Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:00:25 (28774): wrapper (7.7.26015): starting
18:00:25 (28774): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 18:00:25] Arguments: --nthreads 8
[2025-11-28 18:00:25] Threads: 8
[2025-11-28 18:00:25] Checking for CVMFS
[2025-11-28 18:00:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 18:00:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 18:00:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 18:00:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 18:00:28] 2.11.2.0 6410 288322 136796 153412 0 84 15701967 25165824 1294 130560 13 134695483 99.887 76885209 2957 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 18:00:28] CVMFS is ok
[2025-11-28 18:00:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 18:00:28] Checking for apptainer binary...
[2025-11-28 18:00:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 18:00:28] Running /usr/bin/apptainer --version
[2025-11-28 18:00:28] apptainer version 1.3.2-1.el7
[2025-11-28 18:00:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 18:00:38] cg-vwn284.simple-grid.lan
[2025-11-28 18:00:38] apptainer works
[2025-11-28 18:00:38] Set ATHENA_PROC_NUMBER=8
[2025-11-28 18:00:38] Set ATHENA_CORE_NUMBER=8
[2025-11-28 18:00:38] Starting ATLAS job with PandaID=6895348445
[2025-11-28 18:00:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 17:42:06]  *** The last 200 lines of the pilot log: ***
[2025-11-29 17:42:06] 2025-11-29 16:41:05,769 | INFO     | .. there are 9 such processes running
[2025-11-29 17:42:06] 2025-11-29 16:41:06,769 | INFO     | time since job start (84997s) is within the limit (172800.0s)
[2025-11-29 17:42:06] 2025-11-29 16:41:08,166 | INFO     | monitor loop #5677: job 0:6895348445 is in state 'finished'
[2025-11-29 17:42:06] 2025-11-29 16:41:08,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 17:42:06] 2025-11-29 16:41:08,785 | INFO     | time since job start (84999s) is within the limit (172800.0s)
[2025-11-29 17:42:06] 2025-11-29 16:41:10,670 | INFO     | monitor loop #5678: job 0:6895348445 is in state 'finished'
[2025-11-29 17:42:06] 2025-11-29 16:41:10,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 17:42:06] 2025-11-29 16:41:10,800 | INFO     | time since job start (85001s) is within the limit (172800.0s)
[2025-11-29 17:42:06] 2025-11-29 16:41:12,807 | INFO     | time since job start (85003s) is within the limit (172800.0s)
[2025-11-29 17:42:06] 2025-11-29 16:41:13,190 | INFO     | monitor loop #5679: job 0:6895348445 is in state 'finished'
[2025-11-29 17:42:06] 2025-11-29 16:41:13,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 17:42:06] 2025-11-29 16:41:14,822 | INFO     | time since job start (85005s) is within the limit (172800.0s)
[2025-11-29 17:42:06] 2025-11-29 16:41:15,695 | INFO     | monitor loop #5680: job 0:6895348445 is in state 'finished'
[2025-11-29 17:42:06] 2025-11-29 16:41:15,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 17:42:06] 2025-11-29 16:41:16,829 | INFO     | time since job start (85007s) is within the limit (172800.0s)
[2025-11-29 17:42:06] 2025-11-29 16:41:17,627 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 17:42:06] 2025-11-29 16:41:17,629 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-29 17:42:06] 2025-11-29 16:41:17,632 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6895348445/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 17:42:06] 2025-11-29 16:41:17,632 | INFO     | extracted standard info from prmon json
[2025-11-29 17:42:06] 2025-11-29 16:41:17,633 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 17:42:06] 2025-11-29 16:41:17,633 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 17:42:06] 2025-11-29 16:41:17,657 | INFO     | fitting pss+swap vs Time
[2025-11-29 17:42:06] 2025-11-29 16:41:17,660 | INFO     | sum of square deviations: 832762421093.9534
[2025-11-29 17:42:06] 2025-11-29 16:41:17,722 | INFO     | sum of deviations: 2065892684015.2214
[2025-11-29 17:42:06] 2025-11-29 16:41:17,722 | INFO     | mean x: 1764391992.6057553
[2025-11-29 17:42:06] 2025-11-29 16:41:17,722 | INFO     | mean y: 2852180.522302158
[2025-11-29 17:42:06] 2025-11-29 16:41:17,722 | INFO     | intersect: -4374199925.732657
[2025-11-29 17:42:06] 2025-11-29 16:41:17,724 | INFO     | chi2: 17.725357551981578
[2025-11-29 17:42:06] 2025-11-29 16:41:17,726 | INFO     | sum of square deviations: 823808498725.3192
[2025-11-29 17:42:06] 2025-11-29 16:41:17,789 | INFO     | sum of deviations: 2524856209253.3813
[2025-11-29 17:42:06] 2025-11-29 16:41:17,789 | INFO     | mean x: 1764391840.1097474
[2025-11-29 17:42:06] 2025-11-29 16:41:17,790 | INFO     | mean y: 2859996.2606498194
[2025-11-29 17:42:06] 2025-11-29 16:41:17,790 | INFO     | intersect: -5404750753.021584
[2025-11-29 17:42:06] 2025-11-29 16:41:17,791 | INFO     | chi2: 14.471731716351753
[2025-11-29 17:42:06] 2025-11-29 16:41:17,792 | INFO     | current chi2=14.471731716351753 (change=18.35576984040071 %)
[2025-11-29 17:42:06] 2025-11-29 16:41:17,792 | INFO     | right removable region: 1384
[2025-11-29 17:42:06] 2025-11-29 16:41:17,794 | INFO     | sum of square deviations: 823807561155.3191
[2025-11-29 17:42:06] 2025-11-29 16:41:17,855 | INFO     | sum of deviations: 1622346124311.526
[2025-11-29 17:42:06] 2025-11-29 16:41:17,856 | INFO     | mean x: 1764392145.1097474
[2025-11-29 17:42:06] 2025-11-29 16:41:17,856 | INFO     | mean y: 2859730.397833935
[2025-11-29 17:42:06] 2025-11-29 16:41:17,856 | INFO     | intersect: -3471804612.7773514
[2025-11-29 17:42:06] 2025-11-29 16:41:17,858 | INFO     | chi2: 15.019616820803341
[2025-11-29 17:42:06] 2025-11-29 16:41:17,858 | INFO     | current chi2=15.019616820803341 (change=15.264801983504997 %)
[2025-11-29 17:42:06] 2025-11-29 16:41:17,858 | INFO     | left removable region: 10
[2025-11-29 17:42:06] 2025-11-29 16:41:17,860 | INFO     | sum of square deviations: 804334761391.1005
[2025-11-29 17:42:06] 2025-11-29 16:41:17,909 | INFO     | sum of deviations: 2056983863690.2842
[2025-11-29 17:42:06] 2025-11-29 16:41:17,910 | INFO     | mean x: 1764392114.6157205
[2025-11-29 17:42:06] 2025-11-29 16:41:17,910 | INFO     | mean y: 2871471.5516739446
[2025-11-29 17:42:06] 2025-11-29 16:41:17,910 | INFO     | intersect: -4509336980.946363
[2025-11-29 17:42:06] 2025-11-29 16:41:17,912 | INFO     | chi2: 10.872217605034217
[2025-11-29 17:42:06] 2025-11-29 16:41:17,912 | INFO     | current memory leak: 2.56 B/s (using 1374 data points, chi2=10.87)
[2025-11-29 17:42:06] 2025-11-29 16:41:17,913 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-29 17:42:06] 2025-11-29 16:41:17,913 | INFO     | ..............................
