Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:19:05 (689760): wrapper (7.7.26015): starting
09:19:05 (689760): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 09:19:05] Arguments: --nthreads 8
[2025-11-26 09:19:05] Threads: 8
[2025-11-26 09:19:05] Checking for CVMFS
[2025-11-26 09:19:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:19:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:19:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:19:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:19:07] 2.13.3.0 10079 28464 398712 153324 4 25 32850269 32935937 64904 16776704 0 311989347 99.796 159668420 29074 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 09:19:07] CVMFS is ok
[2025-11-26 09:19:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:19:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:19:07] Further information can be found at the LHC@home message board.
[2025-11-26 09:19:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:19:07] Checking for apptainer binary...
[2025-11-26 09:19:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:19:07] Running /usr/bin/apptainer --version
[2025-11-26 09:19:08] apptainer version 1.4.4-1.el9
[2025-11-26 09:19:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:19:08] lc-12-33.aglt2.org
[2025-11-26 09:19:08] apptainer works
[2025-11-26 09:19:08] Set ATHENA_PROC_NUMBER=8
[2025-11-26 09:19:08] Set ATHENA_CORE_NUMBER=8
[2025-11-26 09:19:09] Starting ATLAS job with PandaID=6896243354
[2025-11-26 09:19:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:19:43]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:19:43] 2025-11-27 12:18:50,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:19:43] 2025-11-27 12:18:51,559 | INFO     | time since job start (79117s) is within the limit (172800.0s)
[2025-11-27 07:19:43] 2025-11-27 12:18:52,795 | INFO     | monitor loop #4536: job 0:6896243354 is in state 'finished'
[2025-11-27 07:19:43] 2025-11-27 12:18:52,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:19:43] 2025-11-27 12:18:53,566 | INFO     | time since job start (79119s) is within the limit (172800.0s)
[2025-11-27 07:19:43] 2025-11-27 12:18:55,300 | INFO     | monitor loop #4537: job 0:6896243354 is in state 'finished'
[2025-11-27 07:19:43] 2025-11-27 12:18:55,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:19:43] 2025-11-27 12:18:55,575 | INFO     | time since job start (79121s) is within the limit (172800.0s)
[2025-11-27 07:19:43] 2025-11-27 12:18:57,604 | INFO     | time since job start (79123s) is within the limit (172800.0s)
[2025-11-27 07:19:43] 2025-11-27 12:18:57,805 | INFO     | monitor loop #4538: job 0:6896243354 is in state 'finished'
[2025-11-27 07:19:43] 2025-11-27 12:18:57,806 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:19:43] 2025-11-27 12:18:59,634 | INFO     | time since job start (79125s) is within the limit (172800.0s)
[2025-11-27 07:19:43] 2025-11-27 12:19:00,310 | INFO     | monitor loop #4539: job 0:6896243354 is in state 'finished'
[2025-11-27 07:19:43] 2025-11-27 12:19:00,311 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:19:43] 2025-11-27 12:19:01,641 | INFO     | time since job start (79127s) is within the limit (172800.0s)
[2025-11-27 07:19:43] 2025-11-27 12:19:02,367 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 07:19:43] 2025-11-27 12:19:02,373 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2826.859635416669
[2025-11-27 07:19:43] 2025-11-27 12:19:02,441 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6896243354/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:19:43] 2025-11-27 12:19:02,443 | INFO     | extracted standard info from prmon json
[2025-11-27 07:19:43] 2025-11-27 12:19:02,443 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:19:43] 2025-11-27 12:19:02,443 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:19:43] 2025-11-27 12:19:02,464 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:19:43] 2025-11-27 12:19:02,466 | INFO     | sum of square deviations: 673418372564.2317
[2025-11-27 07:19:43] 2025-11-27 12:19:02,498 | INFO     | sum of deviations: 3269225602743.527
[2025-11-27 07:19:43] 2025-11-27 12:19:02,498 | INFO     | mean x: 1764206422.123552
[2025-11-27 07:19:43] 2025-11-27 12:19:02,498 | INFO     | mean y: 2906100.746718147
[2025-11-27 07:19:43] 2025-11-27 12:19:02,499 | INFO     | intersect: -8561738166.039676
[2025-11-27 07:19:43] 2025-11-27 12:19:02,500 | INFO     | chi2: 18.905698699833533
[2025-11-27 07:19:43] 2025-11-27 12:19:02,502 | INFO     | sum of square deviations: 665648633435.3951
[2025-11-27 07:19:43] 2025-11-27 12:19:02,533 | INFO     | sum of deviations: 3736934913880.148
[2025-11-27 07:19:43] 2025-11-27 12:19:02,534 | INFO     | mean x: 1764206269.627907
[2025-11-27 07:19:43] 2025-11-27 12:19:02,534 | INFO     | mean y: 2915278.696124031
[2025-11-27 07:19:43] 2025-11-27 12:19:02,534 | INFO     | intersect: -9901294950.406136
[2025-11-27 07:19:43] 2025-11-27 12:19:02,535 | INFO     | chi2: 15.239569594894345
[2025-11-27 07:19:43] 2025-11-27 12:19:02,536 | INFO     | current chi2=15.239569594894345 (change=19.391661546851314 %)
[2025-11-27 07:19:43] 2025-11-27 12:19:02,536 | INFO     | right removable region: 1289
[2025-11-27 07:19:43] 2025-11-27 12:19:02,537 | INFO     | sum of square deviations: 665647745885.3958
[2025-11-27 07:19:43] 2025-11-27 12:19:02,568 | INFO     | sum of deviations: 2777068965597.1797
[2025-11-27 07:19:43] 2025-11-27 12:19:02,568 | INFO     | mean x: 1764206574.627907
[2025-11-27 07:19:43] 2025-11-27 12:19:02,568 | INFO     | mean y: 2915757.2170542637
[2025-11-27 07:19:43] 2025-11-27 12:19:02,569 | INFO     | intersect: -7357318477.160088
[2025-11-27 07:19:43] 2025-11-27 12:19:02,570 | INFO     | chi2: 15.296876375459775
[2025-11-27 07:19:43] 2025-11-27 12:19:02,570 | INFO     | current chi2=15.296876375459775 (change=19.088542463683368 %)
[2025-11-27 07:19:43] 2025-11-27 12:19:02,570 | INFO     | left removable region: 10
[2025-11-27 07:19:43] 2025-11-27 12:19:02,572 | INFO     | sum of square deviations: 648764308763.777
[2025-11-27 07:19:43] 2025-11-27 12:19:02,602 | INFO     | sum of deviations: 2924518930286.337
[2025-11-27 07:19:43] 2025-11-27 12:19:02,602 | INFO     | mean x: 1764206544.1376076
[2025-11-27 07:19:43] 2025-11-27 12:19:02,602 | INFO     | mean y: 2934823.3901485535
[2025-11-27 07:19:43] 2025-11-27 12:19:02,603 | INFO     | intersect: -7949807591.0266285
[2025-11-27 07:19:43] 2025-11-27 12:19:02,604 | INFO     | chi2: 8.5730504361094
[2025-11-27 07:19:43] 2025-11-27 12:19:02,604 | INFO     | current memory leak: 4.51 B/s (using 1279 data points, chi2=8.57)
[2025-11-27 07:19:43] 2025-11-27 12:19:02,606 | INFO     | could have reported an average CPU frequency of 2772 MHz (47 samples)
[2025-11-27 07:19:43] 2025-11-27 12:19:02,606 | INFO     | ..............................
[2025-11-27 07:19:43] 2025-11-27 12:19:02,606 | INFO     | . Timing measurements:
[2025-11-27 07:19:43] 2025-11-27 12:19:02,606 | INFO     | . get job = 0 s
[2025-11-27 07:19:43] 2025-11-27 12:19:02,606 | INFO     | . initial setup = 5 s
[2025-11-27 07:19:43] 2025-11-27 12:19:02,606 | INFO     | . payload setup = 42 s
[2025-11-27 07:19:43] 2025-11-27 12:19:02,606 | INFO     | . stage-in = 0 s
[2025-11-27 07:19:43] 2025-11-27 12:19:02,606 | INFO     | . payload execution = 78984 s
[2025-11-27 07:19:43] 2025-11-27 12:19:02,607 | INFO     | . stage-out = 7 s
[2025-11-27 07:19:43] 2025-11-27 12:19:02,607 | INFO     | . log creation = 2 s
[2025-11-27 07:19:43] 2025-11-27 12:19:02,607 | INFO     | ..............................
[2025-11-27 07:19:43] 2025-11-27 12:19:03,378 | INFO     | 
[2025-11-27 07:19:43] 2025-11-27 12:19:03,379 | INFO     | job summary report
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | --------------------------------------------------
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | PanDA job id: 6896243354
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | task id: 47556149
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | errors: (none)
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | pilot state: finished 
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | transexitcode: 0
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | exeerrorcode: 0
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | exeerrordiag: 
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | exitcode: 0
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | exitmsg: OK
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | cpuconsumptiontime: 257457 s
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | nevents: 1000
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | neventsw: 0
[2025-11-27 07:19:43] 2025-11-27 12:19:03,380 | INFO     | pid: 752745
[2025-11-27 07:19:43] 2025-11-27 12:19:03,381 | INFO     | pgrp: 752745
[2025-11-27 07:19:43] 2025-11-27 12:19:03,381 | INFO     | corecount: 8
[2025-11-27 07:19:43] 2025-11-27 12:19:03,381 | INFO     | event service: False
[2025-11-27 07:19:43] 2025-11-27 12:19:03,381 | INFO     | sizes: {0: 2284037, 1: 2284292, 2: 2284320, 13: 2284320, 24: 2284376, 32: 2284666, 35: 2284822, 79031: 2343971, 79039: 2352965, 79042: 2353021, 79061: 2353267}
[2025-11-27 07:19:43] 2025-11-27 12:19:03,381 | INFO     | --------------------------------------------------
[2025-11-27 07:19:43] 2025-11-27 12:19:03,381 | INFO     | 
[2025-11-27 07:19:43] 2025-11-27 12:19:03,381 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 07:19:43] 2025-11-27 12:19:03,484 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,484 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,484 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,484 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:19:43] 2025-11-27 12:19:03,485 | INFO     | job 6896243354 has completed (purged errors)
[2025-11-27 07:19:43] 2025-11-27 12:19:03,486 | INFO     | overall cleanup function is called
[2025-11-27 07:19:43] 2025-11-27 12:19:04,554 | INFO     | --- collectZombieJob: --- 10, [752745]
[2025-11-27 07:19:43] 2025-11-27 12:19:04,555 | INFO     | zombie collector waiting for pid 752745
[2025-11-27 07:19:43] 2025-11-27 12:19:04,555 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:19:43] 2025-11-27 12:19:04,555 | INFO     | collected zombie processes
[2025-11-27 07:19:43] 2025-11-27 12:19:04,555 | INFO     | will attempt to kill all subprocesses of pid=752745
[2025-11-27 07:19:43] 2025-11-27 12:19:05,422 | INFO     | PID=715688 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 07:19:43] 2025-11-27 12:19:05,423 | INFO     | .. there are 83 such processes running
[2025-11-27 07:19:43] 2025-11-27 12:19:05,984 | INFO     | process IDs to be killed: [752745] (in reverse order)
[2025-11-27 07:19:43] 2025-11-27 12:19:06,552 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:19:43] 2025-11-27 12:19:06,552 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:19:43] 2025-11-27 12:19:06,615 | INFO     | did not find any defunct processes belonging to 752745
[2025-11-27 07:19:43] 2025-11-27 12:19:06,651 | INFO     | did not find any defunct processes belonging to 752745
[2025-11-27 07:19:43] 2025-11-27 12:19:06,653 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:19:43] 2025-11-27 12:19:06,654 | INFO     | ready for new job
[2025-11-27 07:19:43] 2025-11-27 12:19:06,654 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:19:43] 2025-11-27 12:19:06,660 | INFO     | ***************************************
[2025-11-27 07:19:43] 2025-11-27 12:19:06,660 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:19:43] 2025-11-27 12:19:06,660 | INFO     | ***************************************
[2025-11-27 07:19:43] 2025-11-27 12:19:06,660 | INFO     | 
[2025-11-27 07:19:43] 2025-11-27 12:19:06,666 | INFO     | architecture information:
[2025-11-27 07:19:43] 2025-11-27 12:19:06,669 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:19:43] 2025-11-27 12:19:06,735 | INFO     | cat /etc/os-release:
[2025-11-27 07:19:43] NAME="CentOS Linux"
[2025-11-27 07:19:43] VERSION="7 (Core)"
[2025-11-27 07:19:43] ID="centos"
[2025-11-27 07:19:43] ID_LIKE="rhel fedora"
[2025-11-27 07:19:43] VERSION_ID="7"
[2025-11-27 07:19:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:19:43] ANSI_COLOR="0;31"
[2025-11-27 07:19:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:19:43] HOME_URL="https://www.centos.org/"
[2025-11-27 07:19:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:19:43] 
[2025-11-27 07:19:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:19:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:19:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:19:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:19:43] 
[2025-11-27 07:19:43] 2025-11-27 12:19:06,735 | INFO     | ***************************************
[2025-11-27 07:19:43] 2025-11-27 12:19:07,260 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 07:19:43] 2025-11-27 12:19:07,346 | INFO     | sufficient remaining disk space (65385005056 B)
[2025-11-27 07:19:43] 2025-11-27 12:19:07,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:19:43] 2025-11-27 12:19:07,346 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:19:43] 2025-11-27 12:19:07,346 | INFO     | update_server=False
[2025-11-27 07:19:43] 2025-11-27 12:19:07,346 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:19:43] 2025-11-27 12:19:07,352 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:19:43] 2025-11-27 12:19:07,352 | INFO     | aborting loop
[2025-11-27 07:19:43] 2025-11-27 12:19:07,353 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:19:43] 2025-11-27 12:19:07,841 | INFO     | all data control threads have been joined
[2025-11-27 07:19:43] 2025-11-27 12:19:08,000 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:19:43] 2025-11-27 12:19:08,033 | INFO     | all payload control threads have been joined
[2025-11-27 07:19:43] 2025-11-27 12:19:08,352 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:08,357 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:08,474 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:08,546 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:19:43] 2025-11-27 12:19:08,624 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:08,745 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:08,856 | INFO     | [data] control thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:08,939 | INFO     | all job control threads have been joined
[2025-11-27 07:19:43] 2025-11-27 12:19:09,005 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:09,039 | INFO     | [payload] control thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:09,363 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:09,408 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:09,519 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:09,575 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:09,623 | INFO     | [job] validate thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:09,765 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:09,951 | INFO     | [job] control thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:12,560 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:19:43] 2025-11-27 12:19:36,396 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:19:43] 2025-11-27 12:19:36,881 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140422315308864)>', '<ExcThread(monitor, started 140421581752064)>']
[2025-11-27 07:19:43] 2025-11-27 12:19:38,637 | INFO     | PID=715688 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 07:19:43] 2025-11-27 12:19:38,637 | INFO     | .. there are 83 such processes running
[2025-11-27 07:19:43] 2025-11-27 12:19:38,637 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:19:43] 2025-11-27 12:19:38,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:19:43] 2025-11-27 12:19:38,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:19:43] 2025-11-27 12:19:38,637 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:19:43] 2025-11-27 12:19:38,637 | INFO     | [monitor] control thread has ended
[2025-11-27 07:19:43] 2025-11-27 12:19:41,907 | INFO     | all workflow threads have been joined
[2025-11-27 07:19:43] 2025-11-27 12:19:41,907 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:19:43] 2025-11-27 12:19:41,908 | INFO     | traces error code: 0
[2025-11-27 07:19:43] 2025-11-27 12:19:41,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:19:43] 2025-11-27 12:19:42,153 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:19:43] 2025-11-27 12:19:42,158 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:19:43] 2025-11-27 12:19:42,186 [wrapper] pilotpid: 715688
[2025-11-27 07:19:43] 2025-11-27 12:19:42,245 [wrapper] Pilot exit status: 0
[2025-11-27 07:19:43] 2025-11-27 12:19:42,309 [wrapper] pandaids: 6896243354
[2025-11-27 07:19:43] 2025-11-27 12:19:42,472 [wrapper] cleanup supervisor_pilot 2075795 715689
[2025-11-27 07:19:43] 2025-11-27 12:19:42,476 [wrapper] Test setup, not cleaning
[2025-11-27 07:19:43] 2025-11-27 12:19:42,478 [wrapper] apfmon messages muted
[2025-11-27 07:19:43] 2025-11-27 12:19:42,481 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:19:43] 2025-11-27 12:19:42,483 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:19:43]  *** Error codes and diagnostics ***
[2025-11-27 07:19:43]     "exeErrorCode": 0,
[2025-11-27 07:19:43]     "exeErrorDiag": "",
[2025-11-27 07:19:43]     "pilotErrorCode": 0,
[2025-11-27 07:19:43]     "pilotErrorDiag": "",
[2025-11-27 07:19:43]  *** Listing of results directory ***
[2025-11-27 07:19:43] total 1317572
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 16:08 pilot3.tar.gz
[2025-11-27 07:19:43] -rwx------. 1 boincer umatlas     36292 Nov 24 16:46 runpilot2-wrapper.sh
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 16:46 queuedata.json
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas       100 Nov 26 09:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:19:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 09:19 run_atlas
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas       105 Nov 26 09:19 job.xml
[2025-11-27 07:19:43] -rw-r--r--. 2 boincer umatlas 410877864 Nov 26 09:19 EVNT.47483658._001418.pool.root.1
[2025-11-27 07:19:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:19 start_atlas.sh
[2025-11-27 07:19:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 09:19 shared
[2025-11-27 07:19:43] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 09:19 input.tar.gz
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas         0 Nov 26 09:19 boinc_lockfile
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 09:19 pandaJob.out
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas        57 Nov 26 09:19 setup.sh.local
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas    992360 Nov 26 09:20 agis_schedconf.cvmfs.json
[2025-11-27 07:19:43] drwx------. 5 boincer umatlas      4096 Nov 26 09:20 pilot3
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas       533 Nov 27 06:45 boinc_task_state.xml
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas      6884 Nov 27 07:09 init_data.xml
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas 910369850 Nov 27 07:16 HITS.47556149._004043.pool.root.1
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas      1060 Nov 27 07:18 memory_monitor_summary.json
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas   1516240 Nov 27 07:18 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas   2339471 Nov 27 07:18 log.47556149._004043.job.log.tgz.1
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas        95 Nov 27 07:18 pilot_heartbeat.json
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas      7945 Nov 27 07:19 heartbeat.json
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 07:19 boinc_mmap_file
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas        29 Nov 27 07:19 wrapper_checkpoint.txt
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas      4823 Nov 27 07:19 pilotlog.txt
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas   9673183 Nov 27 07:19 log.47556149._004043.job.log.1
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas       353 Nov 27 07:19 output.list
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas       620 Nov 27 07:19 runtime_log
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas  12032000 Nov 27 07:19 result.tar.gz
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas       660 Nov 27 07:19 SpbKDm3Yth8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4vLKDmTwZwLm.diag
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 07:19 runtime_log.err
[2025-11-27 07:19:43] -rw-r--r--. 1 boincer umatlas     21877 Nov 27 07:19 stderr.txt
[2025-11-27 07:19:43] HITS file was successfully produced:
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas 910369850 Nov 27 07:16 shared/HITS.pool.root.1
[2025-11-27 07:19:43]  *** Contents of shared directory: ***
[2025-11-27 07:19:43] total 1302640
[2025-11-27 07:19:43] -rw-r--r--. 2 boincer umatlas 410877864 Nov 26 09:19 ATLAS.root_0
[2025-11-27 07:19:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 09:19 start_atlas.sh
[2025-11-27 07:19:43] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 09:19 input.tar.gz
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas 910369850 Nov 27 07:16 HITS.pool.root.1
[2025-11-27 07:19:43] -rw-------. 1 boincer umatlas  12032000 Nov 27 07:19 result.tar.gz
07:20:05 (689760): run_atlas exited; CPU time 262305.111452
07:20:05 (689760): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN