Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:47:50 (8052): wrapper (7.7.26015): starting
03:47:50 (8052): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 03:47:50] Arguments: --nthreads 12
[2025-11-26 03:47:50] Threads: 12
[2025-11-26 03:47:50] Checking for CVMFS
[2025-11-26 03:47:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 03:47:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 03:47:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 03:47:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 03:47:50] 2.11.2.0 2947 287415 88396 153315 2 81 16670365 20275200 1 130560 1 129502295 99.971 16433850 12793 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 03:47:50] CVMFS is ok
[2025-11-26 03:47:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 03:47:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 03:47:50] Further information can be found at the LHC@home message board.
[2025-11-26 03:47:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 03:47:50] Checking for apptainer binary...
[2025-11-26 03:47:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 03:47:50] Running /usr/bin/apptainer --version
[2025-11-26 03:47:50] apptainer version 1.3.2-1.el7
[2025-11-26 03:47:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 03:47:52] c-205-18.aglt2.org
[2025-11-26 03:47:52] apptainer works
[2025-11-26 03:47:52] Set ATHENA_PROC_NUMBER=12
[2025-11-26 03:47:52] Set ATHENA_CORE_NUMBER=12
[2025-11-26 03:47:52] Starting ATLAS job with PandaID=6896255475
[2025-11-26 03:47:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:49:03 (13305): wrapper (7.7.26015): starting
09:49:03 (13305): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 09:49:03] Arguments: --nthreads 12
[2025-11-26 09:49:03] Threads: 12
[2025-11-26 09:49:03] This job has been restarted, cleaning up previous attempt
[2025-11-26 09:49:03] Checking for CVMFS
[2025-11-26 09:49:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:49:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:49:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:49:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:49:04] 2.11.2.0 2947 287776 90824 153324 1 56 17157018 20275200 1 130560 1 129652383 99.971 16447010 12801 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 09:49:04] CVMFS is ok
[2025-11-26 09:49:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:49:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:49:04] Further information can be found at the LHC@home message board.
[2025-11-26 09:49:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:49:04] Checking for apptainer binary...
[2025-11-26 09:49:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:49:04] Running /usr/bin/apptainer --version
[2025-11-26 09:49:04] apptainer version 1.3.2-1.el7
[2025-11-26 09:49:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:49:05] c-205-18.aglt2.org
[2025-11-26 09:49:05] apptainer works
[2025-11-26 09:49:05] Set ATHENA_PROC_NUMBER=12
[2025-11-26 09:49:05] Set ATHENA_CORE_NUMBER=12
[2025-11-26 09:49:05] Starting ATLAS job with PandaID=6896255475
[2025-11-26 09:49:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:10:20 (3842): wrapper (7.7.26015): starting
12:10:20 (3842): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 12:10:20] Arguments: --nthreads 12
[2025-11-26 12:10:20] Threads: 12
[2025-11-26 12:10:20] This job has been restarted, cleaning up previous attempt
[2025-11-26 12:10:20] Checking for CVMFS
[2025-11-26 12:10:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:10:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:10:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:10:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:10:20] 2.11.2.0 2947 287917 91340 153328 0 56 17314448 20275201 1 130560 1 129751609 99.971 16452411 12804 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 12:10:20] CVMFS is ok
[2025-11-26 12:10:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 12:10:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 12:10:20] Further information can be found at the LHC@home message board.
[2025-11-26 12:10:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:10:20] Checking for apptainer binary...
