Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:08:31 (1448827): wrapper (7.7.26015): starting
19:08:31 (1448827): wrapper: running run_atlas (--nthreads 3)
[2025-11-29 19:08:31] Arguments: --nthreads 3
[2025-11-29 19:08:31] Threads: 3
[2025-11-29 19:08:31] Checking for CVMFS
[2025-11-29 19:08:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 19:09:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 19:09:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 19:09:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 19:09:27] 2.13.3.0 1449046 0 31204 153439 3 1 41855452 52428800 0 130560 0 0 0.000 1293 62 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-29 19:09:27] CVMFS is ok
[2025-11-29 19:09:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 19:09:27] Checking for apptainer binary...
[2025-11-29 19:09:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 19:09:27] Running /usr/bin/apptainer --version
[2025-11-29 19:09:27] apptainer version 1.4.4-1.el9
[2025-11-29 19:09:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 19:09:27] testio004
[2025-11-29 19:09:27] apptainer works
[2025-11-29 19:09:27] Set ATHENA_PROC_NUMBER=3
[2025-11-29 19:09:27] Set ATHENA_CORE_NUMBER=3
[2025-11-29 19:09:27] Starting ATLAS job with PandaID=6896922360
[2025-11-29 19:09:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 07:07:44]  *** The last 200 lines of the pilot log: ***
[2025-11-30 07:07:44] 2025-11-29 22:06:55,465 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 07:07:44] 2025-11-29 22:06:57,438 | INFO     | time since job start (42934s) is within the limit (172800.0s)
[2025-11-30 07:07:44] 2025-11-29 22:06:57,967 | INFO     | monitor loop #3104: job 0:6896922360 is in state 'finished'
[2025-11-30 07:07:44] 2025-11-29 22:06:57,967 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 07:07:44] 2025-11-29 22:06:58,815 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 07:07:44] 2025-11-29 22:06:58,816 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3652.0922499999997
[2025-11-30 07:07:44] 2025-11-29 22:06:58,817 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6896922360/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 07:07:44] 2025-11-29 22:06:58,817 | INFO     | extracted standard info from prmon json
[2025-11-30 07:07:44] 2025-11-29 22:06:58,817 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 07:07:44] 2025-11-29 22:06:58,817 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 07:07:44] 2025-11-29 22:06:58,822 | INFO     | fitting pss+swap vs Time
[2025-11-30 07:07:44] 2025-11-29 22:06:58,822 | INFO     | sum of square deviations: 107731627421.85782
[2025-11-30 07:07:44] 2025-11-29 22:06:58,827 | INFO     | sum of deviations: 265729667748.90472
[2025-11-30 07:07:44] 2025-11-29 22:06:58,827 | INFO     | mean x: 1764432518.0142248
[2025-11-30 07:07:44] 2025-11-29 22:06:58,827 | INFO     | mean y: 2197226.109530583
[2025-11-30 07:07:44] 2025-11-29 22:06:58,827 | INFO     | intersect: -4349932951.422301
[2025-11-30 07:07:44] 2025-11-29 22:06:58,827 | INFO     | chi2: 6.90459536174712
[2025-11-30 07:07:44] 2025-11-29 22:06:58,828 | INFO     | sum of square deviations: 105449252794.3566
[2025-11-30 07:07:44] 2025-11-29 22:06:58,833 | INFO     | sum of deviations: 435930622345.6229
[2025-11-30 07:07:44] 2025-11-29 22:06:58,833 | INFO     | mean x: 1764432365.5143266
[2025-11-30 07:07:44] 2025-11-29 22:06:58,833 | INFO     | mean y: 2208596.187679083
[2025-11-30 07:07:44] 2025-11-29 22:06:58,833 | INFO     | intersect: -7292011882.410006
[2025-11-30 07:07:44] 2025-11-29 22:06:58,833 | INFO     | chi2: 4.164306863163032
[2025-11-30 07:07:44] 2025-11-29 22:06:58,833 | INFO     | current chi2=4.164306863163032 (change=39.6878941489584 %)
[2025-11-30 07:07:44] 2025-11-29 22:06:58,834 | INFO     | sum of square deviations: 103199343891.8561
[2025-11-30 07:07:44] 2025-11-29 22:06:58,838 | INFO     | sum of deviations: 478131176314.822
[2025-11-30 07:07:44] 2025-11-29 22:06:58,839 | INFO     | mean x: 1764432213.01443
[2025-11-30 07:07:44] 2025-11-29 22:06:58,839 | INFO     | mean y: 2211440.917748918
[2025-11-30 07:07:44] 2025-11-29 22:06:58,839 | INFO     | intersect: -8172550313.579496
[2025-11-30 07:07:44] 2025-11-29 22:06:58,839 | INFO     | chi2: 3.5825763601071023
[2025-11-30 07:07:44] 2025-11-29 22:06:58,839 | INFO     | current chi2=3.5825763601071023 (change=13.969443707471434 %)
[2025-11-30 07:07:44] 2025-11-29 22:06:58,839 | INFO     | right removable region: 692
[2025-11-30 07:07:44] 2025-11-29 22:06:58,839 | INFO     | sum of square deviations: 105449246694.35658
[2025-11-30 07:07:44] 2025-11-29 22:06:58,844 | INFO     | sum of deviations: 107982798985.60355
[2025-11-30 07:07:44] 2025-11-29 22:06:58,844 | INFO     | mean x: 1764432670.5143266
[2025-11-30 07:07:44] 2025-11-29 22:06:58,844 | INFO     | mean y: 2207757.8896848136
[2025-11-30 07:07:44] 2025-11-29 22:06:58,844 | INFO     | intersect: -1804617652.0255177
[2025-11-30 07:07:44] 2025-11-29 22:06:58,845 | INFO     | chi2: 4.532684354527719
[2025-11-30 07:07:44] 2025-11-29 22:06:58,845 | INFO     | current chi2=4.532684354527719 (change=34.35264317385312 %)
[2025-11-30 07:07:44] 2025-11-29 22:06:58,845 | INFO     | sum of square deviations: 103199331691.85611
[2025-11-30 07:07:44] 2025-11-29 22:06:58,850 | INFO     | sum of deviations: -530448184.6119156
[2025-11-30 07:07:44] 2025-11-29 22:06:58,850 | INFO     | mean x: 1764432823.01443
[2025-11-30 07:07:44] 2025-11-29 22:06:58,850 | INFO     | mean y: 2215107.2611832614
[2025-11-30 07:07:44] 2025-11-29 22:06:58,850 | INFO     | intersect: 11284353.858945297
[2025-11-30 07:07:44] 2025-11-29 22:06:58,851 | INFO     | chi2: 3.45310411457913
[2025-11-30 07:07:44] 2025-11-29 22:06:58,851 | INFO     | current chi2=3.45310411457913 (change=23.817679668565304 %)
[2025-11-30 07:07:44] 2025-11-29 22:06:58,851 | INFO     | left removable region: 20
[2025-11-30 07:07:44] 2025-11-29 22:06:58,851 | INFO     | sum of square deviations: 94098979347.85106
[2025-11-30 07:07:44] 2025-11-29 22:06:58,856 | INFO     | sum of deviations: 201477785705.09268
[2025-11-30 07:07:44] 2025-11-29 22:06:58,856 | INFO     | mean x: 1764432792.514881
[2025-11-30 07:07:44] 2025-11-29 22:06:58,856 | INFO     | mean y: 2230472.3407738097
[2025-11-30 07:07:44] 2025-11-29 22:06:58,856 | INFO     | intersect: -3775642725.9137387
[2025-11-30 07:07:44] 2025-11-29 22:06:58,856 | INFO     | chi2: 0.08753694103780178
[2025-11-30 07:07:44] 2025-11-29 22:06:58,856 | INFO     | current memory leak: 2.14 B/s (using 672 data points, chi2=0.09)
[2025-11-30 07:07:44] 2025-11-29 22:06:58,856 | INFO     | could have reported an average CPU frequency of 3604 MHz (26 samples)
[2025-11-30 07:07:44] 2025-11-29 22:06:58,856 | INFO     | ..............................
[2025-11-30 07:07:44] 2025-11-29 22:06:58,856 | INFO     | . Timing measurements:
[2025-11-30 07:07:44] 2025-11-29 22:06:58,857 | INFO     | . get job = 0 s
[2025-11-30 07:07:44] 2025-11-29 22:06:58,857 | INFO     | . initial setup = 6 s
[2025-11-30 07:07:44] 2025-11-29 22:06:58,857 | INFO     | . payload setup = 6 s
[2025-11-30 07:07:44] 2025-11-29 22:06:58,857 | INFO     | . stage-in = 0 s
[2025-11-30 07:07:44] 2025-11-29 22:06:58,857 | INFO     | . payload execution = 42828 s
[2025-11-30 07:07:44] 2025-11-29 22:06:58,857 | INFO     | . stage-out = 5 s
[2025-11-30 07:07:44] 2025-11-29 22:06:58,857 | INFO     | . log creation = 0 s
[2025-11-30 07:07:44] 2025-11-29 22:06:58,857 | INFO     | ..............................
[2025-11-30 07:07:44] 2025-11-29 22:06:58,893 | INFO     | 
[2025-11-30 07:07:44] 2025-11-29 22:06:58,893 | INFO     | job summary report
[2025-11-30 07:07:44] 2025-11-29 22:06:58,893 | INFO     | --------------------------------------------------
[2025-11-30 07:07:44] 2025-11-29 22:06:58,893 | INFO     | PanDA job id: 6896922360
[2025-11-30 07:07:44] 2025-11-29 22:06:58,893 | INFO     | task id: 47556173
[2025-11-30 07:07:44] 2025-11-29 22:06:58,893 | INFO     | errors: (none)
[2025-11-30 07:07:44] 2025-11-29 22:06:58,893 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 07:07:44] 2025-11-29 22:06:58,893 | INFO     | pilot state: finished 
[2025-11-30 07:07:44] 2025-11-29 22:06:58,893 | INFO     | transexitcode: 0
[2025-11-30 07:07:44] 2025-11-29 22:06:58,893 | INFO     | exeerrorcode: 0
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | exeerrordiag: 
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | exitcode: 0
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | exitmsg: OK
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | cpuconsumptiontime: 115831 s
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | nevents: 1000
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | neventsw: 0
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | pid: 1459651
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | pgrp: 1459651
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | corecount: 3
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | event service: False
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | sizes: {0: 2284313, 3: 2284575, 11: 2284603, 42839: 2329661, 42846: 2338655, 42847: 2338711, 42922: 2339085}
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | --------------------------------------------------
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | 
[2025-11-30 07:07:44] 2025-11-29 22:06:58,894 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-30 07:07:44] 2025-11-29 22:06:58,904 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 07:07:44] 2025-11-29 22:06:58,905 | INFO     | job 6896922360 has completed (purged errors)
[2025-11-30 07:07:44] 2025-11-29 22:06:58,906 | INFO     | overall cleanup function is called
[2025-11-30 07:07:44] 2025-11-29 22:06:59,912 | INFO     | --- collectZombieJob: --- 10, [1459651]
[2025-11-30 07:07:44] 2025-11-29 22:06:59,912 | INFO     | zombie collector waiting for pid 1459651
[2025-11-30 07:07:44] 2025-11-29 22:06:59,913 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 07:07:44] 2025-11-29 22:06:59,913 | INFO     | collected zombie processes
[2025-11-30 07:07:44] 2025-11-29 22:06:59,913 | INFO     | will attempt to kill all subprocesses of pid=1459651
[2025-11-30 07:07:44] 2025-11-29 22:06:59,945 | INFO     | process IDs to be killed: [1459651] (in reverse order)
[2025-11-30 07:07:44] 2025-11-29 22:06:59,965 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 07:07:44] 2025-11-29 22:06:59,966 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 07:07:44] 2025-11-29 22:06:59,967 | INFO     | did not find any defunct processes belonging to 1459651
[2025-11-30 07:07:44] 2025-11-29 22:06:59,968 | INFO     | did not find any defunct processes belonging to 1459651
[2025-11-30 07:07:44] 2025-11-29 22:06:59,969 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 07:07:44] 2025-11-29 22:06:59,969 | INFO     | ready for new job
[2025-11-30 07:07:44] 2025-11-29 22:06:59,969 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 07:07:44] 2025-11-29 22:06:59,970 | INFO     | ***************************************
[2025-11-30 07:07:44] 2025-11-29 22:06:59,970 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 07:07:44] 2025-11-29 22:06:59,970 | INFO     | ***************************************
[2025-11-30 07:07:44] 2025-11-29 22:06:59,970 | INFO     | 
[2025-11-30 07:07:44] 2025-11-29 22:06:59,971 | INFO     | architecture information:
[2025-11-30 07:07:44] 2025-11-29 22:06:59,971 | INFO     | executing command: cat /etc/os-release
[2025-11-30 07:07:44] 2025-11-29 22:06:59,979 | INFO     | cat /etc/os-release:
[2025-11-30 07:07:44] NAME="CentOS Linux"
[2025-11-30 07:07:44] VERSION="7 (Core)"
[2025-11-30 07:07:44] ID="centos"
[2025-11-30 07:07:44] ID_LIKE="rhel fedora"
[2025-11-30 07:07:44] VERSION_ID="7"
[2025-11-30 07:07:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 07:07:44] ANSI_COLOR="0;31"
[2025-11-30 07:07:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 07:07:44] HOME_URL="https://www.centos.org/"
[2025-11-30 07:07:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 07:07:44] 
[2025-11-30 07:07:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 07:07:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 07:07:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 07:07:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 07:07:44] 
[2025-11-30 07:07:44] 2025-11-29 22:06:59,979 | INFO     | ***************************************
[2025-11-30 07:07:44] 2025-11-29 22:07:00,481 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-30 07:07:44] 2025-11-29 22:07:00,490 | INFO     | sufficient remaining disk space (322402516992 B)
[2025-11-30 07:07:44] 2025-11-29 22:07:00,490 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 07:07:44] 2025-11-29 22:07:00,490 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 07:07:44] 2025-11-29 22:07:00,490 | INFO     | update_server=False
[2025-11-30 07:07:44] 2025-11-29 22:07:00,490 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 07:07:44] 2025-11-29 22:07:00,491 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 07:07:44] 2025-11-29 22:07:00,491 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 07:07:44] 2025-11-29 22:07:01,389 | INFO     | all data control threads have been joined
[2025-11-30 07:07:44] 2025-11-29 22:07:01,475 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 07:07:44] 2025-11-29 22:07:01,475 | INFO     | aborting loop
[2025-11-30 07:07:44] 2025-11-29 22:07:01,482 | INFO     | all job control threads have been joined
[2025-11-30 07:07:44] 2025-11-29 22:07:01,495 | INFO     | [job] queue monitor thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:01,496 | INFO     | [job] retrieve thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:01,612 | INFO     | all payload control threads have been joined
[2025-11-30 07:07:44] 2025-11-29 22:07:01,653 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 07:07:44] 2025-11-29 22:07:01,673 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:01,745 | INFO     | [payload] failed_post thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:01,830 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:01,831 | INFO     | [job] validate thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:01,832 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:02,391 | INFO     | [data] control thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:02,480 | INFO     | [job] job monitor thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:02,487 | INFO     | [job] control thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:02,494 | INFO     | [data] copytool_out thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:02,524 | INFO     | [data] copytool_in thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:02,556 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:02,617 | INFO     | [payload] control thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:02,643 | INFO     | [payload] validate_post thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:05,654 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 07:07:44] 2025-11-29 22:07:30,538 | INFO     | PID=1453110 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 07:07:44] 2025-11-29 22:07:30,538 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 07:07:44] 2025-11-29 22:07:30,538 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 07:07:44] 2025-11-29 22:07:30,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 07:07:44] 2025-11-29 22:07:37,091 | INFO     | [monitor] cgroup control has ended
[2025-11-30 07:07:44] 2025-11-29 22:07:39,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140037203150656)>', '<ExcThread(monitor, started 140036712417024)>']
[2025-11-30 07:07:44] 2025-11-29 22:07:39,583 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 07:07:44] 2025-11-29 22:07:39,583 | INFO     | [monitor] control thread has ended
[2025-11-30 07:07:44] 2025-11-29 22:07:44,078 | INFO     | all workflow threads have been joined
[2025-11-30 07:07:44] 2025-11-29 22:07:44,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 07:07:44] 2025-11-29 22:07:44,078 | INFO     | traces error code: 0
[2025-11-30 07:07:44] 2025-11-29 22:07:44,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 07:07:44] 2025-11-29 22:07:44,139 [wrapper] ==== pilot stdout END ====
[2025-11-30 07:07:44] 2025-11-29 22:07:44,140 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 07:07:44] 2025-11-29 22:07:44,142 [wrapper] pilotpid: 1453110
[2025-11-30 07:07:44] 2025-11-29 22:07:44,144 [wrapper] Pilot exit status: 0
[2025-11-30 07:07:44] 2025-11-29 22:07:44,149 [wrapper] pandaids: 6896922360
[2025-11-30 07:07:44] 2025-11-29 22:07:44,161 [wrapper] cleanup supervisor_pilot 1525867 1453111
[2025-11-30 07:07:44] 2025-11-29 22:07:44,163 [wrapper] Test setup, not cleaning
[2025-11-30 07:07:44] 2025-11-29 22:07:44,164 [wrapper] apfmon messages muted
[2025-11-30 07:07:44] 2025-11-29 22:07:44,166 [wrapper] ==== wrapper stdout END ====
[2025-11-30 07:07:44] 2025-11-29 22:07:44,167 [wrapper] ==== wrapper stderr END ====
[2025-11-30 07:07:44]  *** Error codes and diagnostics ***
[2025-11-30 07:07:44]     "exeErrorCode": 0,
[2025-11-30 07:07:44]     "exeErrorDiag": "",
[2025-11-30 07:07:44]     "pilotErrorCode": 0,
[2025-11-30 07:07:44]     "pilotErrorDiag": "",
[2025-11-30 07:07:44]  *** Listing of results directory ***
[2025-11-30 07:07:44] total 1316788
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc    598293 Nov  6 17:41 pilot3.tar.gz
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc      5112 Nov 25 20:09 queuedata.json
[2025-11-30 07:07:44] -rwx------. 1 boinc boinc     36292 Nov 25 20:10 runpilot2-wrapper.sh
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc       100 Nov 29 19:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 07:07:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 19:08 run_atlas
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc       105 Nov 29 19:08 job.xml
[2025-11-30 07:07:44] -rw-r--r--. 2 boinc boinc 411319246 Nov 29 19:08 EVNT.47483658._003074.pool.root.1
[2025-11-30 07:07:44] -rw-r--r--. 2 boinc boinc     15847 Nov 29 19:08 start_atlas.sh
[2025-11-30 07:07:44] drwxrwx--x. 2 boinc boinc        68 Nov 29 19:08 shared
[2025-11-30 07:07:44] -rw-r--r--. 2 boinc boinc    611279 Nov 29 19:08 input.tar.gz
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc         0 Nov 29 19:08 boinc_lockfile
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc      2785 Nov 29 19:09 pandaJob.out
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc    991834 Nov 29 19:11 agis_schedconf.cvmfs.json
[2025-11-30 07:07:44] drwx------. 7 boinc boinc      4096 Nov 29 19:11 pilot3
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc      9325 Nov 30 06:56 init_data.xml
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc       532 Nov 30 06:57 boinc_task_state.xml
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc 918758274 Nov 30 07:05 HITS.47556173._000562.pool.root.1
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc      1032 Nov 30 07:05 memory_monitor_summary.json
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc   1516240 Nov 30 07:05 agis_ddmendpoints.agis.ALL.json
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc   1330964 Nov 30 07:05 log.47556173._000562.job.log.tgz.1
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc        95 Nov 30 07:06 pilot_heartbeat.json
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc      8601 Nov 30 07:06 heartbeat.json
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc      8192 Nov 30 07:07 boinc_mmap_file
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc        29 Nov 30 07:07 wrapper_checkpoint.txt
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc      4749 Nov 30 07:07 pilotlog.txt
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc   5848355 Nov 30 07:07 log.47556173._000562.job.log.1
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc       353 Nov 30 07:07 output.list
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc       620 Nov 30 07:07 runtime_log
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc   7198720 Nov 30 07:07 result.tar.gz
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc      8776 Nov 30 07:07 runtime_log.err
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc       653 Nov 30 07:07 R4xKDmX75h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtQJKDmRTIITm.diag
[2025-11-30 07:07:44] -rw-r--r--. 1 boinc boinc     21022 Nov 30 07:07 stderr.txt
[2025-11-30 07:07:44] HITS file was successfully produced:
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc 918758274 Nov 30 07:05 shared/HITS.pool.root.1
[2025-11-30 07:07:44]  *** Contents of shared directory: ***
[2025-11-30 07:07:44] total 1306556
[2025-11-30 07:07:44] -rw-r--r--. 2 boinc boinc 411319246 Nov 29 19:08 ATLAS.root_0
[2025-11-30 07:07:44] -rw-r--r--. 2 boinc boinc     15847 Nov 29 19:08 start_atlas.sh
[2025-11-30 07:07:44] -rw-r--r--. 2 boinc boinc    611279 Nov 29 19:08 input.tar.gz
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc 918758274 Nov 30 07:05 HITS.pool.root.1
[2025-11-30 07:07:44] -rw-------. 1 boinc boinc   7198720 Nov 30 07:07 result.tar.gz
07:07:45 (1448827): run_atlas exited; CPU time 115869.624455
07:07:45 (1448827): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN