Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:49:19 (11429): wrapper (7.7.26015): starting
10:49:19 (11429): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 10:49:19] Arguments: --nthreads 8
[2025-11-28 10:49:19] Threads: 8
[2025-11-28 10:49:19] Checking for CVMFS
[2025-11-28 10:49:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 10:49:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 10:49:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 10:49:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 10:49:22] 2.11.2.0 14339 288111 140440 153404 2 85 17270320 25165824 1318 130560 18 156425702 99.890 81767251 3671 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 10:49:22] CVMFS is ok
[2025-11-28 10:49:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 10:49:22] Checking for apptainer binary...
[2025-11-28 10:49:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 10:49:22] Running /usr/bin/apptainer --version
[2025-11-28 10:49:22] apptainer version 1.3.2-1.el7
[2025-11-28 10:49:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 10:49:30] cg-vwn496.simple-grid.lan
[2025-11-28 10:49:30] apptainer works
[2025-11-28 10:49:30] Set ATHENA_PROC_NUMBER=8
[2025-11-28 10:49:30] Set ATHENA_CORE_NUMBER=8
[2025-11-28 10:49:31] Starting ATLAS job with PandaID=6896988804
[2025-11-28 10:49:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 08:14:27]  *** The last 200 lines of the pilot log: ***
[2025-11-29 08:14:27] 2025-11-29 07:13:42,341 | INFO     | time since job start (76840s) is within the limit (172800.0s)
[2025-11-29 08:14:27] 2025-11-29 07:13:43,596 | INFO     | PID=15242 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 08:14:27] 2025-11-29 07:13:43,597 | INFO     | .. there are 9 such processes running
[2025-11-29 08:14:27] 2025-11-29 07:13:44,104 | INFO     | monitor loop #5226: job 0:6896988804 is in state 'finished'
[2025-11-29 08:14:27] 2025-11-29 07:13:44,104 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 08:14:27] 2025-11-29 07:13:44,598 | INFO     | time since job start (76842s) is within the limit (172800.0s)
[2025-11-29 08:14:27] 2025-11-29 07:13:46,605 | INFO     | time since job start (76844s) is within the limit (172800.0s)
[2025-11-29 08:14:27] 2025-11-29 07:13:46,611 | INFO     | monitor loop #5227: job 0:6896988804 is in state 'finished'
[2025-11-29 08:14:27] 2025-11-29 07:13:46,611 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 08:14:27] 2025-11-29 07:13:48,621 | INFO     | time since job start (76846s) is within the limit (172800.0s)
[2025-11-29 08:14:27] 2025-11-29 07:13:49,117 | INFO     | monitor loop #5228: job 0:6896988804 is in state 'finished'
[2025-11-29 08:14:27] 2025-11-29 07:13:49,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 08:14:27] 2025-11-29 07:13:50,148 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 08:14:27] 2025-11-29 07:13:50,149 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-29 08:14:27] 2025-11-29 07:13:50,151 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6896988804/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 08:14:27] 2025-11-29 07:13:50,151 | INFO     | extracted standard info from prmon json
[2025-11-29 08:14:27] 2025-11-29 07:13:50,152 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 08:14:27] 2025-11-29 07:13:50,152 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 08:14:27] 2025-11-29 07:13:50,178 | INFO     | fitting pss+swap vs Time
[2025-11-29 08:14:27] 2025-11-29 07:13:50,180 | INFO     | sum of square deviations: 605631192096.8008