[2025-11-26 12:10:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:10:20] Running /usr/bin/apptainer --version
[2025-11-26 12:10:20] apptainer version 1.3.2-1.el7
[2025-11-26 12:10:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:10:22] c-205-18.aglt2.org
[2025-11-26 12:10:22] apptainer works
[2025-11-26 12:10:22] Set ATHENA_PROC_NUMBER=12
[2025-11-26 12:10:22] Set ATHENA_CORE_NUMBER=12
[2025-11-26 12:10:22] Starting ATLAS job with PandaID=6896255475
[2025-11-26 12:10:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:21:24]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:21:24] 2025-11-27 00:20:18,057 | INFO     | PID=7542 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 19:21:24] 2025-11-27 00:20:18,663 | INFO     | monitor loop #1934: job 0:6896255475 is in state 'finished'
[2025-11-26 19:21:24] 2025-11-27 00:20:18,663 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:21:24] 2025-11-27 00:20:19,057 | INFO     | time since job start (25783s) is within the limit (172800.0s)
[2025-11-26 19:21:24] 2025-11-27 00:20:20,179 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 19:21:24] 2025-11-27 00:20:20,183 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-26 19:21:24] 2025-11-27 00:20:20,186 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896255475/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:21:24] 2025-11-27 00:20:20,187 | INFO     | extracted standard info from prmon json
[2025-11-26 19:21:24] 2025-11-27 00:20:20,187 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:21:24] 2025-11-27 00:20:20,187 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:21:24] 2025-11-27 00:20:20,194 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:21:24] 2025-11-27 00:20:20,195 | INFO     | sum of square deviations: 23302968728.874493
[2025-11-26 19:21:24] 2025-11-27 00:20:20,198 | INFO     | sum of deviations: 388481506990.55206
[2025-11-26 19:21:24] 2025-11-27 00:20:20,198 | INFO     | mean x: 1764189906.751185
[2025-11-26 19:21:24] 2025-11-27 00:20:20,199 | INFO     | mean y: 3413994.395734597
[2025-11-26 19:21:24] 2025-11-27 00:20:20,199 | INFO     | intersect: -29407222974.91902
[2025-11-26 19:21:24] 2025-11-27 00:20:20,199 | INFO     | chi2: 5.88762292258079
[2025-11-26 19:21:24] 2025-11-27 00:20:20,200 | INFO     | sum of square deviations: 22484464781.05509
[2025-11-26 19:21:24] 2025-11-27 00:20:20,203 | INFO     | sum of deviations: 533363704806.25433
[2025-11-26 19:21:24] 2025-11-27 00:20:20,204 | INFO     | mean x: 1764189754.2541966
[2025-11-26 19:21:24] 2025-11-27 00:20:20,204 | INFO     | mean y: 3440958.9976019184
[2025-11-26 19:21:24] 2025-11-27 00:20:20,204 | INFO     | intersect: -41845666523.56436
[2025-11-26 19:21:24] 2025-11-27 00:20:20,204 | INFO     | chi2: 3.384857308055898
[2025-11-26 19:21:24] 2025-11-27 00:20:20,204 | INFO     | current chi2=3.384857308055898 (change=42.50893182927934 %)
[2025-11-26 19:21:24] 2025-11-27 00:20:20,205 | INFO     | sum of square deviations: 21685356545.72806
[2025-11-26 19:21:24] 2025-11-27 00:20:20,209 | INFO     | sum of deviations: 599200733372.4854
[2025-11-26 19:21:24] 2025-11-27 00:20:20,209 | INFO     | mean x: 1764189601.7572815
[2025-11-26 19:21:24] 2025-11-27 00:20:20,209 | INFO     | mean y: 3453476.504854369
[2025-11-26 19:21:24] 2025-11-27 00:20:20,209 | INFO     | intersect: -48743898265.30092
