rw-r--r--. 3 boincer umatlas 410327525 Nov 26 06:10 EVNT.47483658._001479.pool.root.1
[2025-11-27 16:21:31] -rw-r--r--. 3 boincer umatlas 410327525 Nov 26 06:10 ATLAS.root_0
[2025-11-27 16:21:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 06:10 start_atlas.sh
[2025-11-27 16:21:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 06:10 shared
[2025-11-27 16:21:31] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 06:10 input.tar.gz
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas         0 Nov 26 06:10 boinc_lockfile
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 14:10 pandaJob.out
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas        57 Nov 26 14:10 setup.sh.local
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas    991522 Nov 26 14:10 agis_schedconf.cvmfs.json
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas       534 Nov 27 15:46 boinc_task_state.xml
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas 930387391 Nov 27 16:19 HITS.47556149._004651.pool.root.1
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas      1065 Nov 27 16:20 memory_monitor_summary.json
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas        96 Nov 27 16:20 pilot_heartbeat.json
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:20 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas   2669634 Nov 27 16:20 log.47556149._004651.job.log.tgz.1
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas      8645 Nov 27 16:20 heartbeat.json
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 16:21 init_data.xml
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:21 boinc_mmap_file
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:21 wrapper_checkpoint.txt
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas      4823 Nov 27 16:21 pilotlog.txt
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas  10613941 Nov 27 16:21 log.47556149._004651.job.log.1
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas       353 Nov 27 16:21 output.list
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:21 runtime_log
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas  13301760 Nov 27 16:21 result.tar.gz
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas      9440 Nov 27 16:21 runtime_log.err
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas       790 Nov 27 16:21 aIMLDmdUxh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmh3LKDm0aobyn.diag
[2025-11-27 16:21:31] -rw-r--r--. 1 boincer umatlas     23676 Nov 27 16:21 stderr.txt
[2025-11-27 16:21:31] HITS file was successfully produced:
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas 930387391 Nov 27 16:19 shared/HITS.pool.root.1
[2025-11-27 16:21:31]  *** Contents of shared directory: ***
[2025-11-27 16:21:31] total 1322892
[2025-11-27 16:21:31] -rw-r--r--. 3 boincer umatlas 410327525 Nov 26 06:10 ATLAS.root_0
[2025-11-27 16:21:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 06:10 start_atlas.sh
[2025-11-27 16:21:31] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 06:10 input.tar.gz
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas 930387391 Nov 27 16:19 HITS.pool.root.1
[2025-11-27 16:21:31] -rw-------. 1 boincer umatlas  13301760 Nov 27 16:21 result.tar.gz
16:21:32 (629826): run_atlas exited; CPU time 274311.810754
16:21:32 (629826): called boinc_finish(0)

</stderr_txt>
]]>

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