Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:01:00 (25015): wrapper (7.7.26015): starting
13:01:00 (25015): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:01:00] Arguments: --nthreads 8
[2025-11-26 13:01:00] Threads: 8
[2025-11-26 13:01:00] Checking for CVMFS
[2025-11-26 13:01:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:01:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:01:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:01:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:01:00] 2.11.0.0 3942 65913 88380 153320 1 88 3351596 4096000 1261 130560 2 2698590 98.805 6562321 660 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-26 13:01:00] CVMFS is ok
[2025-11-26 13:01:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:01:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:01:00] Further information can be found at the LHC@home message board.
[2025-11-26 13:01:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:01:00] Checking for apptainer binary...
[2025-11-26 13:01:00] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-26 13:01:00] apptainer is not installed, using version from CVMFS
[2025-11-26 13:01:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:01:01] WARNING: Environment variable TMPDIR already has value [/tmp/job_10926064/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node259
[2025-11-26 13:01:01] apptainer works
[2025-11-26 13:01:01] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:01:01] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:01:01] Starting ATLAS job with PandaID=6895346075
[2025-11-26 13:01:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10926064/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:25:37]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:25:37] 2025-11-26 16:24:33,990 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 17:25:37] 2025-11-26 16:24:33,994 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2595.430796875
[2025-11-26 17:25:37] 2025-11-26 16:24:33,999 | INFO     | using path: /tmp/job_10926064/atlas/pilot/slots/0/PanDA_Pilot-6895346075/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:25:37] 2025-11-26 16:24:33,999 | INFO     | extracted standard info from prmon json
[2025-11-26 17:25:37] 2025-11-26 16:24:34,000 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:25:37] 2025-11-26 16:24:34,000 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:25:37] 2025-11-26 16:24:34,002 | INFO     | fitting pss+swap vs Time
[2025-11-26 17:25:37] 2025-11-26 16:24:34,002 | INFO     | sum of square deviations: 5387301010.0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,003 | INFO     | sum of deviations: 131760902677.99998
[2025-11-26 17:25:37] 2025-11-26 16:24:34,003 | INFO     | mean x: 1764166353.0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,003 | INFO     | mean y: 2911291.413127413
[2025-11-26 17:25:37] 2025-11-26 16:24:34,003 | INFO     | intersect: -43144510899.023415
[2025-11-26 17:25:37] 2025-11-26 16:24:34,003 | INFO     | chi2: 2.8924878713967974
[2025-11-26 17:25:37] 2025-11-26 16:24:34,004 | INFO     | sum of square deviations: 5081276667.5
[2025-11-26 17:25:37] 2025-11-26 16:24:34,004 | INFO     | sum of deviations: 173143057763.00003
[2025-11-26 17:25:37] 2025-11-26 16:24:34,005 | INFO     | mean x: 1764166200.5
[2025-11-26 17:25:37] 2025-11-26 16:24:34,005 | INFO     | mean y: 2931709.031496063
[2025-11-26 17:25:37] 2025-11-26 16:24:34,005 | INFO     | intersect: -60110529994.479225
[2025-11-26 17:25:37] 2025-11-26 16:24:34,005 | INFO     | chi2: 1.460781610857645
[2025-11-26 17:25:37] 2025-11-26 16:24:34,005 | INFO     | current chi2=1.460781610857645 (change=49.497398924192346 %)
[2025-11-26 17:25:37] 2025-11-26 16:24:34,005 | INFO     | sum of square deviations: 4787066500.0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,006 | INFO     | sum of deviations: 167305998202.00006
[2025-11-26 17:25:37] 2025-11-26 16:24:34,006 | INFO     | mean x: 1764166048.0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,006 | INFO     | mean y: 2928683.3413654617
[2025-11-26 17:25:37] 2025-11-26 16:24:34,006 | INFO     | intersect: -61653946493.704445
[2025-11-26 17:25:37] 2025-11-26 16:24:34,006 | INFO     | chi2: 1.457076934143233
[2025-11-26 17:25:37] 2025-11-26 16:24:34,006 | INFO     | current chi2=1.457076934143233 (change=0.253609210772918 %)
[2025-11-26 17:25:37] 2025-11-26 16:24:34,006 | INFO     | right removable region: 248
[2025-11-26 17:25:37] 2025-11-26 16:24:34,006 | INFO     | sum of square deviations: 5081276667.5
[2025-11-26 17:25:37] 2025-11-26 16:24:34,007 | INFO     | sum of deviations: 83041231656.50002
[2025-11-26 17:25:37] 2025-11-26 16:24:34,007 | INFO     | mean x: 1764166505.5
[2025-11-26 17:25:37] 2025-11-26 16:24:34,007 | INFO     | mean y: 2935380.7913385825
[2025-11-26 17:25:37] 2025-11-26 16:24:34,007 | INFO     | intersect: -28828118122.13497
[2025-11-26 17:25:37] 2025-11-26 16:24:34,008 | INFO     | chi2: 1.5194745291433494
[2025-11-26 17:25:37] 2025-11-26 16:24:34,008 | INFO     | current chi2=1.5194745291433494 (change=47.46824890195349 %)
[2025-11-26 17:25:37] 2025-11-26 16:24:34,008 | INFO     | sum of square deviations: 4787066500.0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,009 | INFO     | sum of deviations: 69385991835.99995
[2025-11-26 17:25:37] 2025-11-26 16:24:34,009 | INFO     | mean x: 1764166658.0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,009 | INFO     | mean y: 2942453.5220883535
[2025-11-26 17:25:37] 2025-11-26 16:24:34,009 | INFO     | intersect: -25567718269.350956
[2025-11-26 17:25:37] 2025-11-26 16:24:34,009 | INFO     | chi2: 1.4929668309120558
[2025-11-26 17:25:37] 2025-11-26 16:24:34,009 | INFO     | current chi2=1.4929668309120558 (change=1.7445306073171258 %)
[2025-11-26 17:25:37] 2025-11-26 16:24:34,009 | INFO     | left removable region: 20
[2025-11-26 17:25:37] 2025-11-26 16:24:34,009 | INFO     | sum of square deviations: 3675146117.0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,010 | INFO     | sum of deviations: 84297425792.99998
[2025-11-26 17:25:37] 2025-11-26 16:24:34,010 | INFO     | mean x: 1764166627.5
[2025-11-26 17:25:37] 2025-11-26 16:24:34,010 | INFO     | mean y: 2973933.3421052634
[2025-11-26 17:25:37] 2025-11-26 16:24:34,010 | INFO     | intersect: -40462003684.898346
[2025-11-26 17:25:37] 2025-11-26 16:24:34,010 | INFO     | chi2: 0.02559444072531328
[2025-11-26 17:25:37] 2025-11-26 16:24:34,010 | INFO     | current memory leak: 22.94 B/s (using 228 data points, chi2=0.03)
[2025-11-26 17:25:37] 2025-11-26 16:24:34,010 | INFO     | could have reported an average CPU frequency of 2806 MHz (12 samples)
[2025-11-26 17:25:37] 2025-11-26 16:24:34,011 | INFO     | ..............................
[2025-11-26 17:25:37] 2025-11-26 16:24:34,011 | INFO     | . Timing measurements:
[2025-11-26 17:25:37] 2025-11-26 16:24:34,011 | INFO     | . get job = 0 s
[2025-11-26 17:25:37] 2025-11-26 16:24:34,011 | INFO     | . initial setup = 1 s
[2025-11-26 17:25:37] 2025-11-26 16:24:34,011 | INFO     | . payload setup = 2 s
[2025-11-26 17:25:37] 2025-11-26 16:24:34,011 | INFO     | . stage-in = 0 s
[2025-11-26 17:25:37] 2025-11-26 16:24:34,011 | INFO     | . payload execution = 15782 s
[2025-11-26 17:25:37] 2025-11-26 16:24:34,011 | INFO     | . stage-out = 1 s
[2025-11-26 17:25:37] 2025-11-26 16:24:34,011 | INFO     | . log creation = 0 s
[2025-11-26 17:25:37] 2025-11-26 16:24:34,011 | INFO     | ..............................
