Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 10:50:02 (20784): vboxwrapper version 26210
2025-11-26 10:50:02 (20784): BOINC client version: 8.0.2
2025-11-26 10:50:03 (20784): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2025-11-26 10:50:03 (20784): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 10:50:03 (20784): Create VM. (boinc_72e483080c41c2c1, slot#0)
2025-11-26 10:50:04 (20784): Setting Memory Size for VM. (6200MB)
2025-11-26 10:50:04 (20784): Setting CPU Count for VM. (4)
2025-11-26 10:50:04 (20784): Setting Chipset Options for VM.
2025-11-26 10:50:05 (20784): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 10:50:05 (20784): Setting Boot Options for VM.
2025-11-26 10:50:05 (20784): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 10:50:06 (20784): Enabling VM Network Access.
2025-11-26 10:50:06 (20784): Disabling USB Support for VM.
2025-11-26 10:50:06 (20784): Disabling COM Port Support for VM.
2025-11-26 10:50:06 (20784): Disabling LPT Port Support for VM.
2025-11-26 10:50:07 (20784): Disabling Audio Support for VM.
2025-11-26 10:50:07 (20784): Disabling Clipboard Support for VM.
2025-11-26 10:50:07 (20784): Disabling Drag and Drop Support for VM.
2025-11-26 10:50:07 (20784): Adding storage controller(s) to VM.
2025-11-26 10:50:08 (20784): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 10:50:08 (20784): Adding VirtualBox Guest Additions to VM.
2025-11-26 10:50:08 (20784): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 10:50:09 (20784): forwarding host port 50462 to guest port 80
2025-11-26 10:50:09 (20784): Enabling remote desktop for VM.
2025-11-26 10:50:09 (20784): Enabling shared directory for VM.
2025-11-26 10:50:10 (20784): Starting VM using VBoxManage interface. (boinc_72e483080c41c2c1, slot#0)
2025-11-26 10:50:15 (20784): Successfully started VM. (PID = '26400')
2025-11-26 10:50:15 (20784): Reporting VM Process ID to BOINC.
2025-11-26 10:50:15 (20784): Guest Log: BIOS: VirtualBox 7.0.12
2025-11-26 10:50:15 (20784): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 10:50:15 (20784): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 10:50:15 (20784): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 10:50:15 (20784): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 10:50:15 (20784): Detected: Web Application Enabled (http://localhost:50462)
2025-11-26 10:50:15 (20784): Detected: Remote Desktop Enabled (localhost:50464)
2025-11-26 10:50:15 (20784): Preference change detected
2025-11-26 10:50:15 (20784): Setting CPU throttle for VM. (100%)
2025-11-26 10:50:16 (20784): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 10:50:17 (20784): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 10:50:17 (20784): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 10:50:19 (20784): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 10:50:19 (20784): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 10:50:19 (20784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 10:50:24 (20784): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 10:50:24 (20784): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 10:50:28 (20784): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 10:50:28 (20784): Guest Log: 00:00:00.000100 main     Log opened 2025-11-26T10:50:25.986963000Z
2025-11-26 10:50:28 (20784): Guest Log: 00:00:00.000165 main     OS Product: Linux
2025-11-26 10:50:28 (20784): Guest Log: 00:00:00.000190 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 10:50:28 (20784): Guest Log: 00:00:00.000211 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 10:50:28 (20784): Guest Log: 00:00:00.000230 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 10:50:28 (20784): Guest Log: 00:00:00.000231 main     Process ID: 1359
2025-11-26 10:50:28 (20784): Guest Log: 00:00:00.000231 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 10:50:28 (20784): Guest Log: 00:00:00.000861 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 10:50:28 (20784): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 10:50:28 (20784): Guest Log: [INFO] Mounting shared directory
2025-11-26 10:50:28 (20784): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 10:50:30 (20784): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 10:50:30 (20784): Guest Log: [INFO] Detected branch: prod
2025-11-26 10:50:30 (20784): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 10:50:30 (20784): Guest Log: Copying input files
2025-11-26 10:50:31 (20784): Guest Log: Copied input files into RunAtlas.
