Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 10:38:47 (14924): vboxwrapper version 26210
2025-11-26 10:38:47 (14924): BOINC client version: 8.0.2
2025-11-26 10:38:47 (14924): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-26 10:38:47 (14924): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 10:38:48 (14924): Create VM. (boinc_c5cba08db3c9c171, slot#5)
2025-11-26 10:38:48 (14924): Setting Memory Size for VM. (4700MB)
2025-11-26 10:38:48 (14924): Setting CPU Count for VM. (7)
2025-11-26 10:38:49 (14924): Setting Chipset Options for VM.
2025-11-26 10:38:49 (14924): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 10:38:49 (14924): Setting Boot Options for VM.
2025-11-26 10:38:50 (14924): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 10:38:50 (14924): Enabling VM Network Access.
2025-11-26 10:38:50 (14924): Disabling USB Support for VM.
2025-11-26 10:38:51 (14924): Disabling COM Port Support for VM.
2025-11-26 10:38:51 (14924): Disabling LPT Port Support for VM.
2025-11-26 10:38:51 (14924): Disabling Audio Support for VM.
2025-11-26 10:38:51 (14924): Disabling Clipboard Support for VM.
2025-11-26 10:38:52 (14924): Disabling Drag and Drop Support for VM.
2025-11-26 10:38:52 (14924): Adding storage controller(s) to VM.
2025-11-26 10:38:52 (14924): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 10:38:53 (14924): Adding VirtualBox Guest Additions to VM.
2025-11-26 10:38:53 (14924): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 10:38:53 (14924): forwarding host port 49768 to guest port 80
2025-11-26 10:38:53 (14924): Enabling remote desktop for VM.
2025-11-26 10:38:54 (14924): Required extension pack not installed, remote desktop not enabled.
2025-11-26 10:38:54 (14924): Enabling shared directory for VM.
2025-11-26 10:38:54 (14924): Starting VM using VBoxManage interface. (boinc_c5cba08db3c9c171, slot#5)
2025-11-26 10:38:58 (14924): Successfully started VM. (PID = '5900')
2025-11-26 10:38:58 (14924): Reporting VM Process ID to BOINC.
2025-11-26 10:38:58 (14924): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-26 10:38:58 (14924): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 10:38:58 (14924): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 10:38:58 (14924): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 10:38:58 (14924): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 10:38:58 (14924): Detected: Web Application Enabled (http://localhost:49768)
2025-11-26 10:38:58 (14924): Preference change detected
2025-11-26 10:38:58 (14924): Setting CPU throttle for VM. (100%)
2025-11-26 10:38:59 (14924): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 10:39:00 (14924): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 10:39:00 (14924): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 10:39:03 (14924): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 10:39:03 (14924): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 10:39:03 (14924): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 10:39:10 (14924): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 10:39:10 (14924): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-26 10:39:16 (14924): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 10:39:16 (14924): Guest Log: 00:00:00.000143 main     Log opened 2025-11-26T10:39:14.912900000Z
2025-11-26 10:39:16 (14924): Guest Log: 00:00:00.000227 main     OS Product: Linux
2025-11-26 10:39:16 (14924): Guest Log: 00:00:00.000249 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 10:39:16 (14924): Guest Log: 00:00:00.000266 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 10:39:16 (14924): Guest Log: 00:00:00.000284 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 10:39:16 (14924): Guest Log: 00:00:00.000284 main     Process ID: 1355
2025-11-26 10:39:16 (14924): Guest Log: 00:00:00.000284 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 10:39:16 (14924): Guest Log: 00:00:00.000878 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 10:39:16 (14924): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 10:39:16 (14924): Guest Log: [INFO] Mounting shared directory
2025-11-26 10:39:16 (14924): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 10:39:26 (14924): Guest Log: 00:00:10.007320 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 589 417 141 000ns (GuestNow=1 764 149 965 498 267 000 ns GuestLast=1 764 153 554 915 408 000 ns fSetTimeLastLoop=true )
2025-11-26 10:40:16 (14924): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 10:40:16 (14924): Guest Log: [INFO] Detected branch: prod
2025-11-26 10:40:16 (14924): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 10:40:16 (14924): Guest Log: Copying input files
2025-11-26 10:40:18 (14924): Guest Log: Copied input files into RunAtlas.
2025-11-26 10:40:18 (14924): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 10:40:18 (14924): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 10:40:18 (14924): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 10:40:18 (14924): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 10:41:16 (14924): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 10:41:16 (14924): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 10:41:16 (14924): Guest Log: 2.6.3.0 1658 1 30184 153316 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 10:41:17 (14924): Guest Log: copied the webapp to /var/www
2025-11-26 10:41:17 (14924): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-26 10:41:17 (14924): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-26 10:41:17 (14924): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 10:41:18 (14924): Guest Log:  *** Starting ATLAS job. (PandaID=6896297135 taskID=47556161) ***
2025-11-26 12:19:04 (14924): Status Report: Elapsed Time: '6000.000000'
2025-11-26 12:19:04 (14924): Status Report: CPU Time: '39037.312500'
2025-11-26 13:59:10 (14924): Status Report: Elapsed Time: '12000.000000'
2025-11-26 13:59:10 (14924): Status Report: CPU Time: '80922.906250'
2025-11-26 15:39:16 (14924): Status Report: Elapsed Time: '18000.000000'
2025-11-26 15:39:16 (14924): Status Report: CPU Time: '122816.265625'
2025-11-26 17:19:22 (14924): Status Report: Elapsed Time: '24000.000000'
2025-11-26 17:19:22 (14924): Status Report: CPU Time: '164656.687500'
2025-11-26 18:10:37 (14924): Guest Log:  *** Job finished ***
2025-11-26 18:10:37 (14924): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:09:51,062 | INFO     | job.realtimelogging is not enabled
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:09:52,073 | INFO     | [payload] run_realtimelog thread has finished
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:20,047 | INFO     | [monitor] cgroup control has ended
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:20,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140526094636864)>', '<ExcThread(monitor, started 140525113943808)>']
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:20,883 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:20,883 | INFO     | [monitor] control thread has ended
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,093 | INFO     | all workflow threads have been joined
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,094 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,094 | INFO     | traces error code: 0
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,472 [wrapper] ==== pilot stdout END ====
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,477 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,481 [wrapper] pilotpid: 6071
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,486 [wrapper] Pilot exit status: 0
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,509 [wrapper] pandaids: 6896297135
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,542 [wrapper] cleanup supervisor_pilot  3802 6072
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,550 [wrapper] Test setup, not cleaning
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,566 [wrapper] apfmon messages muted
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,571 [wrapper] ==== wrapper stdout END ====
2025-11-26 18:10:37 (14924): Guest Log: 2025-11-26 17:10:25,575 [wrapper] ==== wrapper stderr END ====
2025-11-26 18:10:37 (14924): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 18:10:37 (14924): Guest Log:     "exeErrorCode": 0,
2025-11-26 18:10:37 (14924): Guest Log:     "exeErrorDiag": "",
2025-11-26 18:10:37 (14924): Guest Log:     "pilotErrorCode": 0,
2025-11-26 18:10:37 (14924): Guest Log:     "pilotErrorDiag": "",
2025-11-26 18:10:37 (14924): Guest Log:  *** Listing of results directory ***
2025-11-26 18:10:37 (14924): Guest Log: total 904772
2025-11-26 18:10:37 (14924): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 25 00:10 pilot3.tar.gz
2025-11-26 18:10:37 (14924): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 25 00:45 queuedata.json
2025-11-26 18:10:37 (14924): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 25 00:46 runpilot2-wrapper.sh
2025-11-26 18:10:37 (14924): Guest Log: -rwxr-xr-x. 1 atlas atlas      8984 Nov 26 09:40 init_data.xml
2025-11-26 18:10:37 (14924): Guest Log: -rwxr-xr-x. 1 atlas atlas    590103 Nov 26 09:40 input.tar.gz
2025-11-26 18:10:37 (14924): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 09:40 start_atlas.sh
2025-11-26 18:10:37 (14924): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 09:40 EVNT.47483658._002072.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 18:10:37 (14924): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 26 09:41 pandaJob.out
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas    991827 Nov 26 09:41 agis_schedconf.cvmfs.json
2025-11-26 18:10:37 (14924): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 09:41 pilot3
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas 912251551 Nov 26 17:09 HITS.47556161._000560.pool.root.1
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 26 17:09 memory_monitor_summary.json
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas        95 Nov 26 17:09 pilot_heartbeat.json
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 17:09 agis_ddmendpoints.agis.ALL.json
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas   1620761 Nov 26 17:09 log.47556161._000560.job.log.tgz.1
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas      8639 Nov 26 17:09 heartbeat.json
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas      4684 Nov 26 17:10 pilotlog.txt
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas   3572442 Nov 26 17:10 log.47556161._000560.job.log.1
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas       353 Nov 26 17:10 output.list
2025-11-26 18:10:37 (14924): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 17:10 runtime_log
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas   5212160 Nov 26 17:10 result.tar.gz
2025-11-26 18:10:37 (14924): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Nov 26 17:10 runtime_log.err
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas       658 Nov 26 17:10 pqbMDmANwh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxFJKDmhHWgVn.diag
2025-11-26 18:10:37 (14924): Guest Log: Looking for outputfile HITS.47556161._000560.pool.root.1
2025-11-26 18:10:37 (14924): Guest Log: HITS file was successfully produced
2025-11-26 18:10:37 (14924): Guest Log: -rw-------. 1 atlas atlas 912251551 Nov 26 17:09 /home/atlas/RunAtlas/HITS.47556161._000560.pool.root.1
2025-11-26 18:10:41 (14924): Guest Log: Successfully finished the ATLAS job!
2025-11-26 18:10:41 (14924): Guest Log: Copying the results back to the shared directory!
2025-11-26 18:10:41 (14924): Guest Log:  *** Contents of shared directory: ***
2025-11-26 18:10:41 (14924): Guest Log: total 1297108
2025-11-26 18:10:41 (14924): Guest Log: -rwxrwxrwx. 1 root root 410147052 Nov 26 09:38 ATLAS.root_0
2025-11-26 18:10:41 (14924): Guest Log: -rwxrwxrwx. 1 root root 912251551 Nov 26  2025 HITS.pool.root.1
2025-11-26 18:10:41 (14924): Guest Log: -rwxrwxrwx. 1 root root      8984 Nov 26 09:38 init_data.xml
2025-11-26 18:10:41 (14924): Guest Log: -rwxrwxrwx. 1 root root    590103 Nov 26 09:37 input.tar.gz
2025-11-26 18:10:41 (14924): Guest Log: -rwxrwxrwx. 1 root root   5212160 Nov 26  2025 result.tar.gz
2025-11-26 18:10:41 (14924): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 09:36 start_atlas.sh
2025-11-26 18:10:41 (14924): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 18:10:41 (14924): VM Completion File Detected.
2025-11-26 18:10:41 (14924): Powering off VM.
2025-11-26 18:10:42 (14924): Successfully stopped VM.
2025-11-26 18:10:42 (14924): Deregistering VM. (boinc_c5cba08db3c9c171, slot#5)
2025-11-26 18:10:42 (14924): Removing network bandwidth throttle group from VM.
2025-11-26 18:10:43 (14924): Removing VM from VirtualBox.
2025-11-26 18:10:48 (14924): called boinc_finish(0)

</stderr_txt>
]]>

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