Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:43:41 (14871): wrapper (7.7.26015): starting
04:43:41 (14871): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 04:43:41] Arguments: --nthreads 8
[2025-11-26 04:43:41] Threads: 8
[2025-11-26 04:43:41] Checking for CVMFS
[2025-11-26 04:43:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 04:43:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 04:43:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 04:43:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 04:43:41] 2.11.2.0 2802 73135 79616 153316 2 82 18162210 20275200 1 130560 0 20909156 99.919 3505238 21214 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 04:43:41] CVMFS is ok
[2025-11-26 04:43:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 04:43:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 04:43:41] Further information can be found at the LHC@home message board.
[2025-11-26 04:43:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 04:43:41] Checking for apptainer binary...
[2025-11-26 04:43:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 04:43:41] Running /usr/bin/apptainer --version
[2025-11-26 04:43:41] apptainer version 1.3.2-1.el7
[2025-11-26 04:43:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 04:43:43] c-204-8.aglt2.org
[2025-11-26 04:43:43] apptainer works
[2025-11-26 04:43:43] Set ATHENA_PROC_NUMBER=8
[2025-11-26 04:43:43] Set ATHENA_CORE_NUMBER=8
[2025-11-26 04:43:43] Starting ATLAS job with PandaID=6896922930
[2025-11-26 04:43:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:37:22]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:37:22] 2025-11-26 22:36:36,217 | INFO     | monitor loop #3405: job 0:6896922930 is in state 'finished'
[2025-11-26 17:37:22] 2025-11-26 22:36:36,218 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:37:22] 2025-11-26 22:36:37,714 | INFO     | time since job start (46357s) is within the limit (172800.0s)
[2025-11-26 17:37:22] 2025-11-26 22:36:38,231 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 17:37:22] 2025-11-26 22:36:38,237 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2025-11-26 17:37:22] 2025-11-26 22:36:38,239 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896922930/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:37:22] 2025-11-26 22:36:38,240 | INFO     | extracted standard info from prmon json
[2025-11-26 17:37:22] 2025-11-26 22:36:38,240 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:37:22] 2025-11-26 22:36:38,240 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:37:22] 2025-11-26 22:36:38,253 | INFO     | fitting pss+swap vs Time
[2025-11-26 17:37:22] 2025-11-26 22:36:38,254 | INFO     | sum of square deviations: 136118607872.99892
[2025-11-26 17:37:22] 2025-11-26 22:36:38,266 | INFO     | sum of deviations: 872216819334.3505
[2025-11-26 17:37:22] 2025-11-26 22:36:38,266 | INFO     | mean x: 1764173422.0513158
[2025-11-26 17:37:22] 2025-11-26 22:36:38,266 | INFO     | mean y: 2866064.2986842105
[2025-11-26 17:37:22] 2025-11-26 22:36:38,266 | INFO     | intersect: -11301552596.605257
[2025-11-26 17:37:22] 2025-11-26 22:36:38,267 | INFO     | chi2: 5.970797977171909
[2025-11-26 17:37:22] 2025-11-26 22:36:38,268 | INFO     | sum of square deviations: 133449811206.46883
[2025-11-26 17:37:22] 2025-11-26 22:36:38,280 | INFO     | sum of deviations: 1117764641267.0654
[2025-11-26 17:37:22] 2025-11-26 22:36:38,280 | INFO     | mean x: 1764173269.554967
[2025-11-26 17:37:22] 2025-11-26 22:36:38,280 | INFO     | mean y: 2880088.3960264903
[2025-11-26 17:37:22] 2025-11-26 22:36:38,280 | INFO     | intersect: -14773690098.924452
[2025-11-26 17:37:22] 2025-11-26 22:36:38,281 | INFO     | chi2: 2.97560443685245
[2025-11-26 17:37:22] 2025-11-26 22:36:38,281 | INFO     | current chi2=2.97560443685245 (change=50.164040916657235 %)
[2025-11-26 17:37:22] 2025-11-26 22:36:38,282 | INFO     | sum of square deviations: 130816131477.41846
[2025-11-26 17:37:22] 2025-11-26 22:36:38,293 | INFO     | sum of deviations: 1184557322703.8752
[2025-11-26 17:37:22] 2025-11-26 22:36:38,294 | INFO     | mean x: 1764173117.0586667
[2025-11-26 17:37:22] 2025-11-26 22:36:38,294 | INFO     | mean y: 2883946.9346666667
[2025-11-26 17:37:22] 2025-11-26 22:36:38,294 | INFO     | intersect: -15971936289.130032
[2025-11-26 17:37:22] 2025-11-26 22:36:38,295 | INFO     | chi2: 2.585158102070301
[2025-11-26 17:37:22] 2025-11-26 22:36:38,295 | INFO     | current chi2=2.585158102070301 (change=13.121580608851266 %)
[2025-11-26 17:37:22] 2025-11-26 22:36:38,295 | INFO     | right removable region: 749
[2025-11-26 17:37:22] 2025-11-26 22:36:38,296 | INFO     | sum of square deviations: 133449555616.46881
[2025-11-26 17:37:22] 2025-11-26 22:36:38,307 | INFO     | sum of deviations: 660140696131.5115
[2025-11-26 17:37:22] 2025-11-26 22:36:38,307 | INFO     | mean x: 1764173574.554967
[2025-11-26 17:37:22] 2025-11-26 22:36:38,308 | INFO     | mean y: 2878161.650331126
[2025-11-26 17:37:22] 2025-11-26 22:36:38,308 | INFO     | intersect: -8724035661.50676
[2025-11-26 17:37:22] 2025-11-26 22:36:38,308 | INFO     | chi2: 3.594513910839972
[2025-11-26 17:37:22] 2025-11-26 22:36:38,309 | INFO     | current chi2=3.594513910839972 (change=39.79843356645392 %)
[2025-11-26 17:37:22] 2025-11-26 22:36:38,309 | INFO     | sum of square deviations: 130815712773.64796
[2025-11-26 17:37:22] 2025-11-26 22:36:38,321 | INFO     | sum of deviations: 615162151831.7522
[2025-11-26 17:37:22] 2025-11-26 22:36:38,321 | INFO     | mean x: 1764173727.056
[2025-11-26 17:37:22] 2025-11-26 22:36:38,321 | INFO     | mean y: 2880764.744
[2025-11-26 17:37:22] 2025-11-26 22:36:38,321 | INFO     | intersect: -8293163212.928909
[2025-11-26 17:37:22] 2025-11-26 22:36:38,322 | INFO     | chi2: 3.550529021507672
[2025-11-26 17:37:22] 2025-11-26 22:36:38,322 | INFO     | current chi2=3.550529021507672 (change=1.2236672446768015 %)
[2025-11-26 17:37:22] 2025-11-26 22:36:38,322 | INFO     | left removable region: 20
[2025-11-26 17:37:22] 2025-11-26 22:36:38,323 | INFO     | sum of square deviations: 120132291199.40973
[2025-11-26 17:37:22] 2025-11-26 22:36:38,334 | INFO     | sum of deviations: 877639005866.3607
[2025-11-26 17:37:22] 2025-11-26 22:36:38,334 | INFO     | mean x: 1764173696.5624142
[2025-11-26 17:37:22] 2025-11-26 22:36:38,334 | INFO     | mean y: 2902736.7722908095
[2025-11-26 17:37:22] 2025-11-26 22:36:38,334 | INFO     | intersect: -12885452540.299353
[2025-11-26 17:37:22] 2025-11-26 22:36:38,335 | INFO     | chi2: 0.11204442557345279
[2025-11-26 17:37:22] 2025-11-26 22:36:38,335 | INFO     | current memory leak: 7.31 B/s (using 729 data points, chi2=0.11)
[2025-11-26 17:37:22] 2025-11-26 22:36:38,336 | INFO     | could have reported an average CPU frequency of 2186 MHz (29 samples)
[2025-11-26 17:37:22] 2025-11-26 22:36:38,336 | INFO     | ..............................
[2025-11-26 17:37:22] 2025-11-26 22:36:38,336 | INFO     | . Timing measurements:
[2025-11-26 17:37:22] 2025-11-26 22:36:38,336 | INFO     | . get job = 0 s
[2025-11-26 17:37:22] 2025-11-26 22:36:38,336 | INFO     | . initial setup = 2 s
[2025-11-26 17:37:22] 2025-11-26 22:36:38,336 | INFO     | . payload setup = 9 s
[2025-11-26 17:37:22] 2025-11-26 22:36:38,337 | INFO     | . stage-in = 0 s
[2025-11-26 17:37:22] 2025-11-26 22:36:38,337 | INFO     | . payload execution = 46316 s
[2025-11-26 17:37:22] 2025-11-26 22:36:38,337 | INFO     | . stage-out = 4 s
[2025-11-26 17:37:22] 2025-11-26 22:36:38,337 | INFO     | . log creation = 0 s
[2025-11-26 17:37:22] 2025-11-26 22:36:38,337 | INFO     | ..............................
[2025-11-26 17:37:22] 2025-11-26 22:36:38,429 | INFO     | 
[2025-11-26 17:37:22] 2025-11-26 22:36:38,430 | INFO     | job summary report
[2025-11-26 17:37:22] 2025-11-26 22:36:38,430 | INFO     | --------------------------------------------------
[2025-11-26 17:37:22] 2025-11-26 22:36:38,430 | INFO     | PanDA job id: 6896922930
[2025-11-26 17:37:22] 2025-11-26 22:36:38,430 | INFO     | task id: 47556161
[2025-11-26 17:37:22] 2025-11-26 22:36:38,430 | INFO     | errors: (none)
[2025-11-26 17:37:22] 2025-11-26 22:36:38,431 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:37:22] 2025-11-26 22:36:38,431 | INFO     | pilot state: finished 
[2025-11-26 17:37:22] 2025-11-26 22:36:38,431 | INFO     | transexitcode: 0
[2025-11-26 17:37:22] 2025-11-26 22:36:38,431 | INFO     | exeerrorcode: 0
[2025-11-26 17:37:22] 2025-11-26 22:36:38,431 | INFO     | exeerrordiag: 
[2025-11-26 17:37:22] 2025-11-26 22:36:38,432 | INFO     | exitcode: 0
[2025-11-26 17:37:22] 2025-11-26 22:36:38,432 | INFO     | exitmsg: OK
[2025-11-26 17:37:22] 2025-11-26 22:36:38,432 | INFO     | cpuconsumptiontime: 358952 s
[2025-11-26 17:37:22] 2025-11-26 22:36:38,432 | INFO     | nevents: 1000
[2025-11-26 17:37:22] 2025-11-26 22:36:38,432 | INFO     | neventsw: 0
[2025-11-26 17:37:22] 2025-11-26 22:36:38,432 | INFO     | pid: 25015
[2025-11-26 17:37:22] 2025-11-26 22:36:38,433 | INFO     | pgrp: 25015
[2025-11-26 17:37:22] 2025-11-26 22:36:38,433 | INFO     | corecount: 8
[2025-11-26 17:37:22] 2025-11-26 22:36:38,433 | INFO     | event service: False
[2025-11-26 17:37:22] 2025-11-26 22:36:38,433 | INFO     | sizes: {0: 2284264, 6: 2284526, 11: 2284554, 46329: 2330951, 46333: 2339945, 46334: 2340001, 46341: 2340375}
[2025-11-26 17:37:22] 2025-11-26 22:36:38,433 | INFO     | --------------------------------------------------
[2025-11-26 17:37:22] 2025-11-26 22:36:38,433 | INFO     | 
[2025-11-26 17:37:22] 2025-11-26 22:36:38,434 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 17:37:22] 2025-11-26 22:36:38,460 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,461 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,461 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,461 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,461 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,462 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,462 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,462 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,462 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,462 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,462 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,463 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,463 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,463 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,463 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,463 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,464 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,464 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:37:22] 2025-11-26 22:36:38,464 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,464 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:37:22] 2025-11-26 22:36:38,464 | INFO     | job 6896922930 has completed (purged errors)
[2025-11-26 17:37:22] 2025-11-26 22:36:38,465 | INFO     | overall cleanup function is called
[2025-11-26 17:37:22] 2025-11-26 22:36:38,834 | INFO     | PID=18586 has CPU usage=15.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 17:37:22] 2025-11-26 22:36:39,480 | INFO     | --- collectZombieJob: --- 10, [25015]
[2025-11-26 17:37:22] 2025-11-26 22:36:39,481 | INFO     | zombie collector waiting for pid 25015
[2025-11-26 17:37:22] 2025-11-26 22:36:39,481 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:37:22] 2025-11-26 22:36:39,481 | INFO     | collected zombie processes
[2025-11-26 17:37:22] 2025-11-26 22:36:39,481 | INFO     | will attempt to kill all subprocesses of pid=25015
[2025-11-26 17:37:22] 2025-11-26 22:36:39,576 | INFO     | process IDs to be killed: [25015] (in reverse order)
[2025-11-26 17:37:22] 2025-11-26 22:36:39,632 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:37:22] 2025-11-26 22:36:39,632 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:37:22] 2025-11-26 22:36:39,637 | INFO     | did not find any defunct processes belonging to 25015
[2025-11-26 17:37:22] 2025-11-26 22:36:39,640 | INFO     | did not find any defunct processes belonging to 25015
[2025-11-26 17:37:22] 2025-11-26 22:36:39,643 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:37:22] 2025-11-26 22:36:39,644 | INFO     | ready for new job
[2025-11-26 17:37:22] 2025-11-26 22:36:39,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:37:22] 2025-11-26 22:36:39,648 | INFO     | ***************************************
[2025-11-26 17:37:22] 2025-11-26 22:36:39,648 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:37:22] 2025-11-26 22:36:39,648 | INFO     | ***************************************
[2025-11-26 17:37:22] 2025-11-26 22:36:39,649 | INFO     | 
[2025-11-26 17:37:22] 2025-11-26 22:36:39,649 | INFO     | architecture information:
[2025-11-26 17:37:22] 2025-11-26 22:36:39,650 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:37:22] 2025-11-26 22:36:39,668 | INFO     | cat /etc/os-release:
[2025-11-26 17:37:22] NAME="CentOS Linux"
[2025-11-26 17:37:22] VERSION="7 (Core)"
[2025-11-26 17:37:22] ID="centos"
[2025-11-26 17:37:22] ID_LIKE="rhel fedora"
[2025-11-26 17:37:22] VERSION_ID="7"
[2025-11-26 17:37:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:37:22] ANSI_COLOR="0;31"
[2025-11-26 17:37:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:37:22] HOME_URL="https://www.centos.org/"
[2025-11-26 17:37:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:37:22] 
[2025-11-26 17:37:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:37:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:37:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:37:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:37:22] 
[2025-11-26 17:37:22] 2025-11-26 22:36:39,668 | INFO     | ***************************************
[2025-11-26 17:37:22] 2025-11-26 22:36:40,172 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 17:37:22] 2025-11-26 22:36:40,193 | INFO     | sufficient remaining disk space (17461936128 B)
[2025-11-26 17:37:22] 2025-11-26 22:36:40,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:37:22] 2025-11-26 22:36:40,193 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:37:22] 2025-11-26 22:36:40,194 | INFO     | update_server=False
[2025-11-26 17:37:22] 2025-11-26 22:36:40,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:37:22] 2025-11-26 22:36:40,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:37:22] 2025-11-26 22:36:40,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:37:22] 2025-11-26 22:36:40,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:37:22] 2025-11-26 22:36:40,195 | INFO     | aborting loop
[2025-11-26 17:37:22] 2025-11-26 22:36:40,786 | INFO     | all job control threads have been joined
[2025-11-26 17:37:22] 2025-11-26 22:36:41,095 | INFO     | all payload control threads have been joined
[2025-11-26 17:37:22] 2025-11-26 22:36:41,135 | INFO     | all data control threads have been joined
[2025-11-26 17:37:22] 2025-11-26 22:36:41,196 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:41,199 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:41,201 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:41,559 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:41,572 | INFO     | [job] validate thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:41,585 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:41,788 | INFO     | [job] control thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:41,973 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:42,100 | INFO     | [payload] control thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:42,135 | INFO     | [data] control thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:42,201 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:42,209 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:42,342 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:42,664 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:42,702 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:36:42,739 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:37:22] 2025-11-26 22:36:46,745 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:37:22] 2025-11-26 22:37:11,046 | INFO     | PID=18586 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 17:37:22] 2025-11-26 22:37:11,047 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:37:22] 2025-11-26 22:37:11,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:37:22] 2025-11-26 22:37:11,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:37:22] 2025-11-26 22:37:16,722 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:37:22] 2025-11-26 22:37:17,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140325643745088)>', '<ExcThread(monitor, started 140324726875904)>']
[2025-11-26 17:37:22] 2025-11-26 22:37:18,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:37:22] 2025-11-26 22:37:18,079 | INFO     | [monitor] control thread has ended
[2025-11-26 17:37:22] 2025-11-26 22:37:22,161 | INFO     | all workflow threads have been joined
[2025-11-26 17:37:22] 2025-11-26 22:37:22,162 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:37:22] 2025-11-26 22:37:22,162 | INFO     | traces error code: 0
[2025-11-26 17:37:22] 2025-11-26 22:37:22,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:37:22] 2025-11-26 22:37:22,283 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:37:22] 2025-11-26 22:37:22,288 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:37:22] 2025-11-26 22:37:22,292 [wrapper] pilotpid: 18586
[2025-11-26 17:37:22] 2025-11-26 22:37:22,296 [wrapper] Pilot exit status: 0
[2025-11-26 17:37:22] 2025-11-26 22:37:22,313 [wrapper] pandaids: 6896922930
[2025-11-26 17:37:22] 2025-11-26 22:37:22,363 [wrapper] cleanup supervisor_pilot 22578 18587
[2025-11-26 17:37:22] 2025-11-26 22:37:22,368 [wrapper] Test setup, not cleaning
[2025-11-26 17:37:22] 2025-11-26 22:37:22,373 [wrapper] apfmon messages muted
[2025-11-26 17:37:22] 2025-11-26 22:37:22,377 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:37:22] 2025-11-26 22:37:22,382 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:37:22]  *** Error codes and diagnostics ***
[2025-11-26 17:37:22]     "exeErrorCode": 0,
[2025-11-26 17:37:22]     "exeErrorDiag": "",
[2025-11-26 17:37:22]     "pilotErrorCode": 0,
[2025-11-26 17:37:22]     "pilotErrorDiag": "",
[2025-11-26 17:37:22]  *** Listing of results directory ***
[2025-11-26 17:37:22] total 1324356
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 05:51 pilot3.tar.gz
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 06:16 queuedata.json
[2025-11-26 17:37:22] -rwx------ 1 boincer umatlas     36292 Nov 25 06:19 runpilot2-wrapper.sh
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas       100 Nov 26 04:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:37:22] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 04:43 run_atlas
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas       105 Nov 26 04:43 job.xml
[2025-11-26 17:37:22] -rw-r--r-- 2 boincer umatlas 410648107 Nov 26 04:43 EVNT.47483658._002145.pool.root.1
[2025-11-26 17:37:22] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 04:43 start_atlas.sh
[2025-11-26 17:37:22] drwxrwx--x 2 boincer umatlas      4096 Nov 26 04:43 shared
[2025-11-26 17:37:22] -rw-r--r-- 2 boincer umatlas    590109 Nov 26 04:43 input.tar.gz
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas         0 Nov 26 04:43 boinc_lockfile
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 04:43 pandaJob.out
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas        57 Nov 26 04:43 setup.sh.local
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas    991827 Nov 26 04:43 agis_schedconf.cvmfs.json
[2025-11-26 17:37:22] drwx------ 5 boincer umatlas      4096 Nov 26 04:44 pilot3
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas       532 Nov 26 17:25 boinc_task_state.xml
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas      5912 Nov 26 17:31 init_data.xml
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas 924802523 Nov 26 17:35 HITS.47556161._001283.pool.root.1
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas      1064 Nov 26 17:36 memory_monitor_summary.json
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas        95 Nov 26 17:36 pilot_heartbeat.json
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas   1516240 Nov 26 17:36 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas   2005472 Nov 26 17:36 log.47556161._001283.job.log.tgz.1
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas      8656 Nov 26 17:36 heartbeat.json
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas        29 Nov 26 17:36 wrapper_checkpoint.txt
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 17:36 boinc_mmap_file
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas      4746 Nov 26 17:37 pilotlog.txt
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas   6377108 Nov 26 17:37 log.47556161._001283.job.log.1
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas       353 Nov 26 17:37 output.list
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas       620 Nov 26 17:37 runtime_log
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas   8407040 Nov 26 17:37 result.tar.gz
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas      9338 Nov 26 17:37 runtime_log.err
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas       667 Nov 26 17:37 aUjLDmTG6h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4KMKDmKrlhim.diag
[2025-11-26 17:37:22] -rw-r--r-- 1 boincer umatlas     21392 Nov 26 17:37 stderr.txt
[2025-11-26 17:37:22] HITS file was successfully produced:
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas 924802523 Nov 26 17:35 shared/HITS.pool.root.1
[2025-11-26 17:37:22]  *** Contents of shared directory: ***
[2025-11-26 17:37:22] total 1312968
[2025-11-26 17:37:22] -rw-r--r-- 2 boincer umatlas 410648107 Nov 26 04:43 ATLAS.root_0
[2025-11-26 17:37:22] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 04:43 start_atlas.sh
[2025-11-26 17:37:22] -rw-r--r-- 2 boincer umatlas    590109 Nov 26 04:43 input.tar.gz
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas 924802523 Nov 26 17:35 HITS.pool.root.1
[2025-11-26 17:37:22] -rw------- 1 boincer umatlas   8407040 Nov 26 17:37 result.tar.gz
17:37:24 (14871): run_atlas exited; CPU time 354840.603186
17:37:24 (14871): called boinc_finish(0)

</stderr_txt>
]]>

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