[2025-11-29 08:14:27] 2025-11-29 07:13:50,230 | INFO     | sum of deviations: 2640710302602.6577
[2025-11-29 08:14:27] 2025-11-29 07:13:50,230 | INFO     | mean x: 1764362215.5544
[2025-11-29 08:14:27] 2025-11-29 07:13:50,230 | INFO     | mean y: 2846212.608
[2025-11-29 08:14:27] 2025-11-29 07:13:50,230 | INFO     | intersect: -7690234231.294663
[2025-11-29 08:14:27] 2025-11-29 07:13:50,232 | INFO     | chi2: 19.659230827808177
[2025-11-29 08:14:27] 2025-11-29 07:13:50,233 | INFO     | sum of square deviations: 598393049058.7192
[2025-11-29 08:14:27] 2025-11-29 07:13:50,284 | INFO     | sum of deviations: 3059341397269.833
[2025-11-29 08:14:27] 2025-11-29 07:13:50,285 | INFO     | mean x: 1764362063.0586345
[2025-11-29 08:14:27] 2025-11-29 07:13:50,285 | INFO     | mean y: 2855031.522891566
[2025-11-29 08:14:27] 2025-11-29 07:13:50,285 | INFO     | intersect: -9017613885.652002
[2025-11-29 08:14:27] 2025-11-29 07:13:50,286 | INFO     | chi2: 16.4260998740613
[2025-11-29 08:14:27] 2025-11-29 07:13:50,286 | INFO     | current chi2=16.4260998740613 (change=16.445866992789874 %)
[2025-11-29 08:14:27] 2025-11-29 07:13:50,287 | INFO     | right removable region: 1244
[2025-11-29 08:14:27] 2025-11-29 07:13:50,288 | INFO     | sum of square deviations: 598392245078.7196
[2025-11-29 08:14:27] 2025-11-29 07:13:50,341 | INFO     | sum of deviations: 2120561442575.6807
[2025-11-29 08:14:27] 2025-11-29 07:13:50,341 | INFO     | mean x: 1764362368.0586345
[2025-11-29 08:14:27] 2025-11-29 07:13:50,341 | INFO     | mean y: 2857169.8947791164
[2025-11-29 08:14:27] 2025-11-29 07:13:50,341 | INFO     | intersect: -6249628284.599152
[2025-11-29 08:14:27] 2025-11-29 07:13:50,343 | INFO     | chi2: 15.026167500235314
[2025-11-29 08:14:27] 2025-11-29 07:13:50,343 | INFO     | current chi2=15.026167500235314 (change=23.566859599712057 %)
[2025-11-29 08:14:27] 2025-11-29 07:13:50,343 | INFO     | left removable region: 10
[2025-11-29 08:14:27] 2025-11-29 07:13:50,344 | INFO     | sum of square deviations: 582671035346.783
[2025-11-29 08:14:27] 2025-11-29 07:13:50,389 | INFO     | sum of deviations: 2201110621548.0474
[2025-11-29 08:14:27] 2025-11-29 07:13:50,389 | INFO     | mean x: 1764362337.5680714
[2025-11-29 08:14:27] 2025-11-29 07:13:50,389 | INFO     | mean y: 2877746.666126418
[2025-11-29 08:14:27] 2025-11-29 07:13:50,389 | INFO     | intersect: -6662215326.252939
[2025-11-29 08:14:27] 2025-11-29 07:13:50,391 | INFO     | chi2: 7.541034715101994
[2025-11-29 08:14:27] 2025-11-29 07:13:50,391 | INFO     | current memory leak: 3.78 B/s (using 1234 data points, chi2=7.54)
[2025-11-29 08:14:27] 2025-11-29 07:13:50,392 | INFO     | could have reported an average CPU frequency of 2249 MHz (43 samples)
[2025-11-29 08:14:27] 2025-11-29 07:13:50,392 | INFO     | ..............................
[2025-11-29 08:14:27] 2025-11-29 07:13:50,393 | INFO     | . Timing measurements:
[2025-11-29 08:14:27] 2025-11-29 07:13:50,393 | INFO     | . get job = 0 s
[2025-11-29 08:14:27] 2025-11-29 07:13:50,393 | INFO     | . initial setup = 6 s
[2025-11-29 08:14:27] 2025-11-29 07:13:50,393 | INFO     | . payload setup = 154 s
[2025-11-29 08:14:27] 2025-11-29 07:13:50,393 | INFO     | . stage-in = 0 s
[2025-11-29 08:14:27] 2025-11-29 07:13:50,393 | INFO     | . payload execution = 76381 s
[2025-11-29 08:14:27] 2025-11-29 07:13:50,393 | INFO     | . stage-out = 3 s
[2025-11-29 08:14:27] 2025-11-29 07:13:50,393 | INFO     | . log creation = 0 s
[2025-11-29 08:14:27] 2025-11-29 07:13:50,393 | INFO     | ..............................
[2025-11-29 08:14:27] 2025-11-29 07:13:50,523 | INFO     | 
[2025-11-29 08:14:27] 2025-11-29 07:13:50,523 | INFO     | job summary report
[2025-11-29 08:14:27] 2025-11-29 07:13:50,523 | INFO     | --------------------------------------------------
[2025-11-29 08:14:27] 2025-11-29 07:13:50,523 | INFO     | PanDA job id: 6896988804
[2025-11-29 08:14:27] 2025-11-29 07:13:50,523 | INFO     | task id: 47556161
[2025-11-29 08:14:27] 2025-11-29 07:13:50,523 | INFO     | errors: (none)
[2025-11-29 08:14:27] 2025-11-29 07:13:50,523 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 08:14:27] 2025-11-29 07:13:50,523 | INFO     | pilot state: finished 
[2025-11-29 08:14:27] 2025-11-29 07:13:50,523 | INFO     | transexitcode: 0
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | exeerrorcode: 0
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | exeerrordiag: 
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | exitcode: 0
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | exitmsg: OK
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | cpuconsumptiontime: 286034 s
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | nevents: 1000
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | neventsw: 0
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | pid: 21781
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | pgrp: 21781
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | corecount: 8
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | event service: False
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | sizes: {0: 2283987, 1: 2284242, 12: 2284242, 23: 2284270, 34: 2284298, 44: 2284326, 55: 2284482, 66: 2284510, 76: 2284538, 87: 2284594, 98: 2284622, 100: 2285192, 
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | --------------------------------------------------
[2025-11-29 08:14:27] 2025-11-29 07:13:50,524 | INFO     | 
[2025-11-29 08:14:27] 2025-11-29 07:13:50,525 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-29 08:14:27] 2025-11-29 07:13:50,628 | INFO     | time since job start (76848s) is within the limit (172800.0s)
[2025-11-29 08:14:27] 2025-11-29 07:13:50,897 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,897 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,897 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,898 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,898 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,898 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,898 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,898 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,898 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,898 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,898 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,898 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,899 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,899 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,899 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,899 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,899 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,899 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 08:14:27] 2025-11-29 07:13:50,899 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,899 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 08:14:27] 2025-11-29 07:13:50,899 | INFO     | job 6896988804 has completed (purged errors)
[2025-11-29 08:14:27] 2025-11-29 07:13:50,900 | INFO     | overall cleanup function is called
[2025-11-29 08:14:27] 2025-11-29 07:13:51,915 | INFO     | --- collectZombieJob: --- 10, [21781]
[2025-11-29 08:14:27] 2025-11-29 07:13:51,915 | INFO     | zombie collector waiting for pid 21781
[2025-11-29 08:14:27] 2025-11-29 07:13:51,915 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 08:14:27] 2025-11-29 07:13:51,915 | INFO     | collected zombie processes
[2025-11-29 08:14:27] 2025-11-29 07:13:51,915 | INFO     | will attempt to kill all subprocesses of pid=21781
[2025-11-29 08:14:27] 2025-11-29 07:13:52,044 | INFO     | process IDs to be killed: [21781] (in reverse order)
[2025-11-29 08:14:27] 2025-11-29 07:13:52,960 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 08:14:27] 2025-11-29 07:13:52,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 08:14:27] 2025-11-29 07:13:52,963 | INFO     | did not find any defunct processes belonging to 21781
[2025-11-29 08:14:27] 2025-11-29 07:13:52,965 | INFO     | did not find any defunct processes belonging to 21781
[2025-11-29 08:14:27] 2025-11-29 07:13:53,010 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 08:14:27] 2025-11-29 07:13:53,010 | INFO     | ready for new job
[2025-11-29 08:14:27] 2025-11-29 07:13:53,010 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 08:14:27] 2025-11-29 07:13:53,015 | INFO     | ***************************************
[2025-11-29 08:14:27] 2025-11-29 07:13:53,015 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 08:14:27] 2025-11-29 07:13:53,015 | INFO     | ***************************************
[2025-11-29 08:14:27] 2025-11-29 07:13:53,015 | INFO     | 
[2025-11-29 08:14:27] 2025-11-29 07:13:53,016 | INFO     | pilot is running in a VM
[2025-11-29 08:14:27] 2025-11-29 07:13:53,016 | INFO     | architecture information:
[2025-11-29 08:14:27] 2025-11-29 07:13:53,022 | INFO     | executing command: cat /etc/os-release
[2025-11-29 08:14:27] 2025-11-29 07:13:53,185 | INFO     | cat /etc/os-release:
[2025-11-29 08:14:27] NAME="CentOS Linux"
[2025-11-29 08:14:27] VERSION="7 (Core)"
[2025-11-29 08:14:27] ID="centos"
[2025-11-29 08:14:27] ID_LIKE="rhel fedora"
[2025-11-29 08:14:27] VERSION_ID="7"
[2025-11-29 08:14:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 08:14:27] ANSI_COLOR="0;31"
[2025-11-29 08:14:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 08:14:27] HOME_URL="https://www.centos.org/"
[2025-11-29 08:14:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 08:14:27] 
[2025-11-29 08:14:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 08:14:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 08:14:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 08:14:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 08:14:27] 
[2025-11-29 08:14:27] 2025-11-29 07:13:53,185 | INFO     | ***************************************
[2025-11-29 08:14:27] 2025-11-29 07:13:53,689 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-29 08:14:27] 2025-11-29 07:13:53,874 | INFO     | sufficient remaining disk space (489043263488 B)
[2025-11-29 08:14:27] 2025-11-29 07:13:53,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 08:14:27] 2025-11-29 07:13:53,875 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 08:14:27] 2025-11-29 07:13:53,875 | INFO     | update_server=False
[2025-11-29 08:14:27] 2025-11-29 07:13:53,875 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 08:14:27] 2025-11-29 07:13:53,917 | INFO     | all data control threads have been joined
[2025-11-29 08:14:27] 2025-11-29 07:13:53,974 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 08:14:27] 2025-11-29 07:13:54,132 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-29 08:14:27] 2025-11-29 07:13:54,132 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-29 08:14:27] 2025-11-29 07:13:54,132 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 08:14:27] 2025-11-29 07:13:54,132 | INFO     | will abort loop
[2025-11-29 08:14:27] 2025-11-29 07:13:54,593 | INFO     | all job control threads have been joined
[2025-11-29 08:14:27] 2025-11-29 07:13:54,729 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 08:14:27] 2025-11-29 07:13:54,881 | INFO     | [job] retrieve thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:54,904 | INFO     | [payload] validate_post thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:54,923 | INFO     | [data] control thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:55,063 | INFO     | [job] validate thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:55,115 | INFO     | all payload control threads have been joined
[2025-11-29 08:14:27] 2025-11-29 07:13:55,138 | INFO     | [job] job monitor thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:55,336 | INFO     | [data] copytool_in thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:55,365 | INFO     | [payload] failed_post thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:55,471 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:55,501 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:55,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 08:14:27] 2025-11-29 07:13:55,599 | INFO     | [job] control thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:55,767 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:56,121 | INFO     | [payload] control thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:56,548 | INFO     | [job] queue monitor thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:56,736 | INFO     | [data] copytool_out thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:13:57,984 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:14:04,680 | INFO     | job.realtimelogging is not enabled
[2025-11-29 08:14:27] 2025-11-29 07:14:05,686 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 08:14:27] 2025-11-29 07:14:16,268 | INFO     | [monitor] cgroup control has ended
[2025-11-29 08:14:27] 2025-11-29 07:14:16,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140251420981056)>', '<ExcThread(monitor, started 140250982627072)>']
[2025-11-29 08:14:27] 2025-11-29 07:14:21,311 | INFO     | all workflow threads have been joined
[2025-11-29 08:14:27] 2025-11-29 07:14:21,311 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 08:14:27] 2025-11-29 07:14:21,311 | INFO     | traces error code: 0
[2025-11-29 08:14:27] 2025-11-29 07:14:21,311 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 08:14:27] 2025-11-29 07:14:23,803 | INFO     | PID=15242 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 08:14:27] 2025-11-29 07:14:23,803 | INFO     | .. there are 9 such processes running
[2025-11-29 08:14:27] 2025-11-29 07:14:23,803 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 08:14:27] 2025-11-29 07:14:23,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 08:14:27] 2025-11-29 07:14:23,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 08:14:27] 2025-11-29 07:14:23,804 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 08:14:27] 2025-11-29 07:14:23,804 | INFO     | [monitor] control thread has ended