2025-11-26 10:50:31 (20784): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-11-26 10:50:38 (20784): Guest Log: 00:00:10.008497 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 993 919 000ns (GuestNow=1 764 150 637 995 206 000 ns GuestLast=1 764 154 225 989 125 000 ns fSetTimeLastLoop=true )
2025-11-26 10:50:43 (20784): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 10:50:43 (20784): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 10:50:43 (20784): Guest Log: 2.6.3.0 1635 0 29612 153316 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-11-26 10:50:44 (20784): Guest Log: copied the webapp to /var/www
2025-11-26 10:50:44 (20784): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-26 10:50:44 (20784): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-26 10:50:44 (20784): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 10:50:44 (20784): Guest Log:  *** Starting ATLAS job. (PandaID=6894239197 taskID=47523939) ***
2025-11-26 11:12:18 (20784): Preference change detected
2025-11-26 11:12:18 (20784): Setting CPU throttle for VM. (100%)
2025-11-26 11:12:19 (20784): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 11:18:45 (20784): Preference change detected
2025-11-26 11:18:45 (20784): Setting CPU throttle for VM. (100%)
2025-11-26 11:18:45 (20784): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 12:30:20 (20784): Status Report: Elapsed Time: '6000.000000'
2025-11-26 12:30:20 (20784): Status Report: CPU Time: '22276.562500'
2025-11-26 14:04:46 (20784): Guest Log:  *** Job finished ***
2025-11-26 14:04:46 (20784): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:22,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:22,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:36,984 | INFO     | [monitor] cgroup control has ended
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:37,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672056530752)>', '<ExcThread(monitor, started 139671220758272)>']
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:37,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:37,938 | INFO     | [monitor] control thread has ended
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,825 | INFO     | all workflow threads have been joined
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,825 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,825 | INFO     | traces error code: 0
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,869 [wrapper] ==== pilot stdout END ====
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,871 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,874 [wrapper] pilotpid: 6036
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,877 [wrapper] Pilot exit status: 0
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,925 [wrapper] pandaids: 6894239197
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,945 [wrapper] cleanup supervisor_pilot 10358 6037
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,952 [wrapper] Test setup, not cleaning
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,955 [wrapper] apfmon messages muted
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,958 [wrapper] ==== wrapper stdout END ====
2025-11-26 14:04:46 (20784): Guest Log: 2025-11-26 13:04:42,960 [wrapper] ==== wrapper stderr END ====
2025-11-26 14:04:46 (20784): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 14:04:46 (20784): Guest Log:     "exeErrorCode": 0,
2025-11-26 14:04:46 (20784): Guest Log:     "exeErrorDiag": "",
2025-11-26 14:04:46 (20784): Guest Log:     "pilotErrorCode": 0,
2025-11-26 14:04:46 (20784): Guest Log:     "pilotErrorDiag": "",
2025-11-26 14:04:46 (20784): Guest Log:  *** Listing of results directory ***
2025-11-26 14:04:46 (20784): Guest Log: total 333800
2025-11-26 14:04:46 (20784): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 25 10:51 pilot3.tar.gz
2025-11-26 14:04:46 (20784): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 25 11:31 queuedata.json
2025-11-26 14:04:46 (20784): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 25 11:34 runpilot2-wrapper.sh
2025-11-26 14:04:46 (20784): Guest Log: -rwxr-xr-x. 1 atlas atlas      9331 Nov 26 09:50 init_data.xml
2025-11-26 14:04:46 (20784): Guest Log: -rwxr-xr-x. 1 atlas atlas    589950 Nov 26 09:50 input.tar.gz
2025-11-26 14:04:46 (20784): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 09:50 start_atlas.sh
2025-11-26 14:04:46 (20784): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 09:50 EVNT.47523935._000003.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 14:04:46 (20784): Guest Log: -rw-r--r--. 1 atlas atlas      2610 Nov 26 09:50 pandaJob.out
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas        49 Nov 26 09:50 setup.sh.local
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas    991827 Nov 26 09:51 agis_schedconf.cvmfs.json
2025-11-26 14:04:46 (20784): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 09:51 pilot3
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas 334113439 Nov 26 13:03 HITS.47523939._000071.pool.root.1
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas        95 Nov 26 13:03 pilot_heartbeat.json
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas      1035 Nov 26 13:03 memory_monitor_summary.json
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 13:03 agis_ddmendpoints.agis.ALL.json
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas    366241 Nov 26 13:03 log.47523939._000071.job.log.tgz.1
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas      7821 Nov 26 13:03 heartbeat.json
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas      5063 Nov 26 13:04 pilotlog.txt
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas   1556541 Nov 26 13:04 log.47523939._000071.job.log.1
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas       357 Nov 26 13:04 output.list
2025-11-26 14:04:46 (20784): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 13:04 runtime_log
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas   1945600 Nov 26 13:04 result.tar.gz
2025-11-26 14:04:46 (20784): Guest Log: -rw-r--r--. 1 atlas atlas      9210 Nov 26 13:04 runtime_log.err
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas       651 Nov 26 13:04 K94MDmaU6h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxLMKDmBtWMhm.diag
2025-11-26 14:04:46 (20784): Guest Log: Looking for outputfile HITS.47523939._000071.pool.root.1
2025-11-26 14:04:46 (20784): Guest Log: HITS file was successfully produced
2025-11-26 14:04:46 (20784): Guest Log: -rw-------. 1 atlas atlas 334113439 Nov 26 13:03 /home/atlas/RunAtlas/HITS.47523939._000071.pool.root.1
2025-11-26 14:04:47 (20784): Guest Log: Successfully finished the ATLAS job!
2025-11-26 14:04:47 (20784): Guest Log: Copying the results back to the shared directory!
2025-11-26 14:04:47 (20784): Guest Log:  *** Contents of shared directory: ***
2025-11-26 14:04:47 (20784): Guest Log: total 616126
2025-11-26 14:04:47 (20784): Guest Log: -rwxrwxrwx. 1 root root 294235217 Nov 26 09:50 ATLAS.root_0
2025-11-26 14:04:47 (20784): Guest Log: -rwxrwxrwx. 1 root root 334113439 Nov 26 13:04 HITS.pool.root.1
2025-11-26 14:04:47 (20784): Guest Log: -rwxrwxrwx. 1 root root      9331 Nov 26 09:50 init_data.xml
2025-11-26 14:04:47 (20784): Guest Log: -rwxrwxrwx. 1 root root    589950 Nov 26 09:49 input.tar.gz
2025-11-26 14:04:47 (20784): Guest Log: -rwxrwxrwx. 1 root root   1945600 Nov 26 13:04 result.tar.gz
2025-11-26 14:04:47 (20784): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 09:49 start_atlas.sh
2025-11-26 14:04:47 (20784): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 14:04:47 (20784): VM Completion File Detected.
2025-11-26 14:04:47 (20784): Powering off VM.
2025-11-26 14:04:47 (20784): Successfully stopped VM.
2025-11-26 14:04:47 (20784): Deregistering VM. (boinc_72e483080c41c2c1, slot#0)
2025-11-26 14:04:47 (20784): Removing network bandwidth throttle group from VM.
2025-11-26 14:04:48 (20784): Removing VM from VirtualBox.
2025-11-26 14:04:53 (20784): called boinc_finish(0)

</stderr_txt>
]]>

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