Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:04:42 (2679532): wrapper (7.7.26015): starting
07:04:42 (2679532): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:04:42] Arguments: --nthreads 8
[2025-11-26 07:04:42] Threads: 8
[2025-11-26 07:04:42] Checking for CVMFS
[2025-11-26 07:04:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:04:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:04:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:04:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:04:44] 2.13.3.0 15513 29974 380048 153320 1 300 28009995 40960001 50959 16776704 0 296699254 99.866 99493252 31721 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 07:04:44] CVMFS is ok
[2025-11-26 07:04:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:04:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:04:44] Further information can be found at the LHC@home message board.
[2025-11-26 07:04:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:04:44] Checking for apptainer binary...
[2025-11-26 07:04:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:04:44] Running /usr/bin/apptainer --version
[2025-11-26 07:04:44] apptainer version 1.4.4-1.el9
[2025-11-26 07:04:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:04:45] c-1-1.aglt2.org
[2025-11-26 07:04:45] apptainer works
[2025-11-26 07:04:45] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:04:45] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:04:45] Starting ATLAS job with PandaID=6896989475
[2025-11-26 07:04:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:06:24]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:06:24] 2025-11-27 03:05:25,064 | INFO     | monitor loop #3040: job 0:6896989475 is in state 'finished'
[2025-11-26 22:06:24] 2025-11-27 03:05:25,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:06:24] 2025-11-27 03:05:25,548 | INFO     | time since job start (53985s) is within the limit (172800.0s)
[2025-11-26 22:06:24] 2025-11-27 03:05:27,556 | INFO     | time since job start (53987s) is within the limit (172800.0s)
[2025-11-26 22:06:24] 2025-11-27 03:05:27,588 | INFO     | monitor loop #3041: job 0:6896989475 is in state 'finished'
[2025-11-26 22:06:24] 2025-11-27 03:05:27,588 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:06:24] 2025-11-27 03:05:29,563 | INFO     | time since job start (53989s) is within the limit (172800.0s)
[2025-11-26 22:06:24] 2025-11-27 03:05:30,121 | INFO     | monitor loop #3042: job 0:6896989475 is in state 'finished'
[2025-11-26 22:06:24] 2025-11-27 03:05:30,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:06:24] 2025-11-27 03:05:30,705 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 22:06:24] 2025-11-27 03:05:30,727 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2906.063649999999
[2025-11-26 22:06:24] 2025-11-27 03:05:30,747 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896989475/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:06:24] 2025-11-27 03:05:30,748 | INFO     | extracted standard info from prmon json
[2025-11-26 22:06:24] 2025-11-27 03:05:30,749 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:06:24] 2025-11-27 03:05:30,749 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:06:24] 2025-11-27 03:05:30,790 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:06:24] 2025-11-27 03:05:30,791 | INFO     | sum of square deviations: 213479417660.6907
[2025-11-26 22:06:24] 2025-11-27 03:05:30,868 | INFO     | sum of deviations: 770076645030.9812
[2025-11-26 22:06:24] 2025-11-27 03:05:30,868 | INFO     | mean x: 1764185758.038505
[2025-11-26 22:06:24] 2025-11-27 03:05:30,868 | INFO     | mean y: 2860062.5594563987
[2025-11-26 22:06:24] 2025-11-27 03:05:30,869 | INFO     | intersect: -6361023934.543512
[2025-11-26 22:06:24] 2025-11-27 03:05:30,870 | INFO     | chi2: 14.00307425799998
[2025-11-26 22:06:24] 2025-11-27 03:05:30,871 | INFO     | sum of square deviations: 209873936237.29504
[2025-11-26 22:06:24] 2025-11-27 03:05:30,897 | INFO     | sum of deviations: 1054067882270.077
[2025-11-26 22:06:24] 2025-11-27 03:05:30,897 | INFO     | mean x: 1764185605.550114
[2025-11-26 22:06:24] 2025-11-27 03:05:30,897 | INFO     | mean y: 2872070.202733485
[2025-11-26 22:06:24] 2025-11-27 03:05:30,897 | INFO     | intersect: -8857548706.72989
[2025-11-26 22:06:24] 2025-11-27 03:05:30,898 | INFO     | chi2: 10.948815585655776
[2025-11-26 22:06:24] 2025-11-27 03:05:30,898 | INFO     | current chi2=10.948815585655776 (change=21.811343824012795 %)
[2025-11-26 22:06:24] 2025-11-27 03:05:30,898 | INFO     | right removable region: 877
[2025-11-26 22:06:24] 2025-11-27 03:05:30,899 | INFO     | sum of square deviations: 209872838237.29507
[2025-11-26 22:06:24] 2025-11-27 03:05:30,930 | INFO     | sum of deviations: 439172101215.69196
[2025-11-26 22:06:24] 2025-11-27 03:05:30,931 | INFO     | mean x: 1764185910.550114
[2025-11-26 22:06:24] 2025-11-27 03:05:30,931 | INFO     | mean y: 2874052.0523917996
[2025-11-26 22:06:24] 2025-11-27 03:05:30,931 | INFO     | intersect: -3688795817.0871167
[2025-11-26 22:06:24] 2025-11-27 03:05:30,932 | INFO     | chi2: 10.391961029029163
[2025-11-26 22:06:24] 2025-11-27 03:05:30,932 | INFO     | current chi2=10.391961029029163 (change=25.78800313729524 %)
[2025-11-26 22:06:24] 2025-11-27 03:05:30,933 | INFO     | sum of square deviations: 206307310665.13556
[2025-11-26 22:06:24] 2025-11-27 03:05:30,999 | INFO     | sum of deviations: 330690435529.40594
[2025-11-26 22:06:24] 2025-11-27 03:05:30,999 | INFO     | mean x: 1764186063.0572739
[2025-11-26 22:06:24] 2025-11-27 03:05:30,999 | INFO     | mean y: 2878683.4318442154
[2025-11-26 22:06:24] 2025-11-27 03:05:31,000 | INFO     | intersect: -2824938981.712623
[2025-11-26 22:06:24] 2025-11-27 03:05:31,001 | INFO     | chi2: 9.911967429836906
[2025-11-26 22:06:24] 2025-11-27 03:05:31,001 | INFO     | current chi2=9.911967429836906 (change=4.618893372015454 %)
[2025-11-26 22:06:24] 2025-11-27 03:05:31,001 | INFO     | left removable region: 20
[2025-11-26 22:06:24] 2025-11-27 03:05:31,002 | INFO     | sum of square deviations: 195170613462.28122
[2025-11-26 22:06:24] 2025-11-27 03:05:31,086 | INFO     | sum of deviations: 577917255024.6237
[2025-11-26 22:06:24] 2025-11-27 03:05:31,086 | INFO     | mean x: 1764186185.0816803
[2025-11-26 22:06:24] 2025-11-27 03:05:31,086 | INFO     | mean y: 2897403.7339556594
[2025-11-26 22:06:24] 2025-11-27 03:05:31,086 | INFO     | intersect: -5221012176.443733
[2025-11-26 22:06:24] 2025-11-27 03:05:31,087 | INFO     | chi2: 6.171819866488943
[2025-11-26 22:06:24] 2025-11-27 03:05:31,087 | INFO     | current memory leak: 2.96 B/s (using 857 data points, chi2=6.17)
[2025-11-26 22:06:24] 2025-11-27 03:05:31,090 | INFO     | could have reported an average CPU frequency of 2942 MHz (33 samples)
[2025-11-26 22:06:24] 2025-11-27 03:05:31,091 | INFO     | ..............................
[2025-11-26 22:06:24] 2025-11-27 03:05:31,091 | INFO     | . Timing measurements:
[2025-11-26 22:06:24] 2025-11-27 03:05:31,091 | INFO     | . get job = 0 s
[2025-11-26 22:06:24] 2025-11-27 03:05:31,091 | INFO     | . initial setup = 3 s
[2025-11-26 22:06:24] 2025-11-27 03:05:31,092 | INFO     | . payload setup = 30 s
[2025-11-26 22:06:24] 2025-11-27 03:05:31,092 | INFO     | . stage-in = 0 s
[2025-11-26 22:06:24] 2025-11-27 03:05:31,092 | INFO     | . payload execution = 53855 s
[2025-11-26 22:06:24] 2025-11-27 03:05:31,092 | INFO     | . stage-out = 9 s
[2025-11-26 22:06:24] 2025-11-27 03:05:31,092 | INFO     | . log creation = 2 s
[2025-11-26 22:06:24] 2025-11-27 03:05:31,094 | INFO     | ..............................
[2025-11-26 22:06:24] 2025-11-27 03:05:31,434 | INFO     | 
[2025-11-26 22:06:24] 2025-11-27 03:05:31,434 | INFO     | job summary report
[2025-11-26 22:06:24] 2025-11-27 03:05:31,434 | INFO     | --------------------------------------------------
[2025-11-26 22:06:24] 2025-11-27 03:05:31,434 | INFO     | PanDA job id: 6896989475
[2025-11-26 22:06:24] 2025-11-27 03:05:31,435 | INFO     | task id: 47556161
[2025-11-26 22:06:24] 2025-11-27 03:05:31,435 | INFO     | errors: (none)
[2025-11-26 22:06:24] 2025-11-27 03:05:31,435 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:06:24] 2025-11-27 03:05:31,435 | INFO     | pilot state: finished 
[2025-11-26 22:06:24] 2025-11-27 03:05:31,435 | INFO     | transexitcode: 0
[2025-11-26 22:06:24] 2025-11-27 03:05:31,435 | INFO     | exeerrorcode: 0
[2025-11-26 22:06:24] 2025-11-27 03:05:31,435 | INFO     | exeerrordiag: 
[2025-11-26 22:06:24] 2025-11-27 03:05:31,435 | INFO     | exitcode: 0
[2025-11-26 22:06:24] 2025-11-27 03:05:31,435 | INFO     | exitmsg: OK
[2025-11-26 22:06:24] 2025-11-27 03:05:31,435 | INFO     | cpuconsumptiontime: 248216 s
[2025-11-26 22:06:24] 2025-11-27 03:05:31,435 | INFO     | nevents: 1000
[2025-11-26 22:06:24] 2025-11-27 03:05:31,436 | INFO     | neventsw: 0
[2025-11-26 22:06:24] 2025-11-27 03:05:31,436 | INFO     | pid: 2707614
[2025-11-26 22:06:24] 2025-11-27 03:05:31,436 | INFO     | pgrp: 2707614
[2025-11-26 22:06:24] 2025-11-27 03:05:31,436 | INFO     | corecount: 8
[2025-11-26 22:06:24] 2025-11-27 03:05:31,436 | INFO     | event service: False
[2025-11-26 22:06:24] 2025-11-27 03:05:31,436 | INFO     | sizes: {0: 2284042, 1: 2284241, 12: 2284241, 23: 2284269, 30: 2284559, 34: 2284587, 53887: 2332173, 53898: 2341167, 53899: 2341223, 53932: 2341533}
[2025-11-26 22:06:24] 2025-11-27 03:05:31,436 | INFO     | --------------------------------------------------
[2025-11-26 22:06:24] 2025-11-27 03:05:31,436 | INFO     | 
[2025-11-26 22:06:24] 2025-11-27 03:05:31,436 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 22:06:24] 2025-11-27 03:05:31,528 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,529 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,529 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,529 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,530 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,530 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,530 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,530 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,530 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,530 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,530 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,530 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,530 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,530 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,530 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:06:24] 2025-11-27 03:05:31,531 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,553 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:06:24] 2025-11-27 03:05:31,553 | INFO     | job 6896989475 has completed (purged errors)
[2025-11-26 22:06:24] 2025-11-27 03:05:31,554 | INFO     | overall cleanup function is called
[2025-11-26 22:06:24] 2025-11-27 03:05:32,581 | INFO     | --- collectZombieJob: --- 10, [2707614]
[2025-11-26 22:06:24] 2025-11-27 03:05:32,581 | INFO     | zombie collector waiting for pid 2707614
[2025-11-26 22:06:24] 2025-11-27 03:05:32,581 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:06:24] 2025-11-27 03:05:32,581 | INFO     | collected zombie processes
[2025-11-26 22:06:24] 2025-11-27 03:05:32,581 | INFO     | will attempt to kill all subprocesses of pid=2707614
[2025-11-26 22:06:24] 2025-11-27 03:05:34,059 | INFO     | process IDs to be killed: [2707614] (in reverse order)
[2025-11-26 22:06:24] 2025-11-27 03:05:34,442 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:06:24] 2025-11-27 03:05:34,442 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:06:24] 2025-11-27 03:05:34,534 | INFO     | did not find any defunct processes belonging to 2707614
[2025-11-26 22:06:24] 2025-11-27 03:05:34,639 | INFO     | did not find any defunct processes belonging to 2707614
[2025-11-26 22:06:24] 2025-11-27 03:05:34,640 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:06:24] 2025-11-27 03:05:34,641 | INFO     | ready for new job
[2025-11-26 22:06:24] 2025-11-27 03:05:34,641 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:06:24] 2025-11-27 03:05:34,645 | INFO     | ***************************************
[2025-11-26 22:06:24] 2025-11-27 03:05:34,645 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:06:24] 2025-11-27 03:05:34,645 | INFO     | ***************************************
[2025-11-26 22:06:24] 2025-11-27 03:05:34,645 | INFO     | 
[2025-11-26 22:06:24] 2025-11-27 03:05:34,650 | INFO     | architecture information:
[2025-11-26 22:06:24] 2025-11-27 03:05:34,651 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:06:24] 2025-11-27 03:05:34,777 | INFO     | cat /etc/os-release:
[2025-11-26 22:06:24] NAME="CentOS Linux"
[2025-11-26 22:06:24] VERSION="7 (Core)"
[2025-11-26 22:06:24] ID="centos"
[2025-11-26 22:06:24] ID_LIKE="rhel fedora"
[2025-11-26 22:06:24] VERSION_ID="7"
[2025-11-26 22:06:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:06:24] ANSI_COLOR="0;31"
[2025-11-26 22:06:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:06:24] HOME_URL="https://www.centos.org/"
[2025-11-26 22:06:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:06:24] 
[2025-11-26 22:06:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:06:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:06:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:06:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:06:24] 
[2025-11-26 22:06:24] 2025-11-27 03:05:34,778 | INFO     | ***************************************
[2025-11-26 22:06:24] 2025-11-27 03:05:35,283 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 22:06:24] 2025-11-27 03:05:35,313 | INFO     | sufficient remaining disk space (99137617920 B)
[2025-11-26 22:06:24] 2025-11-27 03:05:35,313 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:06:24] 2025-11-27 03:05:35,313 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:06:24] 2025-11-27 03:05:35,314 | INFO     | update_server=False
[2025-11-26 22:06:24] 2025-11-27 03:05:35,314 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:06:24] 2025-11-27 03:05:35,314 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:06:24] 2025-11-27 03:05:35,648 | INFO     | all data control threads have been joined
[2025-11-26 22:06:24] 2025-11-27 03:05:36,013 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:06:24] 2025-11-27 03:05:36,051 | INFO     | all job control threads have been joined
[2025-11-26 22:06:24] 2025-11-27 03:05:36,193 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:06:24] 2025-11-27 03:05:36,193 | INFO     | aborting loop
[2025-11-26 22:06:24] 2025-11-27 03:05:36,320 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:36,425 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:06:24] 2025-11-27 03:05:36,653 | INFO     | [data] control thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:36,681 | INFO     | all payload control threads have been joined
[2025-11-26 22:06:24] 2025-11-27 03:05:36,880 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,057 | INFO     | [job] control thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,094 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,156 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,196 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,199 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,320 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,433 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,485 | INFO     | [job] validate thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,527 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,727 | INFO     | [payload] control thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,727 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:37,928 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:05:39,646 [wrapper] supervise_pilot (15 min periods counter: 61)
[2025-11-26 22:06:24] 2025-11-27 03:05:40,026 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:06:24] 2025-11-27 03:06:04,246 | INFO     | PID=2689355 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:06:24] 2025-11-27 03:06:04,246 | INFO     | .. there are 83 such processes running
[2025-11-26 22:06:24] 2025-11-27 03:06:04,247 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:06:24] 2025-11-27 03:06:04,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:06:24] 2025-11-27 03:06:04,247 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:06:24] 2025-11-27 03:06:16,883 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:06:24] 2025-11-27 03:06:17,863 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140276215613248)>', '<ExcThread(monitor, started 140275502540544)>']
[2025-11-26 22:06:24] 2025-11-27 03:06:18,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:06:24] 2025-11-27 03:06:18,364 | INFO     | [monitor] control thread has ended
[2025-11-26 22:06:24] 2025-11-27 03:06:22,894 | INFO     | all workflow threads have been joined
[2025-11-26 22:06:24] 2025-11-27 03:06:22,894 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:06:24] 2025-11-27 03:06:22,894 | INFO     | traces error code: 0
[2025-11-26 22:06:24] 2025-11-27 03:06:22,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:06:24] 2025-11-27 03:06:23,363 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:06:24] 2025-11-27 03:06:23,382 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:06:24] 2025-11-27 03:06:23,402 [wrapper] pilotpid: 2689355
[2025-11-26 22:06:24] 2025-11-27 03:06:23,431 [wrapper] Pilot exit status: 0
[2025-11-26 22:06:24] 2025-11-27 03:06:23,556 [wrapper] pandaids: 6896989475
[2025-11-26 22:06:24] 2025-11-27 03:06:24,020 [wrapper] cleanup supervisor_pilot  629382 2689356
[2025-11-26 22:06:24] 2025-11-27 03:06:24,040 [wrapper] Test setup, not cleaning
[2025-11-26 22:06:24] 2025-11-27 03:06:24,071 [wrapper] apfmon messages muted
[2025-11-26 22:06:24] 2025-11-27 03:06:24,093 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:06:24] 2025-11-27 03:06:24,119 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:06:24]  *** Error codes and diagnostics ***
[2025-11-26 22:06:24]     "exeErrorCode": 0,
[2025-11-26 22:06:24]     "exeErrorDiag": "",
[2025-11-26 22:06:24]     "pilotErrorCode": 0,
[2025-11-26 22:06:24]     "pilotErrorDiag": "",
[2025-11-26 22:06:24]  *** Listing of results directory ***
[2025-11-26 22:06:24] total 1310096
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 06:49 pilot3.tar.gz
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 07:12 queuedata.json
[2025-11-26 22:06:24] -rwx------. 1 boincer umatlas     36292 Nov 25 07:15 runpilot2-wrapper.sh
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas       100 Nov 26 07:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:06:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 07:04 run_atlas
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas       105 Nov 26 07:04 job.xml
[2025-11-26 22:06:24] -rw-r--r--. 2 boincer umatlas 409099021 Nov 26 07:04 EVNT.47483658._002159.pool.root.1
[2025-11-26 22:06:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 07:04 start_atlas.sh
[2025-11-26 22:06:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 07:04 shared
[2025-11-26 22:06:24] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 07:04 input.tar.gz
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas         0 Nov 26 07:04 boinc_lockfile
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 07:04 pandaJob.out
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas        57 Nov 26 07:04 setup.sh.local
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas    991830 Nov 26 07:05 agis_schedconf.cvmfs.json
[2025-11-26 22:06:24] drwx------. 5 boincer umatlas      4096 Nov 26 07:05 pilot3
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas       533 Nov 26 21:41 boinc_task_state.xml
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas      6842 Nov 26 22:02 init_data.xml
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas 911311127 Nov 26 22:03 HITS.47556161._001429.pool.root.1
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas      1058 Nov 26 22:04 memory_monitor_summary.json
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:04 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas   2048551 Nov 26 22:04 log.47556161._001429.job.log.tgz.1
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas      7955 Nov 26 22:05 heartbeat.json
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas        95 Nov 26 22:06 pilot_heartbeat.json
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:06 boinc_mmap_file
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas        29 Nov 26 22:06 wrapper_checkpoint.txt
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas      4824 Nov 26 22:06 pilotlog.txt
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas   6554325 Nov 26 22:06 log.47556161._001429.job.log.1
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas       353 Nov 26 22:06 output.list
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:06 runtime_log
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas   8622080 Nov 26 22:06 result.tar.gz
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas      9328 Nov 26 22:06 runtime_log.err
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas       657 Nov 26 22:06 3csKDmV86h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRNMKDmUzy26n.diag
[2025-11-26 22:06:24] -rw-r--r--. 1 boincer umatlas     21560 Nov 26 22:06 stderr.txt
[2025-11-26 22:06:24] HITS file was successfully produced:
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas 911311127 Nov 26 22:03 shared/HITS.pool.root.1
[2025-11-26 22:06:24]  *** Contents of shared directory: ***
[2025-11-26 22:06:24] total 1298492
[2025-11-26 22:06:24] -rw-r--r--. 2 boincer umatlas 409099021 Nov 26 07:04 ATLAS.root_0
[2025-11-26 22:06:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 07:04 start_atlas.sh
[2025-11-26 22:06:24] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 07:04 input.tar.gz
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas 911311127 Nov 26 22:03 HITS.pool.root.1
[2025-11-26 22:06:24] -rw-------. 1 boincer umatlas   8622080 Nov 26 22:06 result.tar.gz
22:06:26 (2679532): run_atlas exited; CPU time 251002.368610
22:06:26 (2679532): called boinc_finish(0)

</stderr_txt>
]]>

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