[2025-11-26 17:25:37] 2025-11-26 16:24:34,059 | INFO     | 
[2025-11-26 17:25:37] 2025-11-26 16:24:34,059 | INFO     | job summary report
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | --------------------------------------------------
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | PanDA job id: 6895346075
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | task id: 47556137
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | errors: (none)
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | pilot state: finished 
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | transexitcode: 0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | exeerrorcode: 0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | exeerrordiag: 
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | exitcode: 0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | exitmsg: OK
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | cpuconsumptiontime: 121487 s
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | nevents: 1000
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | neventsw: 0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | pid: 20708
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | pgrp: 20708
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | corecount: 8
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | event service: False
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | sizes: {0: 2283436, 1: 2284418, 3: 2284680, 11: 2284708, 15789: 2316957, 15790: 2325981, 15791: 2326165, 15796: 2326411}
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | --------------------------------------------------
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | 
[2025-11-26 17:25:37] 2025-11-26 16:24:34,060 | INFO     | executing command: ls -lF /tmp/job_10926064/atlas/pilot/slots/0
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,070 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:25:37] 2025-11-26 16:24:34,071 | INFO     | job 6895346075 has completed (purged errors)
[2025-11-26 17:25:37] 2025-11-26 16:24:34,071 | INFO     | overall cleanup function is called
[2025-11-26 17:25:37] 2025-11-26 16:24:35,078 | INFO     | --- collectZombieJob: --- 10, [20708]
[2025-11-26 17:25:37] 2025-11-26 16:24:35,078 | INFO     | zombie collector waiting for pid 20708
[2025-11-26 17:25:37] 2025-11-26 16:24:35,078 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:25:37] 2025-11-26 16:24:35,078 | INFO     | collected zombie processes
[2025-11-26 17:25:37] 2025-11-26 16:24:35,078 | INFO     | will attempt to kill all subprocesses of pid=20708
[2025-11-26 17:25:37] 2025-11-26 16:24:35,178 | INFO     | process IDs to be killed: [20708] (in reverse order)
[2025-11-26 17:25:37] 2025-11-26 16:24:35,215 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:25:37] 2025-11-26 16:24:35,215 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:25:37] 2025-11-26 16:24:35,218 | INFO     | did not find any defunct processes belonging to 20708
[2025-11-26 17:25:37] 2025-11-26 16:24:35,221 | INFO     | did not find any defunct processes belonging to 20708
[2025-11-26 17:25:37] 2025-11-26 16:24:35,222 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:25:37] 2025-11-26 16:24:35,222 | INFO     | ready for new job
[2025-11-26 17:25:37] 2025-11-26 16:24:35,222 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:25:37] 2025-11-26 16:24:35,223 | INFO     | ***************************************
[2025-11-26 17:25:37] 2025-11-26 16:24:35,223 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:25:37] 2025-11-26 16:24:35,223 | INFO     | ***************************************
[2025-11-26 17:25:37] 2025-11-26 16:24:35,223 | INFO     | 
[2025-11-26 17:25:37] 2025-11-26 16:24:35,236 | INFO     | architecture information:
[2025-11-26 17:25:37] 2025-11-26 16:24:35,237 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:25:37] 2025-11-26 16:24:35,242 | INFO     | cat /etc/os-release:
[2025-11-26 17:25:37] NAME="CentOS Linux"
[2025-11-26 17:25:37] VERSION="7 (Core)"
[2025-11-26 17:25:37] ID="centos"
[2025-11-26 17:25:37] ID_LIKE="rhel fedora"
[2025-11-26 17:25:37] VERSION_ID="7"
[2025-11-26 17:25:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:25:37] ANSI_COLOR="0;31"
[2025-11-26 17:25:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:25:37] HOME_URL="https://www.centos.org/"
[2025-11-26 17:25:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:25:37] 
[2025-11-26 17:25:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:25:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:25:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:25:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:25:37] 
[2025-11-26 17:25:37] 2025-11-26 16:24:35,243 | INFO     | ***************************************
[2025-11-26 17:25:37] 2025-11-26 16:24:35,745 | INFO     | executing command: df -mP /tmp/job_10926064/atlas/pilot/slots/0
[2025-11-26 17:25:37] 2025-11-26 16:24:35,750 | INFO     | sufficient remaining disk space (221621780480 B)
[2025-11-26 17:25:37] 2025-11-26 16:24:35,750 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:25:37] 2025-11-26 16:24:35,750 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:25:37] 2025-11-26 16:24:35,751 | INFO     | update_server=False
[2025-11-26 17:25:37] 2025-11-26 16:24:35,751 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:25:37] 2025-11-26 16:24:35,751 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:25:37] 2025-11-26 16:24:35,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:25:37] 2025-11-26 16:24:35,887 | INFO     | all data control threads have been joined
[2025-11-26 17:25:37] 2025-11-26 16:24:35,934 | INFO     | all job control threads have been joined
[2025-11-26 17:25:37] 2025-11-26 16:24:36,047 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 17:25:37] 2025-11-26 16:24:36,047 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 17:25:37] 2025-11-26 16:24:36,047 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:25:37] 2025-11-26 16:24:36,047 | INFO     | will abort loop
[2025-11-26 17:25:37] 2025-11-26 16:24:36,304 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:25:37] 2025-11-26 16:24:36,756 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:36,756 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:36,769 | INFO     | all payload control threads have been joined
[2025-11-26 17:25:37] 2025-11-26 16:24:36,871 | INFO     | [job] validate thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:36,892 | INFO     | [data] control thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:36,939 | INFO     | [job] control thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:37,031 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:37,052 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:37,383 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:37,456 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:37,681 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:37,774 | INFO     | [payload] control thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:37,812 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:37,874 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:38,310 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:39,756 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:24:46,019 | INFO     | job.realtimelogging is not enabled
[2025-11-26 17:25:37] 2025-11-26 16:24:47,024 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:25:37] 2025-11-26 16:25:05,581 | INFO     | PID=31396 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 17:25:37] 2025-11-26 16:25:05,581 | INFO     | .. there are 3 such processes running
[2025-11-26 17:25:37] 2025-11-26 16:25:05,581 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:25:37] 2025-11-26 16:25:05,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:25:37] 2025-11-26 16:25:05,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:25:37] 2025-11-26 16:25:31,910 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:25:37] 2025-11-26 16:25:32,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-11-26 17:25:37] 2025-11-26 16:25:33,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:25:37] 2025-11-26 16:25:33,722 | INFO     | [monitor] control thread has ended
[2025-11-26 17:25:37] 2025-11-26 16:25:37,778 | INFO     | all workflow threads have been joined
[2025-11-26 17:25:37] 2025-11-26 16:25:37,778 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:25:37] 2025-11-26 16:25:37,778 | INFO     | traces error code: 0
[2025-11-26 17:25:37] 2025-11-26 16:25:37,778 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:25:37] 2025-11-26 16:25:37,836 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:25:37] 2025-11-26 16:25:37,837 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:25:37] 2025-11-26 16:25:37,839 [wrapper] pilotpid: 31396
[2025-11-26 17:25:37] 2025-11-26 16:25:37,840 [wrapper] Pilot exit status: 0
[2025-11-26 17:25:37] 2025-11-26 16:25:37,844 [wrapper] pandaids: 6895346075
[2025-11-26 17:25:37] 2025-11-26 16:25:37,867 [wrapper] cleanup supervisor_pilot  6301 31397
[2025-11-26 17:25:37] 2025-11-26 16:25:37,869 [wrapper] Test setup, not cleaning