[2025-11-29 08:14:27] 2025-11-29 07:14:24,117 [wrapper] ==== pilot stdout END ====
[2025-11-29 08:14:27] 2025-11-29 07:14:24,165 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 08:14:27] 2025-11-29 07:14:24,214 [wrapper] pilotpid: 15242
[2025-11-29 08:14:27] 2025-11-29 07:14:24,263 [wrapper] Pilot exit status: 0
[2025-11-29 08:14:27] 2025-11-29 07:14:24,575 [wrapper] pandaids: 6896988804
[2025-11-29 08:14:27] 2025-11-29 07:14:25,311 [wrapper] cleanup supervisor_pilot 20630 15243
[2025-11-29 08:14:27] 2025-11-29 07:14:25,357 [wrapper] Test setup, not cleaning
[2025-11-29 08:14:27] 2025-11-29 07:14:25,432 [wrapper] apfmon messages muted
[2025-11-29 08:14:27] 2025-11-29 07:14:25,488 [wrapper] ==== wrapper stdout END ====
[2025-11-29 08:14:27] 2025-11-29 07:14:25,533 [wrapper] ==== wrapper stderr END ====
[2025-11-29 08:14:27]  *** Error codes and diagnostics ***
[2025-11-29 08:14:27]     "exeErrorCode": 0,
[2025-11-29 08:14:27]     "exeErrorDiag": "",
[2025-11-29 08:14:27]     "pilotErrorCode": 0,
[2025-11-29 08:14:27]     "pilotErrorDiag": "",
[2025-11-29 08:14:27]  *** Listing of results directory ***
[2025-11-29 08:14:27] total 1328332
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc    576529 Nov 25 11:51 pilot3.tar.gz
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc      5112 Nov 25 12:38 queuedata.json
[2025-11-29 08:14:27] -rwx------. 1 boinc boinc     36292 Nov 25 12:39 runpilot2-wrapper.sh
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc       100 Nov 28 10:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 08:14:27] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 10:49 run_atlas
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc       105 Nov 28 10:49 job.xml
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc      6393 Nov 28 10:49 init_data.xml
[2025-11-29 08:14:27] -rw-r--r--. 2 boinc boinc 410387110 Nov 28 10:49 EVNT.47483658._002152.pool.root.1
[2025-11-29 08:14:27] -rw-r--r--. 2 boinc boinc     15847 Nov 28 10:49 start_atlas.sh
[2025-11-29 08:14:27] drwxrwx--x. 2 boinc boinc        68 Nov 28 10:49 shared
[2025-11-29 08:14:27] -rw-r--r--. 2 boinc boinc    590106 Nov 28 10:49 input.tar.gz
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc         0 Nov 28 10:49 boinc_lockfile
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc      2784 Nov 28 10:49 pandaJob.out
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc    991864 Nov 28 10:52 agis_schedconf.cvmfs.json
[2025-11-29 08:14:27] drwx------. 5 boinc boinc      4096 Nov 28 10:53 pilot3
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc       533 Nov 29 07:54 boinc_task_state.xml
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc 920581521 Nov 29 08:10 HITS.47556161._001358.pool.root.1
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc      1032 Nov 29 08:12 memory_monitor_summary.json
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc   1516240 Nov 29 08:12 agis_ddmendpoints.agis.ALL.json
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc   2377052 Nov 29 08:12 log.47556161._001358.job.log.tgz.1
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc        95 Nov 29 08:13 pilot_heartbeat.json
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc      7947 Nov 29 08:13 heartbeat.json
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc      8192 Nov 29 08:14 boinc_mmap_file
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc        29 Nov 29 08:14 wrapper_checkpoint.txt
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc       820 Nov 29 08:14 pilotlog.txt
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc  10294685 Nov 29 08:14 log.47556161._001358.job.log.1
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc       353 Nov 29 08:14 output.list
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc       620 Nov 29 08:14 runtime_log
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc  12687360 Nov 29 08:14 result.tar.gz
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc      8833 Nov 29 08:14 runtime_log.err
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc       662 Nov 29 08:14 6ATNDmiZ6h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPSJKDmbf7wzn.diag
[2025-11-29 08:14:27] -rw-r--r--. 1 boinc boinc     21441 Nov 29 08:14 stderr.txt
[2025-11-29 08:14:27] HITS file was successfully produced:
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc 920581521 Nov 29 08:10 shared/HITS.pool.root.1
[2025-11-29 08:14:27]  *** Contents of shared directory: ***
[2025-11-29 08:14:27] total 1312768
[2025-11-29 08:14:27] -rw-r--r--. 2 boinc boinc 410387110 Nov 28 10:49 ATLAS.root_0
[2025-11-29 08:14:27] -rw-r--r--. 2 boinc boinc     15847 Nov 28 10:49 start_atlas.sh
[2025-11-29 08:14:27] -rw-r--r--. 2 boinc boinc    590106 Nov 28 10:49 input.tar.gz
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc 920581521 Nov 29 08:10 HITS.pool.root.1
[2025-11-29 08:14:27] -rw-------. 1 boinc boinc  12687360 Nov 29 08:14 result.tar.gz
08:14:29 (11429): run_atlas exited; CPU time 286481.944781
08:14:29 (11429): called boinc_finish(0)

</stderr_txt>
]]>

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