Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
08:47:56 (1554204): wrapper (7.7.26015): starting
08:47:56 (1554204): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 08:47:56] Arguments: --nthreads 8
[2025-11-26 08:47:56] Threads: 8
[2025-11-26 08:47:56] Checking for CVMFS
[2025-11-26 08:47:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:47:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:47:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:47:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:47:56] 2.13.3.0 1542564 0 35156 153315 3 64 3225394 4096001 195 130560 0 28802 99.942 2846 1773 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2025-11-26 08:47:56] CVMFS is ok
[2025-11-26 08:47:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:47:56] Checking for apptainer binary...
[2025-11-26 08:47:56] apptainer is not installed, using version from CVMFS
[2025-11-26 08:47:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:47:56] senture-c621e-l
[2025-11-26 08:47:56] apptainer works
[2025-11-26 08:47:56] Set ATHENA_PROC_NUMBER=8
[2025-11-26 08:47:56] Set ATHENA_CORE_NUMBER=8
[2025-11-26 08:47:56] Starting ATLAS job with PandaID=6896254695
[2025-11-26 08:47:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:50:58]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:50:58] 2025-11-26 16:50:16,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:50:58] 2025-11-26 16:50:16,368 | INFO     | time since job start (28932s) is within the limit (172800.0s)
[2025-11-26 16:50:58] 2025-11-26 16:50:16,732 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 16:50:58] 2025-11-26 16:50:16,735 | INFO     | found 32 cores (32 cores per socket, 1 socket) HT, CPU MHz: 2600.0039999999976
[2025-11-26 16:50:58] 2025-11-26 16:50:16,741 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6896254695/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:50:58] 2025-11-26 16:50:16,741 | INFO     | extracted standard info from prmon json
[2025-11-26 16:50:58] 2025-11-26 16:50:16,741 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:50:58] 2025-11-26 16:50:16,741 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:50:58] 2025-11-26 16:50:16,745 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:50:58] 2025-11-26 16:50:16,746 | INFO     | sum of square deviations: 33022661619.25749
[2025-11-26 16:50:58] 2025-11-26 16:50:16,748 | INFO     | sum of deviations: 447650741348.4894
[2025-11-26 16:50:58] 2025-11-26 16:50:16,748 | INFO     | mean x: 1764161333.6540084
[2025-11-26 16:50:58] 2025-11-26 16:50:16,748 | INFO     | mean y: 2859447.1371308016
[2025-11-26 16:50:58] 2025-11-26 16:50:16,748 | INFO     | intersect: -23911873349.810375
[2025-11-26 16:50:58] 2025-11-26 16:50:16,749 | INFO     | chi2: 3.2339969121283594
[2025-11-26 16:50:58] 2025-11-26 16:50:16,749 | INFO     | sum of square deviations: 31988645891.637474
[2025-11-26 16:50:58] 2025-11-26 16:50:16,751 | INFO     | sum of deviations: 526911991610.0358
[2025-11-26 16:50:58] 2025-11-26 16:50:16,752 | INFO     | mean x: 1764161181.1556504
[2025-11-26 16:50:58] 2025-11-26 16:50:16,752 | INFO     | mean y: 2871080.684434968
[2025-11-26 16:50:58] 2025-11-26 16:50:16,752 | INFO     | intersect: -29056117056.317116
[2025-11-26 16:50:58] 2025-11-26 16:50:16,752 | INFO     | chi2: 1.8430217609214712
[2025-11-26 16:50:58] 2025-11-26 16:50:16,752 | INFO     | current chi2=1.8430217609214712 (change=43.011022861226515 %)
[2025-11-26 16:50:58] 2025-11-26 16:50:16,752 | INFO     | sum of square deviations: 30976444526.514946
[2025-11-26 16:50:58] 2025-11-26 16:50:16,755 | INFO     | sum of deviations: 516440540117.6381