[2025-11-26 17:25:37] 2025-11-26 16:25:37,870 [wrapper] apfmon messages muted
[2025-11-26 17:25:37] 2025-11-26 16:25:37,871 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:25:37] 2025-11-26 16:25:37,872 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:25:37]  *** Error codes and diagnostics ***
[2025-11-26 17:25:37]     "exeErrorCode": 0,
[2025-11-26 17:25:37]     "exeErrorDiag": "",
[2025-11-26 17:25:37]     "pilotErrorCode": 0,
[2025-11-26 17:25:37]     "pilotErrorDiag": "",
[2025-11-26 17:25:37]  *** Listing of results directory ***
[2025-11-26 17:25:37] total 1309700
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user    576529 Nov 22 18:43 pilot3.tar.gz
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user      5112 Nov 22 18:49 queuedata.json
[2025-11-26 17:25:37] -rwx------ 1 mf493845 unix-user     36292 Nov 22 18:49 runpilot2-wrapper.sh
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user       100 Nov 26 11:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:25:37] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 26 11:16 run_atlas
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user       105 Nov 26 11:16 job.xml
[2025-11-26 17:25:37] -rw-r--r-- 2 mf493845 unix-user 410053950 Nov 26 13:01 EVNT.47483658._000453.pool.root.1
[2025-11-26 17:25:37] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 26 13:01 start_atlas.sh
[2025-11-26 17:25:37] drwxrwx--x 2 mf493845 unix-user       100 Nov 26 13:01 shared
[2025-11-26 17:25:37] -rw-r--r-- 2 mf493845 unix-user    590099 Nov 26 13:01 input.tar.gz
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user      6390 Nov 26 13:01 init_data.xml
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user         0 Nov 26 13:01 boinc_setup_complete
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user      8192 Nov 26 13:01 boinc_mmap_file
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user         0 Nov 26 13:01 boinc_lockfile
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user      2785 Nov 26 13:01 pandaJob.out
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user    991830 Nov 26 13:01 agis_schedconf.cvmfs.json
[2025-11-26 17:25:37] drwx------ 5 mf493845 unix-user       440 Nov 26 13:01 pilot3
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user 919529660 Nov 26 17:24 HITS.47556137._004489.pool.root.1
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user        95 Nov 26 17:24 pilot_heartbeat.json
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user      1025 Nov 26 17:24 memory_monitor_summary.json
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user   1516240 Nov 26 17:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user   1555270 Nov 26 17:24 log.47556137._004489.job.log.tgz.1
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user      8569 Nov 26 17:24 heartbeat.json
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user      5093 Nov 26 17:25 pilotlog.txt
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user   2273302 Nov 26 17:25 log.47556137._004489.job.log.1
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user       353 Nov 26 17:25 output.list
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user       620 Nov 26 17:25 runtime_log
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user   3850240 Nov 26 17:25 result.tar.gz
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user      9221 Nov 26 17:25 runtime_log.err
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user       650 Nov 26 17:25 QMLODmou6g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxJKKDmV1jSVm.diag
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user     21676 Nov 26 17:25 stderr.txt
[2025-11-26 17:25:37] HITS file was successfully produced:
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user 919529660 Nov 26 17:24 shared/HITS.pool.root.1
[2025-11-26 17:25:37]  *** Contents of shared directory: ***
[2025-11-26 17:25:37] total 1302780
[2025-11-26 17:25:37] -rw-r--r-- 2 mf493845 unix-user 410053950 Nov 26 13:01 ATLAS.root_0
[2025-11-26 17:25:37] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 26 13:01 start_atlas.sh
[2025-11-26 17:25:37] -rw-r--r-- 2 mf493845 unix-user    590099 Nov 26 13:01 input.tar.gz
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user 919529660 Nov 26 17:24 HITS.pool.root.1
[2025-11-26 17:25:37] -rw------- 1 mf493845 unix-user   3850240 Nov 26 17:25 result.tar.gz
17:25:39 (25015): run_atlas exited; CPU time 121656.215114
17:25:39 (25015): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN