Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:57:40 (2529548): wrapper (7.7.26015): starting
05:57:40 (2529548): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 05:57:40] Arguments: --nthreads 9
[2025-11-26 05:57:40] Threads: 9
[2025-11-26 05:57:40] Checking for CVMFS
[2025-11-26 05:57:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 05:57:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 05:57:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 05:57:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 05:57:41] 2.13.3.0 12004 29913 364468 153318 0 144 20131457 32935937 33109 16776704 0 156397105 99.514 183601176 33400 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 05:57:41] CVMFS is ok
[2025-11-26 05:57:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 05:57:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 05:57:41] Further information can be found at the LHC@home message board.
[2025-11-26 05:57:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 05:57:41] Checking for apptainer binary...
[2025-11-26 05:57:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 05:57:41] Running /usr/bin/apptainer --version
[2025-11-26 05:57:41] apptainer version 1.4.4-1.el9
[2025-11-26 05:57:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 05:57:41] c6-12-29-4.aglt2.org
[2025-11-26 05:57:41] apptainer works
[2025-11-26 05:57:41] Set ATHENA_PROC_NUMBER=9
[2025-11-26 05:57:41] Set ATHENA_CORE_NUMBER=9
[2025-11-26 05:57:41] Starting ATLAS job with PandaID=6896922982
[2025-11-26 05:57:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:57:00]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:57:00] 2025-11-27 01:56:12,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:57:00] 2025-11-27 01:56:14,062 | INFO     | time since job start (53886s) is within the limit (172800.0s)
[2025-11-26 20:57:00] 2025-11-27 01:56:14,767 | INFO     | monitor loop #3127: job 0:6896922982 is in state 'finished'
[2025-11-26 20:57:00] 2025-11-27 01:56:14,767 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:57:00] 2025-11-27 01:56:16,069 | INFO     | time since job start (53888s) is within the limit (172800.0s)
[2025-11-26 20:57:00] 2025-11-27 01:56:17,275 | INFO     | monitor loop #3128: job 0:6896922982 is in state 'finished'
[2025-11-26 20:57:00] 2025-11-27 01:56:17,276 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:57:00] 2025-11-27 01:56:18,085 | INFO     | time since job start (53890s) is within the limit (172800.0s)
[2025-11-26 20:57:00] 2025-11-27 01:56:19,780 | INFO     | monitor loop #3129: job 0:6896922982 is in state 'finished'
[2025-11-26 20:57:00] 2025-11-27 01:56:19,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:57:00] 2025-11-27 01:56:20,101 | INFO     | time since job start (53892s) is within the limit (172800.0s)
[2025-11-26 20:57:00] 2025-11-27 01:56:22,108 | INFO     | time since job start (53894s) is within the limit (172800.0s)
[2025-11-26 20:57:00] 2025-11-27 01:56:22,326 | INFO     | monitor loop #3130: job 0:6896922982 is in state 'finished'
[2025-11-26 20:57:00] 2025-11-27 01:56:22,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:57:00] 2025-11-27 01:56:24,115 | INFO     | time since job start (53896s) is within the limit (172800.0s)
[2025-11-26 20:57:00] 2025-11-27 01:56:24,763 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:57:00] 2025-11-27 01:56:24,840 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2661.787447916667
