Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:17:51 (3748851): wrapper (7.7.26015): starting
10:17:51 (3748851): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 10:17:51] Arguments: --nthreads 3
[2025-11-26 10:17:51] Threads: 3
[2025-11-26 10:17:51] Checking for CVMFS
[2025-11-26 10:17:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 10:17:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 10:17:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 10:17:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 10:17:51] 2.9.2.0 2184780 587 71352 153316 0 85 35581136 36864001 0 130560 0 4669971 99.999 19637 28295 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 10:17:51] CVMFS is ok
[2025-11-26 10:17:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 10:17:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 10:17:51] Further information can be found at the LHC@home message board.
[2025-11-26 10:17:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 10:17:51] Checking for apptainer binary...
[2025-11-26 10:17:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 10:17:51] Running /usr/bin/apptainer --version
[2025-11-26 10:17:51] apptainer version 1.4.1-1.1
[2025-11-26 10:17:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 10:17:51] thA335
[2025-11-26 10:17:51] apptainer works
[2025-11-26 10:17:51] Set ATHENA_PROC_NUMBER=3
[2025-11-26 10:17:51] Set ATHENA_CORE_NUMBER=3
[2025-11-26 10:17:51] Starting ATLAS job with PandaID=6896766452
[2025-11-26 10:17:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:22:10]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:22:10] 2025-11-26 09:21:19,000 | INFO     | update_server=False
[2025-11-26 10:22:10] 2025-11-26 09:21:19,000 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:22:10] 2025-11-26 09:21:19,000 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:22:10] 2025-11-26 09:21:19,044 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:22:10] 2025-11-26 09:21:19,402 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 10:22:10] 2025-11-26 09:21:19,402 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 10:22:10] 2025-11-26 09:21:19,402 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:22:10] 2025-11-26 09:21:19,403 | INFO     | will abort loop
[2025-11-26 10:22:10] 2025-11-26 09:21:19,412 | INFO     | all data control threads have been joined
[2025-11-26 10:22:10] 2025-11-26 09:21:19,778 | INFO     | all payload control threads have been joined
[2025-11-26 10:22:10] 2025-11-26 09:21:20,006 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:20,007 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:20,113 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:20,307 | INFO     | all job control threads have been joined
[2025-11-26 10:22:10] 2025-11-26 09:21:20,363 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:20,408 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:20,418 | INFO     | [data] control thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:20,468 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:20,742 | INFO     | [job] validate thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:20,783 | INFO     | [payload] control thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:20,816 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:20,885 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:20,933 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:21,050 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:21,313 | INFO     | [job] control thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:21,372 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:21,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:22:10] 2025-11-26 09:21:25,430 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:22:10] 2025-11-26 09:21:49,164 | INFO     | PID=3752586 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:22:10] 2025-11-26 09:21:49,165 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:22:10] 2025-11-26 09:21:49,165 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:22:10] 2025-11-26 09:21:49,165 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:22:10] 2025-11-26 09:22:04,035 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:22:10] 2025-11-26 09:22:05,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139119269696)>', '<ExcThread(monitor, started 140138222950144)>']
[2025-11-26 10:22:10] 2025-11-26 09:22:06,254 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:22:10] 2025-11-26 09:22:06,255 | INFO     | [monitor] control thread has ended
[2025-11-26 10:22:10] 2025-11-26 09:22:10,303 | INFO     | all workflow threads have been joined
[2025-11-26 10:22:10] 2025-11-26 09:22:10,304 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:22:10] 2025-11-26 09:22:10,305 | INFO     | traces error code: 0
[2025-11-26 10:22:10] 2025-11-26 09:22:10,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:22:10] 2025-11-26 09:22:10,353 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:22:10] 2025-11-26 09:22:10,356 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:22:10] 2025-11-26 09:22:10,359 [wrapper] pilotpid: 3752586
[2025-11-26 10:22:10] 2025-11-26 09:22:10,362 [wrapper] Pilot exit status: 0
[2025-11-26 10:22:10] 2025-11-26 09:22:10,369 [wrapper] pandaids: 6896766452
[2025-11-26 10:22:10] 2025-11-26 09:22:10,386 [wrapper] cleanup supervisor_pilot 3752592 3752587
[2025-11-26 10:22:10] 2025-11-26 09:22:10,389 [wrapper] Test setup, not cleaning
[2025-11-26 10:22:10] 2025-11-26 09:22:10,391 [wrapper] apfmon messages muted
[2025-11-26 10:22:10] 2025-11-26 09:22:10,394 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:22:10] 2025-11-26 09:22:10,397 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:22:10]  *** Error codes and diagnostics ***
[2025-11-26 10:22:10]     "exeErrorCode": 65,
[2025-11-26 10:22:10]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 10:22:10]     "pilotErrorCode": 1305,
[2025-11-26 10:22:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 10:22:10]  *** Listing of results directory ***
[2025-11-26 10:22:10] total 407104
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc    576529 Nov 25 10:44 pilot3.tar.gz
[2025-11-26 10:22:10] -rwx------ 1 boinc boinc     36292 Nov 25 11:06 runpilot2-wrapper.sh
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc      5112 Nov 25 11:06 queuedata.json
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc       100 Nov 26 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:22:10] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 10:17 run_atlas
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc       105 Nov 26 10:17 job.xml
[2025-11-26 10:22:10] -rw-r--r-- 2 boinc boinc 412692344 Nov 26 10:17 EVNT.47483658._004279.pool.root.1
[2025-11-26 10:22:10] -rw-r--r-- 2 boinc boinc    590101 Nov 26 10:17 input.tar.gz
[2025-11-26 10:22:10] -rw-r--r-- 2 boinc boinc     15847 Nov 26 10:17 start_atlas.sh
[2025-11-26 10:22:10] drwxrwx--x 2 boinc boinc      4096 Nov 26 10:17 shared
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc         0 Nov 26 10:17 boinc_setup_complete
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc      6196 Nov 26 10:17 init_data.xml
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc         0 Nov 26 10:17 boinc_lockfile
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc      2785 Nov 26 10:17 pandaJob.out
[2025-11-26 10:22:10] -rw------- 1 boinc boinc    991827 Nov 26 10:18 agis_schedconf.cvmfs.json
[2025-11-26 10:22:10] -rw------- 1 boinc boinc   1516240 Nov 26 10:18 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:22:10] drwx------ 5 boinc boinc      4096 Nov 26 10:18 pilot3
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc       523 Nov 26 10:18 boinc_task_state.xml
[2025-11-26 10:22:10] -rw------- 1 boinc boinc       956 Nov 26 10:19 memory_monitor_summary.json
[2025-11-26 10:22:10] -rw------- 1 boinc boinc     55752 Nov 26 10:19 log.47556185._000429.job.log.tgz.1
[2025-11-26 10:22:10] -rw------- 1 boinc boinc        95 Nov 26 10:21 pilot_heartbeat.json
[2025-11-26 10:22:10] -rw------- 1 boinc boinc      8402 Nov 26 10:21 heartbeat.json
[2025-11-26 10:22:10] -rw------- 1 boinc boinc      4938 Nov 26 10:22 pilotlog.txt
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc      8192 Nov 26 10:22 boinc_mmap_file
[2025-11-26 10:22:10] -rw------- 1 boinc boinc     93634 Nov 26 10:22 log.47556185._000429.job.log.1
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc        23 Nov 26 10:22 wrapper_checkpoint.txt
[2025-11-26 10:22:10] -rw------- 1 boinc boinc       186 Nov 26 10:22 output.list
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc       620 Nov 26 10:22 runtime_log
[2025-11-26 10:22:10] -rw------- 1 boinc boinc    163840 Nov 26 10:22 result.tar.gz
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc      8744 Nov 26 10:22 runtime_log.err
[2025-11-26 10:22:10] -rw------- 1 boinc boinc       649 Nov 26 10:22 WbzKDmP74h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwJMKDmqovyjn.diag
[2025-11-26 10:22:10] -rw-r--r-- 1 boinc boinc      8020 Nov 26 10:22 stderr.txt
[2025-11-26 10:22:10] No HITS result produced
[2025-11-26 10:22:10]  *** Contents of shared directory: ***
[2025-11-26 10:22:10] total 403780
[2025-11-26 10:22:10] -rw-r--r-- 2 boinc boinc 412692344 Nov 26 10:17 ATLAS.root_0
[2025-11-26 10:22:10] -rw-r--r-- 2 boinc boinc    590101 Nov 26 10:17 input.tar.gz
[2025-11-26 10:22:10] -rw-r--r-- 2 boinc boinc     15847 Nov 26 10:17 start_atlas.sh
[2025-11-26 10:22:10] -rw------- 1 boinc boinc    163840 Nov 26 10:22 result.tar.gz
10:22:12 (3748851): run_atlas exited; CPU time 31.998228
10:22:12 (3748851): called boinc_finish(0)

</stderr_txt>
]]>

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