[2025-11-29 17:42:06] 2025-11-29 16:41:17,913 | INFO     | . Timing measurements:
[2025-11-29 17:42:06] 2025-11-29 16:41:17,913 | INFO     | . get job = 0 s
[2025-11-29 17:42:06] 2025-11-29 16:41:17,913 | INFO     | . initial setup = 15 s
[2025-11-29 17:42:06] 2025-11-29 16:41:17,914 | INFO     | . payload setup = 18 s
[2025-11-29 17:42:06] 2025-11-29 16:41:17,914 | INFO     | . stage-in = 0 s
[2025-11-29 17:42:06] 2025-11-29 16:41:17,914 | INFO     | . payload execution = 84765 s
[2025-11-29 17:42:06] 2025-11-29 16:41:17,914 | INFO     | . stage-out = 4 s
[2025-11-29 17:42:06] 2025-11-29 16:41:17,914 | INFO     | . log creation = 1 s
[2025-11-29 17:42:06] 2025-11-29 16:41:17,914 | INFO     | ..............................
[2025-11-29 17:42:06] 2025-11-29 16:41:18,028 | INFO     | 
[2025-11-29 17:42:06] 2025-11-29 16:41:18,028 | INFO     | job summary report
[2025-11-29 17:42:06] 2025-11-29 16:41:18,029 | INFO     | --------------------------------------------------
[2025-11-29 17:42:06] 2025-11-29 16:41:18,029 | INFO     | PanDA job id: 6895348445
[2025-11-29 17:42:06] 2025-11-29 16:41:18,029 | INFO     | task id: 47556137
[2025-11-29 17:42:06] 2025-11-29 16:41:18,029 | INFO     | errors: (none)
[2025-11-29 17:42:06] 2025-11-29 16:41:18,029 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 17:42:06] 2025-11-29 16:41:18,029 | INFO     | pilot state: finished 
[2025-11-29 17:42:06] 2025-11-29 16:41:18,029 | INFO     | transexitcode: 0
[2025-11-29 17:42:06] 2025-11-29 16:41:18,029 | INFO     | exeerrorcode: 0
[2025-11-29 17:42:06] 2025-11-29 16:41:18,029 | INFO     | exeerrordiag: 
[2025-11-29 17:42:06] 2025-11-29 16:41:18,029 | INFO     | exitcode: 0
[2025-11-29 17:42:06] 2025-11-29 16:41:18,029 | INFO     | exitmsg: OK
[2025-11-29 17:42:06] 2025-11-29 16:41:18,030 | INFO     | cpuconsumptiontime: 320558 s
[2025-11-29 17:42:06] 2025-11-29 16:41:18,030 | INFO     | nevents: 1000
[2025-11-29 17:42:06] 2025-11-29 16:41:18,030 | INFO     | neventsw: 0
[2025-11-29 17:42:06] 2025-11-29 16:41:18,030 | INFO     | pid: 6751
[2025-11-29 17:42:06] 2025-11-29 16:41:18,030 | INFO     | pgrp: 6751
[2025-11-29 17:42:06] 2025-11-29 16:41:18,030 | INFO     | corecount: 8
[2025-11-29 17:42:06] 2025-11-29 16:41:18,030 | INFO     | event service: False
[2025-11-29 17:42:06] 2025-11-29 16:41:18,030 | INFO     | sizes: {0: 2284038, 1: 2284122, 2: 2284321, 13: 2284321, 23: 2284377, 34: 2284405, 45: 2284561, 56: 2284589, 66: 2284617, 77: 2284645, 88: 2284701, 99: 2285299, 84
[2025-11-29 17:42:06] 2025-11-29 16:41:18,030 | INFO     | --------------------------------------------------
[2025-11-29 17:42:06] 2025-11-29 16:41:18,030 | INFO     | 
[2025-11-29 17:42:06] 2025-11-29 16:41:18,031 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-29 17:42:06] 2025-11-29 16:41:18,070 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,071 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,071 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,071 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,071 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,071 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,071 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,071 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,071 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,072 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,072 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,072 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,072 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,072 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,072 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,072 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,072 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,072 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 17:42:06] 2025-11-29 16:41:18,073 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,073 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 17:42:06] 2025-11-29 16:41:18,073 | INFO     | job 6895348445 has completed (purged errors)
[2025-11-29 17:42:06] 2025-11-29 16:41:18,073 | INFO     | overall cleanup function is called
[2025-11-29 17:42:06] 2025-11-29 16:41:19,090 | INFO     | --- collectZombieJob: --- 10, [6751]
[2025-11-29 17:42:06] 2025-11-29 16:41:19,090 | INFO     | zombie collector waiting for pid 6751
[2025-11-29 17:42:06] 2025-11-29 16:41:19,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 17:42:06] 2025-11-29 16:41:19,091 | INFO     | collected zombie processes
[2025-11-29 17:42:06] 2025-11-29 16:41:19,091 | INFO     | will attempt to kill all subprocesses of pid=6751
[2025-11-29 17:42:06] 2025-11-29 16:41:19,193 | INFO     | process IDs to be killed: [6751] (in reverse order)
[2025-11-29 17:42:06] 2025-11-29 16:41:19,364 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 17:42:06] 2025-11-29 16:41:19,364 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 17:42:06] 2025-11-29 16:41:19,371 | INFO     | did not find any defunct processes belonging to 6751
[2025-11-29 17:42:06] 2025-11-29 16:41:19,374 | INFO     | did not find any defunct processes belonging to 6751
[2025-11-29 17:42:06] 2025-11-29 16:41:19,377 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 17:42:06] 2025-11-29 16:41:19,377 | INFO     | ready for new job
[2025-11-29 17:42:06] 2025-11-29 16:41:19,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 17:42:06] 2025-11-29 16:41:19,382 | INFO     | ***************************************
[2025-11-29 17:42:06] 2025-11-29 16:41:19,383 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 17:42:06] 2025-11-29 16:41:19,383 | INFO     | ***************************************
[2025-11-29 17:42:06] 2025-11-29 16:41:19,383 | INFO     | 
[2025-11-29 17:42:06] 2025-11-29 16:41:19,383 | INFO     | pilot is running in a VM
[2025-11-29 17:42:06] 2025-11-29 16:41:19,384 | INFO     | architecture information:
[2025-11-29 17:42:06] 2025-11-29 16:41:19,387 | INFO     | executing command: cat /etc/os-release
[2025-11-29 17:42:06] 2025-11-29 16:41:19,558 | INFO     | cat /etc/os-release:
[2025-11-29 17:42:06] NAME="CentOS Linux"
[2025-11-29 17:42:06] VERSION="7 (Core)"
[2025-11-29 17:42:06] ID="centos"
[2025-11-29 17:42:06] ID_LIKE="rhel fedora"
[2025-11-29 17:42:06] VERSION_ID="7"
[2025-11-29 17:42:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 17:42:06] ANSI_COLOR="0;31"
[2025-11-29 17:42:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 17:42:06] HOME_URL="https://www.centos.org/"
[2025-11-29 17:42:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 17:42:06] 
[2025-11-29 17:42:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 17:42:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 17:42:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 17:42:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 17:42:06] 
[2025-11-29 17:42:06] 2025-11-29 16:41:19,559 | INFO     | ***************************************
[2025-11-29 17:42:06] 2025-11-29 16:41:20,062 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-29 17:42:06] 2025-11-29 16:41:20,223 | INFO     | sufficient remaining disk space (488176091136 B)
[2025-11-29 17:42:06] 2025-11-29 16:41:20,223 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 17:42:06] 2025-11-29 16:41:20,224 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 17:42:06] 2025-11-29 16:41:20,224 | INFO     | update_server=False
[2025-11-29 17:42:06] 2025-11-29 16:41:20,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 17:42:06] 2025-11-29 16:41:20,226 | INFO     | all job control threads have been joined
[2025-11-29 17:42:06] 2025-11-29 16:41:20,230 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 17:42:06] 2025-11-29 16:41:20,230 | INFO     | aborting loop
[2025-11-29 17:42:06] 2025-11-29 16:41:20,461 | INFO     | all data control threads have been joined
[2025-11-29 17:42:06] 2025-11-29 16:41:20,687 | INFO     | all payload control threads have been joined
[2025-11-29 17:42:06] 2025-11-29 16:41:20,973 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 17:42:06] 2025-11-29 16:41:21,231 | INFO     | [job] retrieve thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:21,232 | INFO     | [job] control thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:21,236 | INFO     | [job] job monitor thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:21,255 | INFO     | [payload] failed_post thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:21,300 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:21,467 | INFO     | [data] control thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:21,550 | INFO     | [data] copytool_in thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:21,693 | INFO     | [payload] control thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:21,773 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 17:42:06] 2025-11-29 16:41:22,200 | INFO     | [job] validate thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:22,317 | INFO     | [payload] validate_post thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:22,707 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:22,732 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:22,980 | INFO     | [data] copytool_out thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:23,043 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 17:42:06] 2025-11-29 16:41:24,049 | INFO     | [job] queue monitor thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:25,783 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:30,896 | INFO     | job.realtimelogging is not enabled
[2025-11-29 17:42:06] 2025-11-29 16:41:31,902 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 17:42:06] 2025-11-29 16:41:49,985 | INFO     | PID=32567 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 17:42:06] 2025-11-29 16:41:49,985 | INFO     | .. there are 9 such processes running
[2025-11-29 17:42:06] 2025-11-29 16:41:49,986 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 17:42:06] 2025-11-29 16:41:49,986 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 17:42:06] 2025-11-29 16:41:49,986 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 17:42:06] 2025-11-29 16:41:57,283 | INFO     | [monitor] cgroup control has ended
[2025-11-29 17:42:06] 2025-11-29 16:41:57,737 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139939278280512)>', '<ExcThread(monitor, started 139938616043264)>']
[2025-11-29 17:42:06] 2025-11-29 16:41:58,032 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 17:42:06] 2025-11-29 16:41:58,032 | INFO     | [monitor] control thread has ended
[2025-11-29 17:42:06] 2025-11-29 16:42:02,763 | INFO     | all workflow threads have been joined
[2025-11-29 17:42:06] 2025-11-29 16:42:02,763 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 17:42:06] 2025-11-29 16:42:02,764 | INFO     | traces error code: 0
[2025-11-29 17:42:06] 2025-11-29 16:42:02,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 17:42:06] 2025-11-29 16:42:03,030 [wrapper] ==== pilot stdout END ====
[2025-11-29 17:42:06] 2025-11-29 16:42:03,098 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 17:42:06] 2025-11-29 16:42:03,205 [wrapper] pilotpid: 32567
[2025-11-29 17:42:06] 2025-11-29 16:42:03,335 [wrapper] Pilot exit status: 0
[2025-11-29 17:42:06] 2025-11-29 16:42:03,720 [wrapper] pandaids: 6895348445
[2025-11-29 17:42:06] 2025-11-29 16:42:04,456 [wrapper] cleanup supervisor_pilot 11650 32568
[2025-11-29 17:42:06] 2025-11-29 16:42:04,521 [wrapper] Test setup, not cleaning
[2025-11-29 17:42:06] 2025-11-29 16:42:04,641 [wrapper] apfmon messages muted
[2025-11-29 17:42:06] 2025-11-29 16:42:04,719 [wrapper] ==== wrapper stdout END ====
[2025-11-29 17:42:06] 2025-11-29 16:42:04,815 [wrapper] ==== wrapper stderr END ====
[2025-11-29 17:42:06]  *** Error codes and diagnostics ***
[2025-11-29 17:42:06]     "exeErrorCode": 0,
[2025-11-29 17:42:06]     "exeErrorDiag": "",
[2025-11-29 17:42:06]     "pilotErrorCode": 0,
[2025-11-29 17:42:06]     "pilotErrorDiag": "",
[2025-11-29 17:42:06]  *** Listing of results directory ***
[2025-11-29 17:42:06] total 1342020
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc    576529 Nov 22 20:25 pilot3.tar.gz
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc      5112 Nov 22 20:54 queuedata.json
[2025-11-29 17:42:06] -rwx------. 1 boinc boinc     36292 Nov 22 20:54 runpilot2-wrapper.sh
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc       100 Nov 28 18:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 17:42:06] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 18:00 run_atlas
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc       105 Nov 28 18:00 job.xml
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc      6392 Nov 28 18:00 init_data.xml
[2025-11-29 17:42:06] -rw-r--r--. 2 boinc boinc 408542269 Nov 28 18:00 EVNT.47483658._000480.pool.root.1
[2025-11-29 17:42:06] -rw-r--r--. 2 boinc boinc     15847 Nov 28 18:00 start_atlas.sh
[2025-11-29 17:42:06] drwxrwx--x. 2 boinc boinc        68 Nov 28 18:00 shared
[2025-11-29 17:42:06] -rw-r--r--. 2 boinc boinc    590106 Nov 28 18:00 input.tar.gz
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc         0 Nov 28 18:00 boinc_lockfile
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc      2785 Nov 28 18:00 pandaJob.out
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc    991826 Nov 28 18:04 agis_schedconf.cvmfs.json
[2025-11-29 17:42:06] drwx------. 5 boinc boinc      4096 Nov 28 18:04 pilot3
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc       533 Nov 29 17:13 boinc_task_state.xml
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc 934140902 Nov 29 17:38 HITS.47556137._004760.pool.root.1
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc      1032 Nov 29 17:39 memory_monitor_summary.json
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc   1516240 Nov 29 17:39 agis_ddmendpoints.agis.ALL.json
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc   2480766 Nov 29 17:39 log.47556137._004760.job.log.tgz.1
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc        95 Nov 29 17:40 pilot_heartbeat.json
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc      8637 Nov 29 17:41 heartbeat.json
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc        29 Nov 29 17:41 wrapper_checkpoint.txt
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc      8192 Nov 29 17:41 boinc_mmap_file
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc      4957 Nov 29 17:42 pilotlog.txt
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc  11338973 Nov 29 17:42 log.47556137._004760.job.log.1
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc       353 Nov 29 17:42 output.list
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc       620 Nov 29 17:42 runtime_log
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc  13844480 Nov 29 17:42 result.tar.gz
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc      8833 Nov 29 17:42 runtime_log.err
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc       662 Nov 29 17:42 OAmLDmnr8g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIGIKDm4Ss7lm.diag
[2025-11-29 17:42:06] -rw-r--r--. 1 boinc boinc     21375 Nov 29 17:42 stderr.txt
[2025-11-29 17:42:06] HITS file was successfully produced:
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc 934140902 Nov 29 17:38 shared/HITS.pool.root.1
[2025-11-29 17:42:06]  *** Contents of shared directory: ***
[2025-11-29 17:42:06] total 1325332
[2025-11-29 17:42:06] -rw-r--r--. 2 boinc boinc 408542269 Nov 28 18:00 ATLAS.root_0
[2025-11-29 17:42:06] -rw-r--r--. 2 boinc boinc     15847 Nov 28 18:00 start_atlas.sh
[2025-11-29 17:42:06] -rw-r--r--. 2 boinc boinc    590106 Nov 28 18:00 input.tar.gz
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc 934140902 Nov 29 17:38 HITS.pool.root.1
[2025-11-29 17:42:06] -rw-------. 1 boinc boinc  13844480 Nov 29 17:42 result.tar.gz
17:42:07 (28774): run_atlas exited; CPU time 321156.442907
17:42:07 (28774): called boinc_finish(0)

</stderr_txt>
]]>

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