[2025-11-26 16:50:58] 2025-11-26 16:50:16,755 | INFO     | mean x: 1764161028.6573277
[2025-11-26 16:50:58] 2025-11-26 16:50:16,755 | INFO     | mean y: 2869503.224137931
[2025-11-26 16:50:58] 2025-11-26 16:50:16,755 | INFO     | intersect: -29409294753.21325
[2025-11-26 16:50:58] 2025-11-26 16:50:16,755 | INFO     | chi2: 1.840181367630557
[2025-11-26 16:50:58] 2025-11-26 16:50:16,755 | INFO     | current chi2=1.840181367630557 (change=0.15411610167283638 %)
[2025-11-26 16:50:58] 2025-11-26 16:50:16,755 | INFO     | right removable region: 463
[2025-11-26 16:50:58] 2025-11-26 16:50:16,756 | INFO     | sum of square deviations: 31988601361.63746
[2025-11-26 16:50:58] 2025-11-26 16:50:16,758 | INFO     | sum of deviations: 341932338514.45
[2025-11-26 16:50:58] 2025-11-26 16:50:16,758 | INFO     | mean x: 1764161486.1556504
[2025-11-26 16:50:58] 2025-11-26 16:50:16,758 | INFO     | mean y: 2874983.3773987205
[2025-11-26 16:50:58] 2025-11-26 16:50:16,758 | INFO     | intersect: -18854587887.811127
[2025-11-26 16:50:58] 2025-11-26 16:50:16,758 | INFO     | chi2: 1.5316428207150585
[2025-11-26 16:50:58] 2025-11-26 16:50:16,758 | INFO     | current chi2=1.5316428207150585 (change=52.63932334100303 %)
[2025-11-26 16:50:58] 2025-11-26 16:50:16,759 | INFO     | sum of square deviations: 30976355466.514946
[2025-11-26 16:50:58] 2025-11-26 16:50:16,761 | INFO     | sum of deviations: 313475322457.93933
[2025-11-26 16:50:58] 2025-11-26 16:50:16,761 | INFO     | mean x: 1764161638.6573277
[2025-11-26 16:50:58] 2025-11-26 16:50:16,761 | INFO     | mean y: 2879268.370689655
[2025-11-26 16:50:58] 2025-11-26 16:50:16,761 | INFO     | intersect: -17850129267.247433
[2025-11-26 16:50:58] 2025-11-26 16:50:16,761 | INFO     | chi2: 1.494056535604807
[2025-11-26 16:50:58] 2025-11-26 16:50:16,761 | INFO     | current chi2=1.494056535604807 (change=2.4539850023717733 %)
[2025-11-26 16:50:58] 2025-11-26 16:50:16,761 | INFO     | left removable region: 20
[2025-11-26 16:50:58] 2025-11-26 16:50:16,762 | INFO     | sum of square deviations: 26958012246.298027
[2025-11-26 16:50:58] 2025-11-26 16:50:16,764 | INFO     | sum of deviations: 337250028621.9865
[2025-11-26 16:50:58] 2025-11-26 16:50:16,764 | INFO     | mean x: 1764161608.1625283
[2025-11-26 16:50:58] 2025-11-26 16:50:16,764 | INFO     | mean y: 2897024.083521445
[2025-11-26 16:50:58] 2025-11-26 16:50:16,764 | INFO     | intersect: -22067111232.119602
[2025-11-26 16:50:58] 2025-11-26 16:50:16,764 | INFO     | chi2: 0.06157422182568496
[2025-11-26 16:50:58] 2025-11-26 16:50:16,764 | INFO     | current memory leak: 12.51 B/s (using 443 data points, chi2=0.06)
[2025-11-26 16:50:58] 2025-11-26 16:50:16,765 | INFO     | could have reported an average CPU frequency of 2600 MHz (19 samples)
[2025-11-26 16:50:58] 2025-11-26 16:50:16,765 | INFO     | ..............................
[2025-11-26 16:50:58] 2025-11-26 16:50:16,765 | INFO     | . Timing measurements:
[2025-11-26 16:50:58] 2025-11-26 16:50:16,765 | INFO     | . get job = 0 s
[2025-11-26 16:50:58] 2025-11-26 16:50:16,765 | INFO     | . initial setup = 1 s
[2025-11-26 16:50:58] 2025-11-26 16:50:16,765 | INFO     | . payload setup = 4 s
[2025-11-26 16:50:58] 2025-11-26 16:50:16,765 | INFO     | . stage-in = 0 s
[2025-11-26 16:50:58] 2025-11-26 16:50:16,765 | INFO     | . payload execution = 28904 s
[2025-11-26 16:50:58] 2025-11-26 16:50:16,765 | INFO     | . stage-out = 2 s
[2025-11-26 16:50:58] 2025-11-26 16:50:16,765 | INFO     | . log creation = 0 s
[2025-11-26 16:50:58] 2025-11-26 16:50:16,765 | INFO     | ..............................
