Stderr output

<core_client_version>8.2.7</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 04:42:23 (3228): vboxwrapper version 26210
2025-11-26 04:42:23 (3228): BOINC client version: 8.2.7
2025-11-26 04:42:23 (3228): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-11-26 04:42:23 (3228): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 04:42:24 (3228): Create VM. (boinc_4b9d8df7abf8d520, slot#6)
2025-11-26 04:42:26 (3228): Setting Memory Size for VM. (4400MB)
2025-11-26 04:42:26 (3228): Setting CPU Count for VM. (4)
2025-11-26 04:42:26 (3228): Setting Chipset Options for VM.
2025-11-26 04:42:27 (3228): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 04:42:28 (3228): Setting Boot Options for VM.
2025-11-26 04:42:28 (3228): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 04:42:29 (3228): Enabling VM Network Access.
2025-11-26 04:42:29 (3228): Disabling USB Support for VM.
2025-11-26 04:42:30 (3228): Disabling COM Port Support for VM.
2025-11-26 04:42:31 (3228): Disabling LPT Port Support for VM.
2025-11-26 04:42:32 (3228): Disabling Audio Support for VM.
2025-11-26 04:42:32 (3228): Disabling Clipboard Support for VM.
2025-11-26 04:42:33 (3228): Disabling Drag and Drop Support for VM.
2025-11-26 04:42:33 (3228): Adding storage controller(s) to VM.
2025-11-26 04:42:34 (3228): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 04:42:35 (3228): Adding VirtualBox Guest Additions to VM.
2025-11-26 04:42:36 (3228): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 04:42:37 (3228): forwarding host port 61602 to guest port 80
2025-11-26 04:42:37 (3228): Enabling remote desktop for VM.
2025-11-26 04:42:38 (3228): Enabling shared directory for VM.
2025-11-26 04:42:39 (3228): Starting VM using VBoxManage interface. (boinc_4b9d8df7abf8d520, slot#6)
2025-11-26 04:42:43 (3228): Successfully started VM. (PID = '13208')
2025-11-26 04:42:43 (3228): Reporting VM Process ID to BOINC.
2025-11-26 04:42:43 (3228): Guest Log: BIOS: VirtualBox 7.2.0
2025-11-26 04:42:43 (3228): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 04:42:43 (3228): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 04:42:43 (3228): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 04:42:43 (3228): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 04:42:43 (3228): Detected: Web Application Enabled (http://localhost:61602)
2025-11-26 04:42:43 (3228): Detected: Remote Desktop Enabled (localhost:61610)
2025-11-26 04:42:43 (3228): Preference change detected
2025-11-26 04:42:43 (3228): Setting CPU throttle for VM. (100%)
2025-11-26 04:42:44 (3228): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 04:42:45 (3228): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 04:42:45 (3228): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 04:42:48 (3228): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 04:42:48 (3228): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 04:42:48 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 04:43:13 (3228): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 04:43:13 (3228): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 04:43:27 (3228): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 04:43:27 (3228): Guest Log: 00:00:00.000122 main     Log opened 2025-11-26T04:43:25.125933000Z
2025-11-26 04:43:27 (3228): Guest Log: 00:00:00.000209 main     OS Product: Linux
2025-11-26 04:43:27 (3228): Guest Log: 00:00:00.000235 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 04:43:27 (3228): Guest Log: 00:00:00.000254 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 04:43:27 (3228): Guest Log: 00:00:00.000272 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 04:43:27 (3228): Guest Log: 00:00:00.000273 main     Process ID: 1307
2025-11-26 04:43:27 (3228): Guest Log: 00:00:00.000273 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 04:43:27 (3228): Guest Log: 00:00:00.000901 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 04:43:27 (3228): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 04:43:27 (3228): Guest Log: [INFO] Mounting shared directory
2025-11-26 04:43:27 (3228): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 04:43:36 (3228): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 04:43:36 (3228): Guest Log: [INFO] Detected branch: prod
2025-11-26 04:43:36 (3228): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 04:43:36 (3228): Guest Log: Copying input files
2025-11-26 04:43:37 (3228): Guest Log: 00:00:10.014272 timesync vgsvcTimeSyncWorker: Radical guest time change: 17 988 384 648 000ns (GuestNow=1 764 150 193 512 346 000 ns GuestLast=1 764 132 205 127 698 000 ns fSetTimeLastLoop=true )
2025-11-26 04:43:41 (3228): Guest Log: Copied input files into RunAtlas.
2025-11-26 04:43:41 (3228): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 04:43:41 (3228): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 04:43:41 (3228): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 04:43:41 (3228): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 04:43:52 (3228): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 04:43:52 (3228): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 04:43:52 (3228): Guest Log: 2.6.3.0 1586 0 32200 153316 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 04:43:55 (3228): Guest Log: copied the webapp to /var/www
2025-11-26 04:43:55 (3228): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-26 04:43:55 (3228): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-26 04:43:55 (3228): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 04:43:55 (3228): Guest Log:  *** Starting ATLAS job. (PandaID=6896922357 taskID=47556161) ***
2025-11-26 06:22:46 (3228): Status Report: Elapsed Time: '6000.000000'
2025-11-26 06:22:46 (3228): Status Report: CPU Time: '21176.328125'
2025-11-26 08:02:49 (3228): Status Report: Elapsed Time: '12000.000000'
2025-11-26 08:02:49 (3228): Status Report: CPU Time: '44872.796875'
2025-11-26 09:42:52 (3228): Status Report: Elapsed Time: '18000.000000'
2025-11-26 09:42:52 (3228): Status Report: CPU Time: '68737.250000'
2025-11-26 11:23:00 (3228): Status Report: Elapsed Time: '24000.000000'
2025-11-26 11:23:00 (3228): Status Report: CPU Time: '92528.781250'
2025-11-26 13:03:03 (3228): Status Report: Elapsed Time: '30000.000000'
2025-11-26 13:03:03 (3228): Status Report: CPU Time: '116273.406250'
2025-11-26 13:36:39 (3228): VM state change detected. (old = 'running', new = 'paused')
2025-11-26 13:51:46 (3228): VM state change detected. (old = 'paused', new = 'running')
2025-11-26 14:58:14 (3228): Status Report: Elapsed Time: '36000.000000'
2025-11-26 14:58:14 (3228): Status Report: CPU Time: '140020.796875'
2025-11-26 16:38:17 (3228): Status Report: Elapsed Time: '42000.000000'
2025-11-26 16:38:17 (3228): Status Report: CPU Time: '163715.250000'
2025-11-26 18:18:20 (3228): Status Report: Elapsed Time: '48000.000000'
2025-11-26 18:18:20 (3228): Status Report: CPU Time: '187473.031250'
2025-11-26 19:58:23 (3228): Status Report: Elapsed Time: '54000.000000'
2025-11-26 19:58:23 (3228): Status Report: CPU Time: '211311.312500'
2025-11-26 21:34:35 (3228): Guest Log:  *** Job finished ***
2025-11-26 21:34:35 (3228): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:04,432 | INFO     | PID=6008 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:04,432 | INFO     | found 0 job(s) in 20 queues
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:04,432 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:04,432 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:04,432 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:04,432 | INFO     | [monitor] control thread has ended
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:08,781 | INFO     | all workflow threads have been joined
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:08,781 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:08,782 | INFO     | traces error code: 0
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:08,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:09,039 [wrapper] ==== pilot stdout END ====
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:09,042 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:09,045 [wrapper] pilotpid: 6008
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:09,049 [wrapper] Pilot exit status: 0
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:09,083 [wrapper] pandaids: 6896922357
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:09,105 [wrapper] cleanup supervisor_pilot 25011 6009
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:09,108 [wrapper] Test setup, not cleaning
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:09,114 [wrapper] apfmon messages muted
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:09,118 [wrapper] ==== wrapper stdout END ====
2025-11-26 21:34:35 (3228): Guest Log: 2025-11-27 02:19:09,121 [wrapper] ==== wrapper stderr END ====
2025-11-26 21:34:35 (3228): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 21:34:35 (3228): Guest Log:     "exeErrorCode": 0,
2025-11-26 21:34:35 (3228): Guest Log:     "exeErrorDiag": "",
2025-11-26 21:34:35 (3228): Guest Log:     "pilotErrorCode": 0,
2025-11-26 21:34:35 (3228): Guest Log:     "pilotErrorDiag": "",
2025-11-26 21:34:35 (3228): Guest Log:  *** Listing of results directory ***
2025-11-26 21:34:35 (3228): Guest Log: total 925980
2025-11-26 21:34:35 (3228): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 25 10:51 pilot3.tar.gz
2025-11-26 21:34:35 (3228): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 25 11:05 runpilot2-wrapper.sh
2025-11-26 21:34:35 (3228): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 25 11:05 queuedata.json
2025-11-26 21:34:35 (3228): Guest Log: -rwxr-xr-x. 1 atlas atlas      8486 Nov 26 09:43 init_data.xml
2025-11-26 21:34:35 (3228): Guest Log: -rwxr-xr-x. 1 atlas atlas    590100 Nov 26 09:43 input.tar.gz
2025-11-26 21:34:35 (3228): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 09:43 start_atlas.sh
2025-11-26 21:34:35 (3228): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 09:43 EVNT.47483658._002140.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 21:34:35 (3228): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 26 09:43 pandaJob.out
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas    991827 Nov 26 09:44 agis_schedconf.cvmfs.json
2025-11-26 21:34:35 (3228): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 09:45 pilot3
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas 925159724 Nov 27 02:17 HITS.47556161._001235.pool.root.1
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas      1037 Nov 27 02:18 memory_monitor_summary.json
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 02:18 agis_ddmendpoints.agis.ALL.json
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas   1681665 Nov 27 02:18 log.47556161._001235.job.log.tgz.1
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 02:18 pilot_heartbeat.json
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas      8634 Nov 27 02:18 heartbeat.json
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 27 02:19 pilotlog.txt
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas   7914041 Nov 27 02:19 log.47556161._001235.job.log.1
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 02:19 output.list
2025-11-26 21:34:35 (3228): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 02:19 runtime_log
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas   9615360 Nov 27 02:19 result.tar.gz
2025-11-26 21:34:35 (3228): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Nov 27 02:19 runtime_log.err
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas       660 Nov 27 02:19 6HnKDmP25h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmKMKDmxYqIfn.diag
2025-11-26 21:34:35 (3228): Guest Log: Looking for outputfile HITS.47556161._001235.pool.root.1
2025-11-26 21:34:35 (3228): Guest Log: HITS file was successfully produced
2025-11-26 21:34:35 (3228): Guest Log: -rw-------. 1 atlas atlas 925159724 Nov 27 02:17 /home/atlas/RunAtlas/HITS.47556161._001235.pool.root.1
2025-11-26 21:35:24 (3228): Guest Log: Successfully finished the ATLAS job!
2025-11-26 21:35:24 (3228): Guest Log: Copying the results back to the shared directory!
2025-11-26 21:35:29 (3228): Guest Log:  *** Contents of shared directory: ***
2025-11-26 21:35:29 (3228): Guest Log: total 1312956
2025-11-26 21:35:29 (3228): Guest Log: -rwxrwxrwx. 1 root root 409059538 Nov 26 09:42 ATLAS.root_0
2025-11-26 21:35:29 (3228): Guest Log: -rwxrwxrwx. 1 root root 925159724 Nov 27  2025 HITS.pool.root.1
2025-11-26 21:35:29 (3228): Guest Log: -rwxrwxrwx. 1 root root      8486 Nov 26 09:42 init_data.xml
2025-11-26 21:35:29 (3228): Guest Log: -rwxrwxrwx. 1 root root    590100 Nov 26 07:52 input.tar.gz
2025-11-26 21:35:29 (3228): Guest Log: -rwxrwxrwx. 1 root root   9615360 Nov 27  2025 result.tar.gz
2025-11-26 21:35:29 (3228): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 07:52 start_atlas.sh
2025-11-26 21:35:29 (3228): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 21:35:30 (3228): VM Completion File Detected.
2025-11-26 21:35:30 (3228): Powering off VM.
2025-11-26 21:35:34 (3228): Successfully stopped VM.
2025-11-26 21:35:36 (3228): Deregistering VM. (boinc_4b9d8df7abf8d520, slot#6)
2025-11-26 21:35:36 (3228): Removing network bandwidth throttle group from VM.
2025-11-26 21:35:38 (3228): Removing VM from VirtualBox.
2025-11-26 21:35:49 (3228): called boinc_finish(0)

</stderr_txt>
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