[2025-11-26 20:57:00] 2025-11-27 01:56:24,988 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896922982/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:57:00] 2025-11-27 01:56:24,989 | INFO     | extracted standard info from prmon json
[2025-11-26 20:57:00] 2025-11-27 01:56:24,989 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:57:00] 2025-11-27 01:56:24,989 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:57:00] 2025-11-27 01:56:25,020 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:57:00] 2025-11-27 01:56:25,026 | INFO     | sum of square deviations: 213472606010.6297
[2025-11-26 20:57:00] 2025-11-27 01:56:25,041 | INFO     | monitor loop #3131: job 0:6896922982 is in state 'finished'
[2025-11-26 20:57:00] 2025-11-27 01:56:25,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:57:00] 2025-11-27 01:56:25,058 | INFO     | sum of deviations: 205269871851.32513
[2025-11-26 20:57:00] 2025-11-27 01:56:25,058 | INFO     | mean x: 1764181645.0849378
[2025-11-26 20:57:00] 2025-11-27 01:56:25,059 | INFO     | mean y: 3019821.475651189
[2025-11-26 20:57:00] 2025-11-27 01:56:25,059 | INFO     | intersect: -1693372736.6918027
[2025-11-26 20:57:00] 2025-11-27 01:56:25,060 | INFO     | chi2: 19.291566540848454
[2025-11-26 20:57:00] 2025-11-27 01:56:25,061 | INFO     | sum of square deviations: 209867729389.00378
[2025-11-26 20:57:00] 2025-11-27 01:56:25,097 | INFO     | sum of deviations: 516320846346.615
[2025-11-26 20:57:00] 2025-11-27 01:56:25,098 | INFO     | mean x: 1764181492.6093395
[2025-11-26 20:57:00] 2025-11-27 01:56:25,098 | INFO     | mean y: 3032974.144646925
[2025-11-26 20:57:00] 2025-11-27 01:56:25,098 | INFO     | intersect: -4337242131.632598
[2025-11-26 20:57:00] 2025-11-27 01:56:25,099 | INFO     | chi2: 15.838869997525126
[2025-11-26 20:57:00] 2025-11-27 01:56:25,099 | INFO     | current chi2=15.838869997525126 (change=17.897439982452955 %)
[2025-11-26 20:57:00] 2025-11-27 01:56:25,099 | INFO     | right removable region: 877
[2025-11-26 20:57:00] 2025-11-27 01:56:25,100 | INFO     | sum of square deviations: 209865259656.33743
[2025-11-26 20:57:00] 2025-11-27 01:56:25,135 | INFO     | sum of deviations: -45650944360.96976
[2025-11-26 20:57:00] 2025-11-27 01:56:25,136 | INFO     | mean x: 1764181797.6127563
[2025-11-26 20:57:00] 2025-11-27 01:56:25,136 | INFO     | mean y: 3030415.979498861
[2025-11-26 20:57:00] 2025-11-27 01:56:25,136 | INFO     | intersect: 386784093.06420225
[2025-11-26 20:57:00] 2025-11-27 01:56:25,137 | INFO     | chi2: 17.167811754665063
[2025-11-26 20:57:00] 2025-11-27 01:56:25,137 | INFO     | current chi2=17.167811754665063 (change=11.008721254888751 %)
[2025-11-26 20:57:00] 2025-11-27 01:56:25,137 | INFO     | left removable region: 10
[2025-11-26 20:57:00] 2025-11-27 01:56:25,139 | INFO     | sum of square deviations: 202075741316.7501
[2025-11-26 20:57:00] 2025-11-27 01:56:25,233 | INFO     | sum of deviations: 257424042975.37244
[2025-11-26 20:57:00] 2025-11-27 01:56:25,234 | INFO     | mean x: 1764181767.1672435
[2025-11-26 20:57:00] 2025-11-27 01:56:25,234 | INFO     | mean y: 3048998.9215686275
[2025-11-26 20:57:00] 2025-11-27 01:56:25,234 | INFO     | intersect: -2244340025.05716
[2025-11-26 20:57:00] 2025-11-27 01:56:25,235 | INFO     | chi2: 13.030812118434536
[2025-11-26 20:57:00] 2025-11-27 01:56:25,236 | INFO     | current memory leak: 1.27 B/s (using 867 data points, chi2=13.03)
[2025-11-26 20:57:00] 2025-11-27 01:56:25,237 | INFO     | could have reported an average CPU frequency of 2623 MHz (33 samples)
[2025-11-26 20:57:00] 2025-11-27 01:56:25,238 | INFO     | ..............................
[2025-11-26 20:57:00] 2025-11-27 01:56:25,238 | INFO     | . Timing measurements:
[2025-11-26 20:57:00] 2025-11-27 01:56:25,238 | INFO     | . get job = 0 s
[2025-11-26 20:57:00] 2025-11-27 01:56:25,238 | INFO     | . initial setup = 3 s
[2025-11-26 20:57:00] 2025-11-27 01:56:25,238 | INFO     | . payload setup = 14 s
[2025-11-26 20:57:00] 2025-11-27 01:56:25,238 | INFO     | . stage-in = 0 s
[2025-11-26 20:57:00] 2025-11-27 01:56:25,238 | INFO     | . payload execution = 53819 s
[2025-11-26 20:57:00] 2025-11-27 01:56:25,238 | INFO     | . stage-out = 8 s
[2025-11-26 20:57:00] 2025-11-27 01:56:25,238 | INFO     | . log creation = 1 s
[2025-11-26 20:57:00] 2025-11-27 01:56:25,238 | INFO     | ..............................
[2025-11-26 20:57:00] 2025-11-27 01:56:26,007 | INFO     | 
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | job summary report
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | --------------------------------------------------
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | PanDA job id: 6896922982
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | task id: 47556173
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | errors: (none)
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | pilot state: finished 
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | transexitcode: 0
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | exeerrorcode: 0
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | exeerrordiag: 
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | exitcode: 0
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | exitmsg: OK
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | cpuconsumptiontime: 263874 s
[2025-11-26 20:57:00] 2025-11-27 01:56:26,008 | INFO     | nevents: 1000
[2025-11-26 20:57:00] 2025-11-27 01:56:26,009 | INFO     | neventsw: 0
[2025-11-26 20:57:00] 2025-11-27 01:56:26,009 | INFO     | pid: 2542629
[2025-11-26 20:57:00] 2025-11-27 01:56:26,009 | INFO     | pgrp: 2542629
[2025-11-26 20:57:00] 2025-11-27 01:56:26,009 | INFO     | corecount: 9
[2025-11-26 20:57:00] 2025-11-27 01:56:26,009 | INFO     | event service: False
[2025-11-26 20:57:00] 2025-11-27 01:56:26,009 | INFO     | sizes: {0: 2284079, 1: 2284334, 12: 2284624, 53836: 2333732, 53845: 2342726, 53846: 2342782, 53874: 2343220}
[2025-11-26 20:57:00] 2025-11-27 01:56:26,009 | INFO     | --------------------------------------------------
[2025-11-26 20:57:00] 2025-11-27 01:56:26,009 | INFO     | 
[2025-11-26 20:57:00] 2025-11-27 01:56:26,009 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 20:57:00] 2025-11-27 01:56:26,095 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,095 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,096 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,097 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,097 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,097 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:57:00] 2025-11-27 01:56:26,097 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,097 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:57:00] 2025-11-27 01:56:26,097 | INFO     | job 6896922982 has completed (purged errors)
[2025-11-26 20:57:00] 2025-11-27 01:56:26,097 | INFO     | overall cleanup function is called
[2025-11-26 20:57:00] 2025-11-27 01:56:27,133 | INFO     | --- collectZombieJob: --- 10, [2542629]
[2025-11-26 20:57:00] 2025-11-27 01:56:27,134 | INFO     | zombie collector waiting for pid 2542629
[2025-11-26 20:57:00] 2025-11-27 01:56:27,134 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:57:00] 2025-11-27 01:56:27,134 | INFO     | collected zombie processes
[2025-11-26 20:57:00] 2025-11-27 01:56:27,134 | INFO     | will attempt to kill all subprocesses of pid=2542629
[2025-11-26 20:57:00] 2025-11-27 01:56:28,986 | INFO     | process IDs to be killed: [2542629] (in reverse order)
[2025-11-26 20:57:00] 2025-11-27 01:56:29,584 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:57:00] 2025-11-27 01:56:29,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:57:00] 2025-11-27 01:56:29,653 | INFO     | did not find any defunct processes belonging to 2542629
[2025-11-26 20:57:00] 2025-11-27 01:56:29,740 | INFO     | did not find any defunct processes belonging to 2542629
[2025-11-26 20:57:00] 2025-11-27 01:56:29,746 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:57:00] 2025-11-27 01:56:29,748 | INFO     | ready for new job
[2025-11-26 20:57:00] 2025-11-27 01:56:29,749 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:57:00] 2025-11-27 01:56:29,765 | INFO     | ***************************************
[2025-11-26 20:57:00] 2025-11-27 01:56:29,765 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:57:00] 2025-11-27 01:56:29,765 | INFO     | ***************************************
[2025-11-26 20:57:00] 2025-11-27 01:56:29,765 | INFO     | 
[2025-11-26 20:57:00] 2025-11-27 01:56:29,792 | INFO     | architecture information:
[2025-11-26 20:57:00] 2025-11-27 01:56:29,796 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:57:00] 2025-11-27 01:56:29,976 | INFO     | cat /etc/os-release:
[2025-11-26 20:57:00] NAME="CentOS Linux"
[2025-11-26 20:57:00] VERSION="7 (Core)"
[2025-11-26 20:57:00] ID="centos"
[2025-11-26 20:57:00] ID_LIKE="rhel fedora"
[2025-11-26 20:57:00] VERSION_ID="7"
[2025-11-26 20:57:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:57:00] ANSI_COLOR="0;31"
[2025-11-26 20:57:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:57:00] HOME_URL="https://www.centos.org/"
[2025-11-26 20:57:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:57:00] 
[2025-11-26 20:57:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:57:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:57:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:57:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:57:00] 
[2025-11-26 20:57:00] 2025-11-27 01:56:29,977 | INFO     | ***************************************
[2025-11-26 20:57:00] 2025-11-27 01:56:30,483 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 20:57:00] 2025-11-27 01:56:30,614 | INFO     | sufficient remaining disk space (85802876928 B)
[2025-11-26 20:57:00] 2025-11-27 01:56:30,614 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:57:00] 2025-11-27 01:56:30,614 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:57:00] 2025-11-27 01:56:30,614 | INFO     | update_server=False
[2025-11-26 20:57:00] 2025-11-27 01:56:30,614 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:57:00] 2025-11-27 01:56:30,684 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:57:00] 2025-11-27 01:56:30,808 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:57:00] 2025-11-27 01:56:30,910 | INFO     | all payload control threads have been joined
[2025-11-26 20:57:00] 2025-11-27 01:56:31,032 | INFO     | all data control threads have been joined
[2025-11-26 20:57:00] 2025-11-27 01:56:31,088 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:57:00] 2025-11-27 01:56:31,088 | INFO     | aborting loop
[2025-11-26 20:57:00] 2025-11-27 01:56:31,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:57:00] 2025-11-27 01:56:31,621 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:31,671 | INFO     | [job] validate thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:31,690 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:31,916 | INFO     | [payload] control thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:32,038 | INFO     | [data] control thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:32,093 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:32,152 | INFO     | all job control threads have been joined
[2025-11-26 20:57:00] 2025-11-27 01:56:32,374 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:32,471 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:32,530 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:32,784 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:32,798 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:32,834 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:32,904 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:32,906 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:33,159 | INFO     | [job] control thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:35,183 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:57:00] 2025-11-27 01:56:44,337 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:57:00] 2025-11-27 01:56:45,459 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627314358080)>', '<ExcThread(monitor, started 140626641262336)>']
[2025-11-26 20:57:00] 2025-11-27 01:56:50,509 | INFO     | all workflow threads have been joined
[2025-11-26 20:57:00] 2025-11-27 01:56:50,512 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:57:00] 2025-11-27 01:56:50,513 | INFO     | traces error code: 0
[2025-11-26 20:57:00] 2025-11-27 01:56:50,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:57:00] 2025-11-27 01:56:58,897 | INFO     | PID=2533521 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:57:00] 2025-11-27 01:56:58,900 | INFO     | .. there are 55 such processes running
[2025-11-26 20:57:00] 2025-11-27 01:56:58,901 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:57:00] 2025-11-27 01:56:58,901 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:57:00] 2025-11-27 01:56:58,901 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:57:00] 2025-11-27 01:56:58,901 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:57:00] 2025-11-27 01:56:58,901 | INFO     | [monitor] control thread has ended
[2025-11-26 20:57:00] 2025-11-27 01:56:59,149 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:57:00] 2025-11-27 01:56:59,180 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:57:00] 2025-11-27 01:56:59,200 [wrapper] pilotpid: 2533521
[2025-11-26 20:57:00] 2025-11-27 01:56:59,218 [wrapper] Pilot exit status: 0
[2025-11-26 20:57:00] 2025-11-27 01:56:59,233 [wrapper] pandaids: 6896922982
[2025-11-26 20:57:00] 2025-11-27 01:56:59,414 [wrapper] cleanup supervisor_pilot 2387864 2533522
[2025-11-26 20:57:00] 2025-11-27 01:56:59,425 [wrapper] Test setup, not cleaning
[2025-11-26 20:57:00] 2025-11-27 01:56:59,439 [wrapper] apfmon messages muted
[2025-11-26 20:57:00] 2025-11-27 01:56:59,463 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:57:00] 2025-11-27 01:56:59,482 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:57:00]  *** Error codes and diagnostics ***
[2025-11-26 20:57:00]     "exeErrorCode": 0,
[2025-11-26 20:57:00]     "exeErrorDiag": "",
[2025-11-26 20:57:00]     "pilotErrorCode": 0,
[2025-11-26 20:57:00]     "pilotErrorDiag": "",
[2025-11-26 20:57:00]  *** Listing of results directory ***
[2025-11-26 20:57:00] total 1310888
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 05:51 pilot3.tar.gz
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 06:21 queuedata.json
[2025-11-26 20:57:00] -rwx------. 1 boincer umatlas     36292 Nov 25 06:22 runpilot2-wrapper.sh
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas       100 Nov 26 05:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:57:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 05:57 run_atlas
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas       105 Nov 26 05:57 job.xml
[2025-11-26 20:57:00] -rw-r--r--. 2 boincer umatlas 410309399 Nov 26 05:57 EVNT.47483658._003077.pool.root.1
[2025-11-26 20:57:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 05:57 start_atlas.sh
[2025-11-26 20:57:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 05:57 shared
[2025-11-26 20:57:00] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 05:57 input.tar.gz
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas         0 Nov 26 05:57 boinc_lockfile
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas      2781 Nov 26 05:57 pandaJob.out
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas        57 Nov 26 05:57 setup.sh.local
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas    991827 Nov 26 05:58 agis_schedconf.cvmfs.json
[2025-11-26 20:57:00] drwx------. 5 boincer umatlas      4096 Nov 26 05:58 pilot3
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:22 boinc_task_state.xml
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas      6881 Nov 26 20:46 init_data.xml
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas 910483071 Nov 26 20:54 HITS.47556173._000591.pool.root.1
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas      1058 Nov 26 20:55 memory_monitor_summary.json
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:55 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas   2149957 Nov 26 20:55 log.47556173._000591.job.log.tgz.1
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas      8620 Nov 26 20:56 heartbeat.json
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas        95 Nov 26 20:56 pilot_heartbeat.json
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas       823 Nov 26 20:56 pilotlog.txt
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:56 wrapper_checkpoint.txt
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:56 boinc_mmap_file
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas   6670388 Nov 26 20:56 log.47556173._000591.job.log.1
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas       353 Nov 26 20:56 output.list
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:56 runtime_log
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas   8837120 Nov 26 20:56 result.tar.gz
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 20:56 runtime_log.err
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas       662 Nov 26 20:56 iCeMDmTJ6h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOLMKDmG5gJJo.diag
[2025-11-26 20:57:00] -rw-r--r--. 1 boincer umatlas     21785 Nov 26 20:57 stderr.txt
[2025-11-26 20:57:00] HITS file was successfully produced:
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas 910483071 Nov 26 20:54 shared/HITS.pool.root.1
[2025-11-26 20:57:00]  *** Contents of shared directory: ***
[2025-11-26 20:57:00] total 1299076
[2025-11-26 20:57:00] -rw-r--r--. 2 boincer umatlas 410309399 Nov 26 05:57 ATLAS.root_0
[2025-11-26 20:57:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 05:57 start_atlas.sh
[2025-11-26 20:57:00] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 05:57 input.tar.gz
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas 910483071 Nov 26 20:54 HITS.pool.root.1
[2025-11-26 20:57:00] -rw-------. 1 boincer umatlas   8837120 Nov 26 20:56 result.tar.gz
20:57:01 (2529548): run_atlas exited; CPU time 266076.191167
20:57:01 (2529548): called boinc_finish(0)

</stderr_txt>
]]>

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