[2025-11-26 16:50:58] 2025-11-26 16:50:17,063 | INFO     | 
[2025-11-26 16:50:58] 2025-11-26 16:50:17,063 | INFO     | job summary report
[2025-11-26 16:50:58] 2025-11-26 16:50:17,063 | INFO     | --------------------------------------------------
[2025-11-26 16:50:58] 2025-11-26 16:50:17,063 | INFO     | PanDA job id: 6896254695
[2025-11-26 16:50:58] 2025-11-26 16:50:17,063 | INFO     | task id: 47556149
[2025-11-26 16:50:58] 2025-11-26 16:50:17,063 | INFO     | errors: (none)
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | pilot state: finished 
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | transexitcode: 0
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | exeerrorcode: 0
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | exeerrordiag: 
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | exitcode: 0
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | exitmsg: OK
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | cpuconsumptiontime: 226593 s
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | nevents: 1000
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | neventsw: 0
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | pid: 1605879
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | pgrp: 1605879
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | corecount: 8
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | event service: False
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | sizes: {0: 2284271, 3: 2284533, 10: 2284561, 28912: 2322443, 28914: 2331451, 28915: 2331507, 28918: 2331881}
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | --------------------------------------------------
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | 
[2025-11-26 16:50:58] 2025-11-26 16:50:17,064 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,085 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,086 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,086 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,086 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:50:58] 2025-11-26 16:50:17,086 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,086 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:50:58] 2025-11-26 16:50:17,086 | INFO     | job 6896254695 has completed (purged errors)
[2025-11-26 16:50:58] 2025-11-26 16:50:17,086 | INFO     | overall cleanup function is called
[2025-11-26 16:50:58] 2025-11-26 16:50:18,098 | INFO     | --- collectZombieJob: --- 10, [1605879]
[2025-11-26 16:50:58] 2025-11-26 16:50:18,099 | INFO     | zombie collector waiting for pid 1605879
[2025-11-26 16:50:58] 2025-11-26 16:50:18,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:50:58] 2025-11-26 16:50:18,099 | INFO     | collected zombie processes
[2025-11-26 16:50:58] 2025-11-26 16:50:18,099 | INFO     | will attempt to kill all subprocesses of pid=1605879
[2025-11-26 16:50:58] 2025-11-26 16:50:18,208 | INFO     | process IDs to be killed: [1605879] (in reverse order)
[2025-11-26 16:50:58] 2025-11-26 16:50:18,262 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:50:58] 2025-11-26 16:50:18,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:50:58] 2025-11-26 16:50:18,266 | INFO     | did not find any defunct processes belonging to 1605879
[2025-11-26 16:50:58] 2025-11-26 16:50:18,269 | INFO     | did not find any defunct processes belonging to 1605879
[2025-11-26 16:50:58] 2025-11-26 16:50:18,273 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:50:58] 2025-11-26 16:50:18,273 | INFO     | ready for new job
[2025-11-26 16:50:58] 2025-11-26 16:50:18,273 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:50:58] 2025-11-26 16:50:18,275 | INFO     | ***************************************
[2025-11-26 16:50:58] 2025-11-26 16:50:18,276 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:50:58] 2025-11-26 16:50:18,276 | INFO     | ***************************************
[2025-11-26 16:50:58] 2025-11-26 16:50:18,276 | INFO     | 
[2025-11-26 16:50:58] 2025-11-26 16:50:18,278 | INFO     | pilot is running in a VM
[2025-11-26 16:50:58] 2025-11-26 16:50:18,278 | INFO     | architecture information:
[2025-11-26 16:50:58] 2025-11-26 16:50:18,278 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:50:58] 2025-11-26 16:50:18,291 | INFO     | cat /etc/os-release:
[2025-11-26 16:50:58] NAME="CentOS Linux"
[2025-11-26 16:50:58] VERSION="7 (Core)"
[2025-11-26 16:50:58] ID="centos"
[2025-11-26 16:50:58] ID_LIKE="rhel fedora"
[2025-11-26 16:50:58] VERSION_ID="7"
[2025-11-26 16:50:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:50:58] ANSI_COLOR="0;31"
[2025-11-26 16:50:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:50:58] HOME_URL="https://www.centos.org/"
[2025-11-26 16:50:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:50:58] 
[2025-11-26 16:50:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:50:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:50:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:50:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:50:58] 
[2025-11-26 16:50:58] 2025-11-26 16:50:18,291 | INFO     | ***************************************
[2025-11-26 16:50:58] 2025-11-26 16:50:18,794 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-26 16:50:58] 2025-11-26 16:50:18,813 | INFO     | sufficient remaining disk space (113774690304 B)
[2025-11-26 16:50:58] 2025-11-26 16:50:18,814 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:50:58] 2025-11-26 16:50:18,814 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:50:58] 2025-11-26 16:50:18,814 | INFO     | update_server=False
[2025-11-26 16:50:58] 2025-11-26 16:50:18,814 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:50:58] 2025-11-26 16:50:18,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:50:58] 2025-11-26 16:50:18,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:50:58] 2025-11-26 16:50:18,862 | INFO     | all payload control threads have been joined
[2025-11-26 16:50:58] 2025-11-26 16:50:19,005 | INFO     | all job control threads have been joined
[2025-11-26 16:50:58] 2025-11-26 16:50:19,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:50:58] 2025-11-26 16:50:19,578 | INFO     | all data control threads have been joined
[2025-11-26 16:50:58] 2025-11-26 16:50:19,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:50:58] 2025-11-26 16:50:19,629 | INFO     | aborting loop
[2025-11-26 16:50:58] 2025-11-26 16:50:19,820 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:19,820 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:19,867 | INFO     | [payload] control thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:19,928 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:20,009 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:20,010 | INFO     | [job] control thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:20,435 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:20,524 | INFO     | [job] validate thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:20,584 | INFO     | [data] control thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:20,634 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:20,638 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:20,810 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:20,820 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:21,126 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:23,443 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:29,287 | INFO     | job.realtimelogging is not enabled
[2025-11-26 16:50:58] 2025-11-26 16:50:30,292 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:50:58] 2025-11-26 16:50:49,626 | INFO     | PID=1565369 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:50:58] 2025-11-26 16:50:49,627 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:50:58] 2025-11-26 16:50:49,627 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:50:58] 2025-11-26 16:50:49,627 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:50:58] 2025-11-26 16:50:51,858 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:50:58] 2025-11-26 16:50:53,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135576506701632)>', '<ExcThread(monitor, started 135576095266560)>']
[2025-11-26 16:50:58] 2025-11-26 16:50:53,648 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:50:58] 2025-11-26 16:50:53,648 | INFO     | [monitor] control thread has ended
[2025-11-26 16:50:58] 2025-11-26 16:50:58,672 | INFO     | all workflow threads have been joined
[2025-11-26 16:50:58] 2025-11-26 16:50:58,673 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:50:58] 2025-11-26 16:50:58,673 | INFO     | traces error code: 0
[2025-11-26 16:50:58] 2025-11-26 16:50:58,673 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:50:58] 2025-11-26 16:50:58,762 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:50:58] 2025-11-26 16:50:58,764 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:50:58] 2025-11-26 16:50:58,766 [wrapper] pilotpid: 1565369
[2025-11-26 16:50:58] 2025-11-26 16:50:58,769 [wrapper] Pilot exit status: 0
[2025-11-26 16:50:58] 2025-11-26 16:50:58,776 [wrapper] pandaids: 6896254695
[2025-11-26 16:50:58] 2025-11-26 16:50:58,812 [wrapper] cleanup supervisor_pilot 1991002 1565370
[2025-11-26 16:50:58] 2025-11-26 16:50:58,815 [wrapper] Test setup, not cleaning
[2025-11-26 16:50:58] 2025-11-26 16:50:58,818 [wrapper] apfmon messages muted
[2025-11-26 16:50:58] 2025-11-26 16:50:58,821 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:50:58] 2025-11-26 16:50:58,824 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:50:58]  *** Error codes and diagnostics ***
[2025-11-26 16:50:58]     "exeErrorCode": 0,
[2025-11-26 16:50:58]     "exeErrorDiag": "",
[2025-11-26 16:50:58]     "pilotErrorCode": 0,
[2025-11-26 16:50:58]     "pilotErrorDiag": "",
[2025-11-26 16:50:58]  *** Listing of results directory ***
[2025-11-26 16:50:58] total 1322968
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc      5112 Nov 24 22:01 queuedata.json
[2025-11-26 16:50:58] -rwx------ 1 boinc boinc     36292 Nov 24 22:04 runpilot2-wrapper.sh
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc    576529 Nov 24 22:04 pilot3.tar.gz
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc       100 Nov 26 08:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:50:58] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 08:47 run_atlas
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc       105 Nov 26 08:47 job.xml
[2025-11-26 16:50:58] -rw-r--r-- 2 boinc boinc 412261343 Nov 26 08:47 EVNT.47483658._001427.pool.root.1
[2025-11-26 16:50:58] drwxrwx--x 2 boinc boinc      4096 Nov 26 08:47 shared
[2025-11-26 16:50:58] -rw-r--r-- 2 boinc boinc    590101 Nov 26 08:47 input.tar.gz
[2025-11-26 16:50:58] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:47 start_atlas.sh
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:47 boinc_setup_complete
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc      6663 Nov 26 08:47 init_data.xml
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:47 boinc_lockfile
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc      2785 Nov 26 08:47 pandaJob.out
[2025-11-26 16:50:58] -rw------- 1 boinc boinc        50 Nov 26 08:47 setup.sh.local
[2025-11-26 16:50:58] -rw------- 1 boinc boinc    991877 Nov 26 08:48 agis_schedconf.cvmfs.json
[2025-11-26 16:50:58] drwx------ 5 boinc boinc      4096 Nov 26 08:48 pilot3
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc       532 Nov 26 16:45 boinc_task_state.xml
[2025-11-26 16:50:58] -rw------- 1 boinc boinc 926919328 Nov 26 16:49 HITS.47556149._004139.pool.root.1
[2025-11-26 16:50:58] -rw------- 1 boinc boinc      1040 Nov 26 16:50 memory_monitor_summary.json
[2025-11-26 16:50:58] -rw------- 1 boinc boinc   1516240 Nov 26 16:50 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:50:58] -rw------- 1 boinc boinc   1750363 Nov 26 16:50 log.47556149._004139.job.log.tgz.1
[2025-11-26 16:50:58] -rw------- 1 boinc boinc      8596 Nov 26 16:50 heartbeat.json
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc      8192 Nov 26 16:50 boinc_mmap_file
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc        29 Nov 26 16:50 wrapper_checkpoint.txt
[2025-11-26 16:50:58] -rw------- 1 boinc boinc        95 Nov 26 16:50 pilot_heartbeat.json
[2025-11-26 16:50:58] -rw------- 1 boinc boinc      4890 Nov 26 16:50 pilotlog.txt
[2025-11-26 16:50:58] -rw------- 1 boinc boinc   4057731 Nov 26 16:50 log.47556149._004139.job.log.1
[2025-11-26 16:50:58] -rw------- 1 boinc boinc       353 Nov 26 16:50 output.list
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc       620 Nov 26 16:50 runtime_log
[2025-11-26 16:50:58] -rw------- 1 boinc boinc   5826560 Nov 26 16:50 result.tar.gz
[2025-11-26 16:50:58] -rw------- 1 boinc boinc       657 Nov 26 16:50 yWhKDmFrth8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1wLKDmCazCcn.diag
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc      9425 Nov 26 16:50 runtime_log.err
[2025-11-26 16:50:58] -rw-r--r-- 1 boinc boinc     21017 Nov 26 16:50 stderr.txt
[2025-11-26 16:50:58] HITS file was successfully produced:
[2025-11-26 16:50:58] -rw------- 1 boinc boinc 926919328 Nov 26 16:49 shared/HITS.pool.root.1
[2025-11-26 16:50:58]  *** Contents of shared directory: ***
[2025-11-26 16:50:58] total 1314092
[2025-11-26 16:50:58] -rw-r--r-- 2 boinc boinc 412261343 Nov 26 08:47 ATLAS.root_0
[2025-11-26 16:50:58] -rw-r--r-- 2 boinc boinc    590101 Nov 26 08:47 input.tar.gz
[2025-11-26 16:50:58] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:47 start_atlas.sh
[2025-11-26 16:50:58] -rw------- 1 boinc boinc 926919328 Nov 26 16:49 HITS.pool.root.1
[2025-11-26 16:50:58] -rw------- 1 boinc boinc   5826560 Nov 26 16:50 result.tar.gz
16:51:00 (1554204): run_atlas exited; CPU time 227107.792412
16:51:00 (1554204): called boinc_finish(0)

</stderr_txt>
]]>

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