Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:30:46 (410255): wrapper (7.7.26015): starting
06:30:46 (410255): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 06:30:46] Arguments: --nthreads 8
[2025-11-26 06:30:46] Threads: 8
[2025-11-26 06:30:46] Checking for CVMFS
[2025-11-26 06:30:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:30:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:30:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:30:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:30:48] 2.13.3.0 11379 29993 336328 153320 0 404 21539700 32935937 27301 16776704 0 108019407 99.426 153871407 39211 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 06:30:48] CVMFS is ok
[2025-11-26 06:30:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:30:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:30:49] Further information can be found at the LHC@home message board.
[2025-11-26 06:30:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:30:49] Checking for apptainer binary...
[2025-11-26 06:30:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:30:49] Running /usr/bin/apptainer --version
[2025-11-26 06:30:49] apptainer version 1.4.4-1.el9
[2025-11-26 06:30:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:30:49] c6-4-5-1.aglt2.org
[2025-11-26 06:30:49] apptainer works
[2025-11-26 06:30:49] Set ATHENA_PROC_NUMBER=8
[2025-11-26 06:30:49] Set ATHENA_CORE_NUMBER=8
[2025-11-26 06:30:49] Starting ATLAS job with PandaID=6896990005
[2025-11-26 06:30:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:45:53 (3306070): wrapper (7.7.26015): starting
16:45:53 (3306070): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:45:53] Arguments: --nthreads 8
[2025-11-26 16:45:53] Threads: 8
[2025-11-26 16:45:53] This job has been restarted, cleaning up previous attempt
[2025-11-26 16:45:54] Checking for CVMFS
[2025-11-26 16:45:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:45:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:45:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:45:54] 2.13.3.0 11379 30608 329344 153335 2 451 18584503 32935936 28735 16776704 0 113219717 99.439 158163117 39170 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:45:54] CVMFS is ok
[2025-11-26 16:45:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:45:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:45:54] Further information can be found at the LHC@home message board.
[2025-11-26 16:45:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:45:54] Checking for apptainer binary...
[2025-11-26 16:45:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:45:54] Running /usr/bin/apptainer --version
[2025-11-26 16:45:54] apptainer version 1.4.4-1.el9
[2025-11-26 16:45:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:45:54] c6-4-5-1.aglt2.org
[2025-11-26 16:45:54] apptainer works
[2025-11-26 16:45:54] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:45:54] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:45:54] Starting ATLAS job with PandaID=6896990005
[2025-11-26 16:45:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:23:10]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:23:11] 2025-11-27 16:22:30,021 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:23:11] 2025-11-27 16:22:30,022 | INFO     | sum of square deviations: 410457505636.7807
[2025-11-27 11:23:11] 2025-11-27 16:22:30,061 | INFO     | sum of deviations: 1123342563171.045
[2025-11-27 11:23:11] 2025-11-27 16:22:30,062 | INFO     | mean x: 1764227050.1357012
[2025-11-27 11:23:11] 2025-11-27 16:22:30,062 | INFO     | mean y: 2896780.1876138435
[2025-11-27 11:23:11] 2025-11-27 16:22:30,064 | INFO     | intersect: -4825450391.684738
[2025-11-27 11:23:11] 2025-11-27 16:22:30,066 | INFO     | chi2: 13.25060451997193
[2025-11-27 11:23:11] 2025-11-27 16:22:30,067 | INFO     | sum of square deviations: 404875985950.8416
[2025-11-27 11:23:11] 2025-11-27 16:22:30,080 | INFO     | PID=3324637 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:23:11] 2025-11-27 16:22:30,080 | INFO     | .. there are 49 such processes running
[2025-11-27 11:23:11] 2025-11-27 16:22:30,105 | INFO     | sum of deviations: 1515064265059.4358
[2025-11-27 11:23:11] 2025-11-27 16:22:30,106 | INFO     | mean x: 1764226897.643184
[2025-11-27 11:23:11] 2025-11-27 16:22:30,106 | INFO     | mean y: 2907479.3677950595
[2025-11-27 11:23:11] 2025-11-27 16:22:30,106 | INFO     | intersect: -6598909424.636963
[2025-11-27 11:23:11] 2025-11-27 16:22:30,107 | INFO     | chi2: 9.624959740632907
[2025-11-27 11:23:11] 2025-11-27 16:22:30,110 | INFO     | current chi2=9.624959740632907 (change=27.362108452291984 %)
[2025-11-27 11:23:11] 2025-11-27 16:22:30,111 | INFO     | sum of square deviations: 399345304427.27905
[2025-11-27 11:23:11] 2025-11-27 16:22:30,161 | INFO     | sum of deviations: 1893489004255.4224
[2025-11-27 11:23:11] 2025-11-27 16:22:30,162 | INFO     | mean x: 1764226745.1507354
[2025-11-27 11:23:11] 2025-11-27 16:22:30,162 | INFO     | mean y: 2917915.034007353
[2025-11-27 11:23:11] 2025-11-27 16:22:30,162 | INFO     | intersect: -8362133347.424407
[2025-11-27 11:23:11] 2025-11-27 16:22:30,164 | INFO     | chi2: 6.324282783773396
[2025-11-27 11:23:11] 2025-11-27 16:22:30,165 | INFO     | current chi2=6.324282783773396 (change=34.29289104374445 %)
[2025-11-27 11:23:11] 2025-11-27 16:22:30,167 | INFO     | sum of square deviations: 393865228503.5921
[2025-11-27 11:23:11] 2025-11-27 16:22:30,268 | INFO     | sum of deviations: 2231426981811.991
[2025-11-27 11:23:11] 2025-11-27 16:22:30,268 | INFO     | mean x: 1764226592.6583564
[2025-11-27 11:23:11] 2025-11-27 16:22:30,268 | INFO     | mean y: 2927311.591874423
[2025-11-27 11:23:11] 2025-11-27 16:22:30,268 | INFO     | intersect: -9992224674.39306
[2025-11-27 11:23:11] 2025-11-27 16:22:30,270 | INFO     | chi2: 3.43089720871885
[2025-11-27 11:23:11] 2025-11-27 16:22:30,270 | INFO     | current chi2=3.43089720871885 (change=45.750414299599065 %)
[2025-11-27 11:23:11] 2025-11-27 16:22:30,306 | INFO     | sum of square deviations: 388435525617.27716
[2025-11-27 11:23:11] 2025-11-27 16:22:30,400 | INFO     | sum of deviations: 2396734341407.0547
[2025-11-27 11:23:11] 2025-11-27 16:22:30,400 | INFO     | mean x: 1764226440.1660483
[2025-11-27 11:23:11] 2025-11-27 16:22:30,400 | INFO     | mean y: 2931953.5807050094
[2025-11-27 11:23:11] 2025-11-27 16:22:30,400 | INFO     | intersect: -10882740999.336792
[2025-11-27 11:23:11] 2025-11-27 16:22:30,401 | INFO     | chi2: 2.685675048208185
[2025-11-27 11:23:11] 2025-11-27 16:22:30,401 | INFO     | current chi2=2.685675048208185 (change=21.720911912395728 %)
[2025-11-27 11:23:11] 2025-11-27 16:22:30,401 | INFO     | right removable region: 1077
[2025-11-27 11:23:11] 2025-11-27 16:22:30,405 | INFO     | sum of square deviations: 404874957127.12695
[2025-11-27 11:23:11] 2025-11-27 16:22:30,446 | INFO     | sum of deviations: 863329531563.3428
[2025-11-27 11:23:11] 2025-11-27 16:22:30,446 | INFO     | mean x: 1764227202.642269
[2025-11-27 11:23:11] 2025-11-27 16:22:30,446 | INFO     | mean y: 2903873.425434584
[2025-11-27 11:23:11] 2025-11-27 16:22:30,446 | INFO     | intersect: -3759021673.256907
[2025-11-27 11:23:11] 2025-11-27 16:22:30,451 | INFO     | chi2: 11.491599044980994
[2025-11-27 11:23:11] 2025-11-27 16:22:30,452 | INFO     | current chi2=11.491599044980994 (change=13.274907362450373 %)
[2025-11-27 11:23:11] 2025-11-27 16:22:30,452 | INFO     | left removable region: 10
[2025-11-27 11:23:11] 2025-11-27 16:22:30,453 | INFO     | sum of square deviations: 376664941457.1923
[2025-11-27 11:23:11] 2025-11-27 16:22:30,492 | INFO     | sum of deviations: 2074297580510.5
[2025-11-27 11:23:11] 2025-11-27 16:22:30,493 | INFO     | mean x: 1764226714.6719775
[2025-11-27 11:23:11] 2025-11-27 16:22:30,493 | INFO     | mean y: 2942544.5585754453
[2025-11-27 11:23:11] 2025-11-27 16:22:30,493 | INFO     | intersect: -9712671527.615366
[2025-11-27 11:23:11] 2025-11-27 16:22:30,499 | INFO     | chi2: 0.7062305537605231
[2025-11-27 11:23:11] 2025-11-27 16:22:30,499 | INFO     | current memory leak: 5.51 B/s (using 1067 data points, chi2=0.71)
[2025-11-27 11:23:11] 2025-11-27 16:22:30,500 | INFO     | could have reported an average CPU frequency of 3022 MHz (40 samples)
[2025-11-27 11:23:11] 2025-11-27 16:22:30,500 | INFO     | ..............................
