Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:05:19 (3916464): wrapper (7.7.26015): starting
15:05:19 (3916464): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 15:05:19] Arguments: --nthreads 3
[2025-11-26 15:05:19] Threads: 3
[2025-11-26 15:05:19] Checking for CVMFS
[2025-11-26 15:05:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:05:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:05:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:05:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:05:19] 2.9.2.0 2184780 875 72092 153323 1 128 35661724 36864001 0 130560 0 5145354 99.999 29034 28270 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 15:05:19] CVMFS is ok
[2025-11-26 15:05:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:05:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:05:19] Further information can be found at the LHC@home message board.
[2025-11-26 15:05:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:05:19] Checking for apptainer binary...
[2025-11-26 15:05:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:05:19] Running /usr/bin/apptainer --version
[2025-11-26 15:05:19] apptainer version 1.4.1-1.1
[2025-11-26 15:05:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:05:19] thA335
[2025-11-26 15:05:19] apptainer works
[2025-11-26 15:05:19] Set ATHENA_PROC_NUMBER=3
[2025-11-26 15:05:19] Set ATHENA_CORE_NUMBER=3
[2025-11-26 15:05:20] Starting ATLAS job with PandaID=6896923353
[2025-11-26 15:05:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:09:38]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:09:38] 2025-11-26 14:08:45,993 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:09:38] 2025-11-26 14:08:46,002 | INFO     | cat /etc/os-release:
[2025-11-26 15:09:38] NAME="CentOS Linux"
[2025-11-26 15:09:38] VERSION="7 (Core)"
[2025-11-26 15:09:38] ID="centos"
[2025-11-26 15:09:38] ID_LIKE="rhel fedora"
[2025-11-26 15:09:38] VERSION_ID="7"
[2025-11-26 15:09:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:09:38] ANSI_COLOR="0;31"
[2025-11-26 15:09:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:09:38] HOME_URL="https://www.centos.org/"
[2025-11-26 15:09:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:09:38] 
[2025-11-26 15:09:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:09:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:09:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:09:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:09:38] 
[2025-11-26 15:09:38] 2025-11-26 14:08:46,002 | INFO     | ***************************************
[2025-11-26 15:09:38] 2025-11-26 14:08:46,506 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 15:09:38] 2025-11-26 14:08:46,519 | INFO     | sufficient remaining disk space (826356531200 B)
[2025-11-26 15:09:38] 2025-11-26 14:08:46,519 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:09:38] 2025-11-26 14:08:46,519 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:09:38] 2025-11-26 14:08:46,519 | INFO     | update_server=False
[2025-11-26 15:09:38] 2025-11-26 14:08:46,519 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:09:38] 2025-11-26 14:08:46,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:09:38] 2025-11-26 14:08:46,519 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:09:38] 2025-11-26 14:08:46,519 | INFO     | aborting loop
[2025-11-26 15:09:38] 2025-11-26 14:08:46,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:09:38] 2025-11-26 14:08:46,765 | INFO     | all job control threads have been joined
[2025-11-26 15:09:38] 2025-11-26 14:08:47,525 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:47,526 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:47,527 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:47,561 | INFO     | all data control threads have been joined
[2025-11-26 15:09:38] 2025-11-26 14:08:47,771 | INFO     | [job] control thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:47,930 | INFO     | all payload control threads have been joined
[2025-11-26 15:09:38] 2025-11-26 14:08:48,000 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:48,224 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:48,349 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:48,511 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:48,568 | INFO     | [data] control thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:48,765 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:48,823 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:48,891 | INFO     | [job] validate thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:48,936 | INFO     | [payload] control thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:48,969 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:49,023 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:08:49,563 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:09:38] 2025-11-26 14:08:53,570 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:09:38] 2025-11-26 14:09:17,052 | INFO     | PID=3920195 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:09:38] 2025-11-26 14:09:17,052 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:09:38] 2025-11-26 14:09:17,052 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:09:38] 2025-11-26 14:09:17,052 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:09:38] 2025-11-26 14:09:32,132 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:09:38] 2025-11-26 14:09:33,339 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140348367697728)>', '<ExcThread(monitor, started 140347501958912)>']
[2025-11-26 15:09:38] 2025-11-26 14:09:34,143 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:09:38] 2025-11-26 14:09:34,143 | INFO     | [monitor] control thread has ended
[2025-11-26 15:09:38] 2025-11-26 14:09:38,365 | INFO     | all workflow threads have been joined
[2025-11-26 15:09:38] 2025-11-26 14:09:38,366 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:09:38] 2025-11-26 14:09:38,366 | INFO     | traces error code: 0
[2025-11-26 15:09:38] 2025-11-26 14:09:38,367 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:09:38] 2025-11-26 14:09:38,412 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:09:38] 2025-11-26 14:09:38,415 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:09:38] 2025-11-26 14:09:38,418 [wrapper] pilotpid: 3920195
[2025-11-26 15:09:38] 2025-11-26 14:09:38,421 [wrapper] Pilot exit status: 0
[2025-11-26 15:09:38] 2025-11-26 14:09:38,429 [wrapper] pandaids: 6896923353
[2025-11-26 15:09:38] 2025-11-26 14:09:38,445 [wrapper] cleanup supervisor_pilot 3920201 3920196
[2025-11-26 15:09:38] 2025-11-26 14:09:38,448 [wrapper] Test setup, not cleaning
[2025-11-26 15:09:38] 2025-11-26 14:09:38,450 [wrapper] apfmon messages muted
[2025-11-26 15:09:38] 2025-11-26 14:09:38,453 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:09:38] 2025-11-26 14:09:38,455 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:09:38]  *** Error codes and diagnostics ***
[2025-11-26 15:09:38]     "exeErrorCode": 65,
[2025-11-26 15:09:38]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 15:09:38]     "pilotErrorCode": 1305,
[2025-11-26 15:09:38]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 15:09:38]  *** Listing of results directory ***
[2025-11-26 15:09:38] total 404288
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc    576529 Nov 25 11:51 pilot3.tar.gz
[2025-11-26 15:09:38] -rwx------ 1 boinc boinc     36292 Nov 25 12:36 runpilot2-wrapper.sh
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc      5112 Nov 25 12:36 queuedata.json
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc       100 Nov 26 15:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:09:38] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 15:05 run_atlas
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc       105 Nov 26 15:05 job.xml
[2025-11-26 15:09:38] -rw-r--r-- 2 boinc boinc 409800652 Nov 26 15:05 EVNT.47483658._002150.pool.root.1
[2025-11-26 15:09:38] -rw-r--r-- 2 boinc boinc    590098 Nov 26 15:05 input.tar.gz
[2025-11-26 15:09:38] -rw-r--r-- 2 boinc boinc     15847 Nov 26 15:05 start_atlas.sh
[2025-11-26 15:09:38] drwxrwx--x 2 boinc boinc      4096 Nov 26 15:05 shared
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc         0 Nov 26 15:05 boinc_setup_complete
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc      6196 Nov 26 15:05 init_data.xml
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc         0 Nov 26 15:05 boinc_lockfile
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc      2781 Nov 26 15:05 pandaJob.out
[2025-11-26 15:09:38] -rw------- 1 boinc boinc    991830 Nov 26 15:05 agis_schedconf.cvmfs.json
[2025-11-26 15:09:38] -rw------- 1 boinc boinc   1516240 Nov 26 15:05 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:09:38] drwx------ 5 boinc boinc      4096 Nov 26 15:05 pilot3
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc       522 Nov 26 15:06 boinc_task_state.xml
[2025-11-26 15:09:38] -rw------- 1 boinc boinc       985 Nov 26 15:06 memory_monitor_summary.json
[2025-11-26 15:09:38] -rw------- 1 boinc boinc     54278 Nov 26 15:06 log.47556161._001331.job.log.tgz.1
[2025-11-26 15:09:38] -rw------- 1 boinc boinc        95 Nov 26 15:08 pilot_heartbeat.json
[2025-11-26 15:09:38] -rw------- 1 boinc boinc      8382 Nov 26 15:08 heartbeat.json
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc      8192 Nov 26 15:09 boinc_mmap_file
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc        22 Nov 26 15:09 wrapper_checkpoint.txt
[2025-11-26 15:09:38] -rw------- 1 boinc boinc      4752 Nov 26 15:09 pilotlog.txt
[2025-11-26 15:09:38] -rw------- 1 boinc boinc     91986 Nov 26 15:09 log.47556161._001331.job.log.1
[2025-11-26 15:09:38] -rw------- 1 boinc boinc       186 Nov 26 15:09 output.list
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc       620 Nov 26 15:09 runtime_log
[2025-11-26 15:09:38] -rw------- 1 boinc boinc    163840 Nov 26 15:09 result.tar.gz
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc      8744 Nov 26 15:09 runtime_log.err
[2025-11-26 15:09:38] -rw------- 1 boinc boinc       649 Nov 26 15:09 azgKDmUW6h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0LMKDmk9B4en.diag
[2025-11-26 15:09:38] -rw-r--r-- 1 boinc boinc      9261 Nov 26 15:09 stderr.txt
[2025-11-26 15:09:38] No HITS result produced
[2025-11-26 15:09:38]  *** Contents of shared directory: ***
[2025-11-26 15:09:38] total 400956
[2025-11-26 15:09:38] -rw-r--r-- 2 boinc boinc 409800652 Nov 26 15:05 ATLAS.root_0
[2025-11-26 15:09:38] -rw-r--r-- 2 boinc boinc    590098 Nov 26 15:05 input.tar.gz
[2025-11-26 15:09:38] -rw-r--r-- 2 boinc boinc     15847 Nov 26 15:05 start_atlas.sh
[2025-11-26 15:09:38] -rw------- 1 boinc boinc    163840 Nov 26 15:09 result.tar.gz
15:09:40 (3916464): run_atlas exited; CPU time 31.212697
15:09:40 (3916464): called boinc_finish(0)

</stderr_txt>
]]>

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