[2025-11-26 19:21:24] 2025-11-27 00:20:20,209 | INFO     | chi2: 2.6268396104502063
[2025-11-26 19:21:24] 2025-11-27 00:20:20,210 | INFO     | current chi2=2.6268396104502063 (change=22.394376737879718 %)
[2025-11-26 19:21:24] 2025-11-27 00:20:20,210 | INFO     | right removable region: 411
[2025-11-26 19:21:24] 2025-11-27 00:20:20,210 | INFO     | sum of square deviations: 22484400121.055107
[2025-11-26 19:21:24] 2025-11-27 00:20:20,214 | INFO     | sum of deviations: 245136740803.85602
[2025-11-26 19:21:24] 2025-11-27 00:20:20,214 | INFO     | mean x: 1764190059.2541966
[2025-11-26 19:21:24] 2025-11-27 00:20:20,214 | INFO     | mean y: 3440624.510791367
[2025-11-26 19:21:24] 2025-11-27 00:20:20,214 | INFO     | intersect: -19230686101.385654
[2025-11-26 19:21:24] 2025-11-27 00:20:20,215 | INFO     | chi2: 3.4615933111442656
[2025-11-26 19:21:24] 2025-11-27 00:20:20,215 | INFO     | current chi2=3.4615933111442656 (change=41.20558743889622 %)
[2025-11-26 19:21:24] 2025-11-27 00:20:20,215 | INFO     | sum of square deviations: 21685227225.728077
[2025-11-26 19:21:24] 2025-11-27 00:20:20,219 | INFO     | sum of deviations: 209613464928.12582
[2025-11-26 19:21:24] 2025-11-27 00:20:20,219 | INFO     | mean x: 1764190211.7572815
[2025-11-26 19:21:24] 2025-11-27 00:20:20,219 | INFO     | mean y: 3447402.041262136
[2025-11-26 19:21:24] 2025-11-27 00:20:20,219 | INFO     | intersect: -17049545367.155415
[2025-11-26 19:21:24] 2025-11-27 00:20:20,220 | INFO     | chi2: 3.3942758839414306
[2025-11-26 19:21:24] 2025-11-27 00:20:20,220 | INFO     | current chi2=3.3942758839414306 (change=1.9446948601995793 %)
[2025-11-26 19:21:24] 2025-11-27 00:20:20,220 | INFO     | left removable region: 20
[2025-11-26 19:21:24] 2025-11-27 00:20:20,221 | INFO     | sum of square deviations: 18535420304.803078
[2025-11-26 19:21:24] 2025-11-27 00:20:20,224 | INFO     | sum of deviations: 361626195689.6469
[2025-11-26 19:21:24] 2025-11-27 00:20:20,224 | INFO     | mean x: 1764190181.2685423
[2025-11-26 19:21:24] 2025-11-27 00:20:20,224 | INFO     | mean y: 3499876.117647059
[2025-11-26 19:21:24] 2025-11-27 00:20:20,224 | INFO     | intersect: -34415864413.12119
[2025-11-26 19:21:24] 2025-11-27 00:20:20,225 | INFO     | chi2: 0.058479332392453585
[2025-11-26 19:21:24] 2025-11-27 00:20:20,225 | INFO     | current memory leak: 19.51 B/s (using 391 data points, chi2=0.06)
[2025-11-26 19:21:24] 2025-11-27 00:20:20,225 | INFO     | could have reported an average CPU frequency of 2381 MHz (18 samples)
[2025-11-26 19:21:24] 2025-11-27 00:20:20,225 | INFO     | ..............................
[2025-11-26 19:21:24] 2025-11-27 00:20:20,226 | INFO     | . Timing measurements:
[2025-11-26 19:21:24] 2025-11-27 00:20:20,226 | INFO     | . get job = 0 s
[2025-11-26 19:21:24] 2025-11-27 00:20:20,226 | INFO     | . initial setup = 1 s
[2025-11-26 19:21:24] 2025-11-27 00:20:20,226 | INFO     | . payload setup = 7 s
[2025-11-26 19:21:24] 2025-11-27 00:20:20,226 | INFO     | . stage-in = 0 s
[2025-11-26 19:21:24] 2025-11-27 00:20:20,226 | INFO     | . payload execution = 25745 s
[2025-11-26 19:21:24] 2025-11-27 00:20:20,226 | INFO     | . stage-out = 3 s
[2025-11-26 19:21:24] 2025-11-27 00:20:20,226 | INFO     | . log creation = 0 s
[2025-11-26 19:21:24] 2025-11-27 00:20:20,226 | INFO     | ..............................
[2025-11-26 19:21:24] 2025-11-27 00:20:20,306 | INFO     | 
[2025-11-26 19:21:24] 2025-11-27 00:20:20,307 | INFO     | job summary report
[2025-11-26 19:21:24] 2025-11-27 00:20:20,308 | INFO     | --------------------------------------------------
[2025-11-26 19:21:24] 2025-11-27 00:20:20,308 | INFO     | PanDA job id: 6896255475
[2025-11-26 19:21:24] 2025-11-27 00:20:20,308 | INFO     | task id: 47556149
[2025-11-26 19:21:24] 2025-11-27 00:20:20,309 | INFO     | errors: (none)
[2025-11-26 19:21:24] 2025-11-27 00:20:20,309 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:21:24] 2025-11-27 00:20:20,309 | INFO     | pilot state: finished 
[2025-11-26 19:21:24] 2025-11-27 00:20:20,309 | INFO     | transexitcode: 0
[2025-11-26 19:21:24] 2025-11-27 00:20:20,309 | INFO     | exeerrorcode: 0
[2025-11-26 19:21:24] 2025-11-27 00:20:20,309 | INFO     | exeerrordiag: 
[2025-11-26 19:21:24] 2025-11-27 00:20:20,309 | INFO     | exitcode: 0
[2025-11-26 19:21:24] 2025-11-27 00:20:20,309 | INFO     | exitmsg: OK
[2025-11-26 19:21:24] 2025-11-27 00:20:20,309 | INFO     | cpuconsumptiontime: 294363 s
[2025-11-26 19:21:24] 2025-11-27 00:20:20,309 | INFO     | nevents: 1000
[2025-11-26 19:21:24] 2025-11-27 00:20:20,310 | INFO     | neventsw: 0
[2025-11-26 19:21:24] 2025-11-27 00:20:20,310 | INFO     | pid: 14417
[2025-11-26 19:21:24] 2025-11-27 00:20:20,310 | INFO     | pgrp: 14417
[2025-11-26 19:21:24] 2025-11-27 00:20:20,310 | INFO     | corecount: 12
[2025-11-26 19:21:24] 2025-11-27 00:20:20,310 | INFO     | event service: False
[2025-11-26 19:21:24] 2025-11-27 00:20:20,310 | INFO     | sizes: {0: 2283480, 1: 2284336, 6: 2284598, 12: 2284626, 25756: 2321860, 25761: 2330854, 25762: 2331038, 25767: 2331284}
[2025-11-26 19:21:24] 2025-11-27 00:20:20,310 | INFO     | --------------------------------------------------
[2025-11-26 19:21:24] 2025-11-27 00:20:20,310 | INFO     | 
[2025-11-26 19:21:24] 2025-11-27 00:20:20,311 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 19:21:24] 2025-11-27 00:20:20,333 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,334 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,334 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,334 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,334 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,334 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,335 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,335 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,335 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,335 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,335 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,336 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,336 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,336 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,336 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,336 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,336 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,337 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:21:24] 2025-11-27 00:20:20,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,337 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:21:24] 2025-11-27 00:20:20,337 | INFO     | job 6896255475 has completed (purged errors)
[2025-11-26 19:21:24] 2025-11-27 00:20:20,337 | INFO     | overall cleanup function is called
[2025-11-26 19:21:24] 2025-11-27 00:20:21,353 | INFO     | --- collectZombieJob: --- 10, [14417]
[2025-11-26 19:21:24] 2025-11-27 00:20:21,353 | INFO     | zombie collector waiting for pid 14417
[2025-11-26 19:21:24] 2025-11-27 00:20:21,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:21:24] 2025-11-27 00:20:21,362 | INFO     | collected zombie processes
[2025-11-26 19:21:24] 2025-11-27 00:20:21,362 | INFO     | will attempt to kill all subprocesses of pid=14417
[2025-11-26 19:21:24] 2025-11-27 00:20:21,455 | INFO     | process IDs to be killed: [14417] (in reverse order)
[2025-11-26 19:21:24] 2025-11-27 00:20:21,506 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:21:24] 2025-11-27 00:20:21,507 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:21:24] 2025-11-27 00:20:21,510 | INFO     | did not find any defunct processes belonging to 14417
[2025-11-26 19:21:24] 2025-11-27 00:20:21,513 | INFO     | did not find any defunct processes belonging to 14417
[2025-11-26 19:21:24] 2025-11-27 00:20:21,516 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:21:24] 2025-11-27 00:20:21,516 | INFO     | ready for new job
[2025-11-26 19:21:24] 2025-11-27 00:20:21,516 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:21:24] 2025-11-27 00:20:21,519 | INFO     | ***************************************
[2025-11-26 19:21:24] 2025-11-27 00:20:21,519 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:21:24] 2025-11-27 00:20:21,519 | INFO     | ***************************************
[2025-11-26 19:21:24] 2025-11-27 00:20:21,519 | INFO     | 
[2025-11-26 19:21:24] 2025-11-27 00:20:21,520 | INFO     | architecture information:
[2025-11-26 19:21:24] 2025-11-27 00:20:21,520 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:21:24] 2025-11-27 00:20:21,535 | INFO     | cat /etc/os-release:
[2025-11-26 19:21:24] NAME="CentOS Linux"
[2025-11-26 19:21:24] VERSION="7 (Core)"
[2025-11-26 19:21:24] ID="centos"
[2025-11-26 19:21:24] ID_LIKE="rhel fedora"
[2025-11-26 19:21:24] VERSION_ID="7"
[2025-11-26 19:21:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:21:24] ANSI_COLOR="0;31"
[2025-11-26 19:21:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:21:24] HOME_URL="https://www.centos.org/"
[2025-11-26 19:21:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:21:24] 
[2025-11-26 19:21:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:21:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:21:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:21:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:21:24] 
[2025-11-26 19:21:24] 2025-11-27 00:20:21,536 | INFO     | ***************************************
[2025-11-26 19:21:24] 2025-11-27 00:20:22,039 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 19:21:24] 2025-11-27 00:20:22,056 | INFO     | sufficient remaining disk space (28252831744 B)
[2025-11-26 19:21:24] 2025-11-27 00:20:22,056 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:21:24] 2025-11-27 00:20:22,057 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:21:24] 2025-11-27 00:20:22,057 | INFO     | update_server=False
[2025-11-26 19:21:24] 2025-11-27 00:20:22,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:21:24] 2025-11-27 00:20:22,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:21:24] 2025-11-27 00:20:22,058 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:21:24] 2025-11-27 00:20:22,058 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:21:24] 2025-11-27 00:20:22,171 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:21:24] 2025-11-27 00:20:22,171 | INFO     | aborting loop
[2025-11-26 19:21:24] 2025-11-27 00:20:22,392 | INFO     | all payload control threads have been joined
[2025-11-26 19:21:24] 2025-11-27 00:20:22,782 | INFO     | all data control threads have been joined
[2025-11-26 19:21:24] 2025-11-27 00:20:22,873 | INFO     | all job control threads have been joined
[2025-11-26 19:21:24] 2025-11-27 00:20:23,063 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:23,063 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:23,177 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:23,330 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:23,397 | INFO     | [payload] control thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:23,403 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:23,575 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:23,597 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:23,788 | INFO     | [data] control thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:23,879 | INFO     | [job] control thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:24,064 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:24,289 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:24,301 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:24,396 | INFO     | [job] validate thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:24,626 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:26,064 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:21:24] 2025-11-27 00:20:52,268 | INFO     | PID=7542 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 19:21:24] 2025-11-27 00:20:52,269 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:21:24] 2025-11-27 00:20:52,269 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:21:24] 2025-11-27 00:20:52,269 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:21:24] 2025-11-27 00:21:17,796 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:21:24] 2025-11-27 00:21:18,784 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603359938368)>', '<ExcThread(monitor, started 140602247206656)>']
[2025-11-26 19:21:24] 2025-11-27 00:21:19,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:21:24] 2025-11-27 00:21:19,406 | INFO     | [monitor] control thread has ended
[2025-11-26 19:21:24] 2025-11-27 00:21:23,809 | INFO     | all workflow threads have been joined
[2025-11-26 19:21:24] 2025-11-27 00:21:23,810 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:21:24] 2025-11-27 00:21:23,810 | INFO     | traces error code: 0
[2025-11-26 19:21:24] 2025-11-27 00:21:23,810 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:21:24] 2025-11-27 00:21:23,903 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:21:24] 2025-11-27 00:21:23,907 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:21:24] 2025-11-27 00:21:23,911 [wrapper] pilotpid: 7542
[2025-11-26 19:21:24] 2025-11-27 00:21:23,915 [wrapper] Pilot exit status: 0
[2025-11-26 19:21:24] 2025-11-27 00:21:23,929 [wrapper] pandaids: 6896255475 6896255475 6896255475
[2025-11-26 19:21:24] 2025-11-27 00:21:23,976 [wrapper] cleanup supervisor_pilot 10329 7543
[2025-11-26 19:21:24] 2025-11-27 00:21:23,979 [wrapper] Test setup, not cleaning
[2025-11-26 19:21:24] 2025-11-27 00:21:23,983 [wrapper] apfmon messages muted
[2025-11-26 19:21:24] 2025-11-27 00:21:23,987 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:21:24] 2025-11-27 00:21:23,992 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:21:24]  *** Error codes and diagnostics ***
[2025-11-26 19:21:24]     "exeErrorCode": 0,
[2025-11-26 19:21:24]     "exeErrorDiag": "",
[2025-11-26 19:21:24]     "pilotErrorCode": 0,
[2025-11-26 19:21:24]     "pilotErrorDiag": "",
[2025-11-26 19:21:24]  *** Listing of results directory ***
[2025-11-26 19:21:24] total 1706288
[2025-11-26 19:21:24] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 18:07 pilot3.tar.gz
[2025-11-26 19:21:24] -rwx------ 1 boincer umatlas     36292 Nov 24 18:21 runpilot2-wrapper.sh
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 18:21 queuedata.json
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas       100 Nov 26 03:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:21:24] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 03:47 run_atlas
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas       105 Nov 26 03:47 job.xml
[2025-11-26 19:21:24] -rw-r--r-- 3 boincer umatlas 409926041 Nov 26 03:47 EVNT.47483658._001446.pool.root.1
[2025-11-26 19:21:24] -rw-r--r-- 3 boincer umatlas 409926041 Nov 26 03:47 ATLAS.root_0
[2025-11-26 19:21:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 03:47 start_atlas.sh
[2025-11-26 19:21:24] drwxrwx--x 2 boincer umatlas      4096 Nov 26 03:47 shared
[2025-11-26 19:21:24] -rw-r--r-- 2 boincer umatlas    590102 Nov 26 03:47 input.tar.gz
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas         0 Nov 26 03:47 boinc_lockfile
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas      2782 Nov 26 12:10 pandaJob.out
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas        57 Nov 26 12:10 setup.sh.local
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas    991545 Nov 26 12:10 agis_schedconf.cvmfs.json
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas      5955 Nov 26 19:09 init_data.xml
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas       533 Nov 26 19:09 boinc_task_state.xml
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas 911864354 Nov 26 19:19 HITS.47556149._004321.pool.root.1
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas      1061 Nov 26 19:20 memory_monitor_summary.json
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas   1516240 Nov 26 19:20 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas   2175491 Nov 26 19:20 log.47556149._004321.job.log.tgz.1
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas      8665 Nov 26 19:20 heartbeat.json
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas        96 Nov 26 19:20 pilot_heartbeat.json
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 19:21 boinc_mmap_file
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas        29 Nov 26 19:21 wrapper_checkpoint.txt
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas      4745 Nov 26 19:21 pilotlog.txt
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas   3624098 Nov 26 19:21 log.47556149._004321.job.log.1
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas       353 Nov 26 19:21 output.list
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas       620 Nov 26 19:21 runtime_log
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas   5816320 Nov 26 19:21 result.tar.gz
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas      9430 Nov 26 19:21 runtime_log.err
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas       920 Nov 26 19:21 oqDMDm72uh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmczLKDmyZoSjm.diag
[2025-11-26 19:21:24] -rw-r--r-- 1 boincer umatlas     25742 Nov 26 19:21 stderr.txt
[2025-11-26 19:21:24] HITS file was successfully produced:
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas 911864354 Nov 26 19:19 shared/HITS.pool.root.1
[2025-11-26 19:21:24]  *** Contents of shared directory: ***
[2025-11-26 19:21:24] total 1297096
[2025-11-26 19:21:24] -rw-r--r-- 3 boincer umatlas 409926041 Nov 26 03:47 ATLAS.root_0
[2025-11-26 19:21:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 03:47 start_atlas.sh
[2025-11-26 19:21:24] -rw-r--r-- 2 boincer umatlas    590102 Nov 26 03:47 input.tar.gz
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas 911864354 Nov 26 19:19 HITS.pool.root.1
[2025-11-26 19:21:24] -rw------- 1 boincer umatlas   5816320 Nov 26 19:21 result.tar.gz
19:21:25 (3842): run_atlas exited; CPU time 287560.078346
19:21:25 (3842): called boinc_finish(0)

</stderr_txt>
]]>

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