[2025-11-27 11:23:11] 2025-11-27 16:22:30,500 | INFO     | . Timing measurements:
[2025-11-27 11:23:11] 2025-11-27 16:22:30,500 | INFO     | . get job = 0 s
[2025-11-27 11:23:11] 2025-11-27 16:22:30,500 | INFO     | . initial setup = 2 s
[2025-11-27 11:23:11] 2025-11-27 16:22:30,500 | INFO     | . payload setup = 5 s
[2025-11-27 11:23:11] 2025-11-27 16:22:30,501 | INFO     | . stage-in = 0 s
[2025-11-27 11:23:11] 2025-11-27 16:22:30,501 | INFO     | . payload execution = 66926 s
[2025-11-27 11:23:11] 2025-11-27 16:22:30,501 | INFO     | . stage-out = 5 s
[2025-11-27 11:23:11] 2025-11-27 16:22:30,501 | INFO     | . log creation = 1 s
[2025-11-27 11:23:11] 2025-11-27 16:22:30,501 | INFO     | ..............................
[2025-11-27 11:23:11] 2025-11-27 16:22:30,670 | INFO     | 
[2025-11-27 11:23:11] 2025-11-27 16:22:30,670 | INFO     | job summary report
[2025-11-27 11:23:11] 2025-11-27 16:22:30,670 | INFO     | --------------------------------------------------
[2025-11-27 11:23:11] 2025-11-27 16:22:30,670 | INFO     | PanDA job id: 6896990005
[2025-11-27 11:23:11] 2025-11-27 16:22:30,670 | INFO     | task id: 47556161
[2025-11-27 11:23:11] 2025-11-27 16:22:30,670 | INFO     | errors: (none)
[2025-11-27 11:23:11] 2025-11-27 16:22:30,670 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | pilot state: finished 
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | transexitcode: 0
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | exeerrorcode: 0
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | exeerrordiag: 
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | exitcode: 0
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | exitmsg: OK
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | cpuconsumptiontime: 227916 s
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | nevents: 1000
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | neventsw: 0
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | pid: 3365793
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | pgrp: 3365793
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | corecount: 8
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | event service: False
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | sizes: {0: 2284263, 4: 2284525, 11: 2284553, 66936: 2340470, 66942: 2349464, 66945: 2349520, 66971: 2349894}
[2025-11-27 11:23:11] 2025-11-27 16:22:30,671 | INFO     | --------------------------------------------------
[2025-11-27 11:23:11] 2025-11-27 16:22:30,672 | INFO     | 
[2025-11-27 11:23:11] 2025-11-27 16:22:30,672 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 11:23:11] 2025-11-27 16:22:30,807 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,807 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,807 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,807 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:23:11] 2025-11-27 16:22:30,808 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,809 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:23:11] 2025-11-27 16:22:30,809 | INFO     | job 6896990005 has completed (purged errors)
[2025-11-27 11:23:11] 2025-11-27 16:22:30,809 | INFO     | overall cleanup function is called
[2025-11-27 11:23:11] 2025-11-27 16:22:31,894 | INFO     | --- collectZombieJob: --- 10, [3365793]
[2025-11-27 11:23:11] 2025-11-27 16:22:31,895 | INFO     | zombie collector waiting for pid 3365793
[2025-11-27 11:23:11] 2025-11-27 16:22:31,895 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:23:11] 2025-11-27 16:22:31,895 | INFO     | collected zombie processes
[2025-11-27 11:23:11] 2025-11-27 16:22:31,896 | INFO     | will attempt to kill all subprocesses of pid=3365793
[2025-11-27 11:23:11] 2025-11-27 16:22:33,082 | INFO     | process IDs to be killed: [3365793] (in reverse order)
[2025-11-27 11:23:11] 2025-11-27 16:22:33,262 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:23:11] 2025-11-27 16:22:33,263 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:23:11] 2025-11-27 16:22:33,281 | INFO     | did not find any defunct processes belonging to 3365793
[2025-11-27 11:23:11] 2025-11-27 16:22:33,303 | INFO     | did not find any defunct processes belonging to 3365793
[2025-11-27 11:23:11] 2025-11-27 16:22:33,310 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:23:11] 2025-11-27 16:22:33,310 | INFO     | ready for new job
[2025-11-27 11:23:11] 2025-11-27 16:22:33,310 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:23:11] 2025-11-27 16:22:33,319 | INFO     | ***************************************
[2025-11-27 11:23:11] 2025-11-27 16:22:33,319 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:23:11] 2025-11-27 16:22:33,319 | INFO     | ***************************************
[2025-11-27 11:23:11] 2025-11-27 16:22:33,319 | INFO     | 
[2025-11-27 11:23:11] 2025-11-27 16:22:33,327 | INFO     | architecture information:
[2025-11-27 11:23:11] 2025-11-27 16:22:33,332 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:23:11] 2025-11-27 16:22:33,368 | INFO     | cat /etc/os-release:
[2025-11-27 11:23:11] NAME="CentOS Linux"
[2025-11-27 11:23:11] VERSION="7 (Core)"
[2025-11-27 11:23:11] ID="centos"
[2025-11-27 11:23:11] ID_LIKE="rhel fedora"
[2025-11-27 11:23:11] VERSION_ID="7"
[2025-11-27 11:23:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:23:11] ANSI_COLOR="0;31"
[2025-11-27 11:23:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:23:11] HOME_URL="https://www.centos.org/"
[2025-11-27 11:23:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:23:11] 
[2025-11-27 11:23:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:23:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:23:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:23:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:23:11] 
[2025-11-27 11:23:11] 2025-11-27 16:22:33,369 | INFO     | ***************************************
[2025-11-27 11:23:11] 2025-11-27 16:22:33,873 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 11:23:11] 2025-11-27 16:22:33,933 | INFO     | sufficient remaining disk space (67106766848 B)
[2025-11-27 11:23:11] 2025-11-27 16:22:33,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:23:11] 2025-11-27 16:22:33,935 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:23:11] 2025-11-27 16:22:33,935 | INFO     | update_server=False
[2025-11-27 11:23:11] 2025-11-27 16:22:33,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:23:11] 2025-11-27 16:22:33,936 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:23:11] 2025-11-27 16:22:33,937 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:23:11] 2025-11-27 16:22:33,937 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:23:11] 2025-11-27 16:22:33,937 | INFO     | aborting loop
[2025-11-27 11:23:11] 2025-11-27 16:22:34,007 | INFO     | all job control threads have been joined
[2025-11-27 11:23:11] 2025-11-27 16:22:34,348 | INFO     | all payload control threads have been joined
[2025-11-27 11:23:11] 2025-11-27 16:22:34,539 | INFO     | all data control threads have been joined
[2025-11-27 11:23:11] 2025-11-27 16:22:34,942 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:34,945 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:35,013 | INFO     | [job] control thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:35,353 | INFO     | [payload] control thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:35,381 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:35,493 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:35,545 | INFO     | [data] control thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:35,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:23:11] 2025-11-27 16:22:35,963 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:36,060 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:36,066 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:36,345 | INFO     | [job] validate thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:36,351 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:36,352 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:36,359 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:36,696 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:22:37,945 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:23:11] 2025-11-27 16:23:03,262 | INFO     | PID=3324637 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:23:11] 2025-11-27 16:23:03,262 | INFO     | .. there are 49 such processes running
[2025-11-27 11:23:11] 2025-11-27 16:23:03,262 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:23:11] 2025-11-27 16:23:03,262 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:23:11] 2025-11-27 16:23:03,262 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:23:11] 2025-11-27 16:23:03,566 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:23:11] 2025-11-27 16:23:03,991 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140302512785216)>', '<ExcThread(monitor, started 140301750499072)>']
[2025-11-27 11:23:11] 2025-11-27 16:23:04,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:23:11] 2025-11-27 16:23:04,269 | INFO     | [monitor] control thread has ended
[2025-11-27 11:23:11] 2025-11-27 16:23:09,018 | INFO     | all workflow threads have been joined
[2025-11-27 11:23:11] 2025-11-27 16:23:09,019 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:23:11] 2025-11-27 16:23:09,019 | INFO     | traces error code: 0
[2025-11-27 11:23:11] 2025-11-27 16:23:09,019 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:23:11] 2025-11-27 16:23:09,905 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:23:11] 2025-11-27 16:23:09,929 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:23:11] 2025-11-27 16:23:09,967 [wrapper] pilotpid: 3324637
[2025-11-27 11:23:11] 2025-11-27 16:23:10,004 [wrapper] Pilot exit status: 0
[2025-11-27 11:23:11] 2025-11-27 16:23:10,101 [wrapper] pandaids: 6896990005 6896990005
[2025-11-27 11:23:11] 2025-11-27 16:23:10,311 [wrapper] cleanup supervisor_pilot 4079762 3324638
[2025-11-27 11:23:11] 2025-11-27 16:23:10,315 [wrapper] Test setup, not cleaning
[2025-11-27 11:23:11] 2025-11-27 16:23:10,319 [wrapper] apfmon messages muted
[2025-11-27 11:23:11] 2025-11-27 16:23:10,332 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:23:11] 2025-11-27 16:23:10,350 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:23:11]  *** Error codes and diagnostics ***
[2025-11-27 11:23:11]     "exeErrorCode": 0,
[2025-11-27 11:23:11]     "exeErrorDiag": "",
[2025-11-27 11:23:11]     "pilotErrorCode": 0,
[2025-11-27 11:23:11]     "pilotErrorDiag": "",
[2025-11-27 11:23:11]  *** Listing of results directory ***
[2025-11-27 11:23:11] total 1712204
[2025-11-27 11:23:11] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 06:49 pilot3.tar.gz
[2025-11-27 11:23:11] -rwx------. 1 boincer umatlas     36292 Nov 25 07:44 runpilot2-wrapper.sh
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 07:44 queuedata.json
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas       100 Nov 26 06:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:23:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 06:30 run_atlas
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas       105 Nov 26 06:30 job.xml
[2025-11-27 11:23:11] -rw-r--r--. 3 boincer umatlas 410246882 Nov 26 06:30 EVNT.47483658._002166.pool.root.1
[2025-11-27 11:23:11] -rw-r--r--. 3 boincer umatlas 410246882 Nov 26 06:30 ATLAS.root_0
[2025-11-27 11:23:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 06:30 start_atlas.sh
[2025-11-27 11:23:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 06:30 shared
[2025-11-27 11:23:11] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 06:30 input.tar.gz
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas         0 Nov 26 06:30 boinc_lockfile
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 16:45 pandaJob.out
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas        57 Nov 26 16:45 setup.sh.local
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas    991538 Nov 26 16:46 agis_schedconf.cvmfs.json
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:51 boinc_task_state.xml
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas 907353675 Nov 27 11:20 HITS.47556161._001493.pool.root.1
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas      6877 Nov 27 11:21 init_data.xml
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas      1069 Nov 27 11:21 memory_monitor_summary.json
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:21 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas   2204792 Nov 27 11:22 log.47556161._001493.job.log.tgz.1
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas        96 Nov 27 11:22 pilot_heartbeat.json
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas      8631 Nov 27 11:22 heartbeat.json
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas      4824 Nov 27 11:23 pilotlog.txt
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:23 boinc_mmap_file
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:23 wrapper_checkpoint.txt
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas   8553584 Nov 27 11:23 log.47556161._001493.job.log.1
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas       353 Nov 27 11:23 output.list
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:23 runtime_log
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas  10782720 Nov 27 11:23 result.tar.gz
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas      9428 Nov 27 11:23 runtime_log.err
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas       789 Nov 27 11:23 qyANDmja7h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSTJKDmiOGhNn.diag
[2025-11-27 11:23:11] -rw-r--r--. 1 boincer umatlas     23394 Nov 27 11:23 stderr.txt
[2025-11-27 11:23:11] HITS file was successfully produced:
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas 907353675 Nov 27 11:20 shared/HITS.pool.root.1
[2025-11-27 11:23:11]  *** Contents of shared directory: ***
[2025-11-27 11:23:11] total 1297856
[2025-11-27 11:23:11] -rw-r--r--. 3 boincer umatlas 410246882 Nov 26 06:30 ATLAS.root_0
[2025-11-27 11:23:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 06:30 start_atlas.sh
[2025-11-27 11:23:11] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 06:30 input.tar.gz
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas 907353675 Nov 27 11:20 HITS.pool.root.1
[2025-11-27 11:23:11] -rw-------. 1 boincer umatlas  10782720 Nov 27 11:23 result.tar.gz
11:23:13 (3306070): run_atlas exited; CPU time 229974.996712
11:23:13 (3306070): called boinc_finish(0)

</stderr_txt>
]]>

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