Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:30:47 (5958): wrapper (7.7.26015): starting
02:30:47 (5958): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 02:30:47] Arguments: --nthreads 8
[2025-11-26 02:30:47] Threads: 8
[2025-11-26 02:30:47] Checking for CVMFS
[2025-11-26 02:30:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 02:30:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 02:30:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 02:30:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 02:30:48] 2.11.2.0 2466 117372 133364 153314 3 82 11675193 18432001 1885 130560 0 83357534 99.973 5067929 28282 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 02:30:48] CVMFS is ok
[2025-11-26 02:30:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 02:30:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 02:30:48] Further information can be found at the LHC@home message board.
[2025-11-26 02:30:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 02:30:48] Checking for apptainer binary...
[2025-11-26 02:30:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 02:30:48] Running /usr/bin/apptainer --version
[2025-11-26 02:30:48] apptainer version 1.3.2-1.el7
[2025-11-26 02:30:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 02:30:49] c-206-20.aglt2.org
[2025-11-26 02:30:49] apptainer works
[2025-11-26 02:30:49] Set ATHENA_PROC_NUMBER=8
[2025-11-26 02:30:49] Set ATHENA_CORE_NUMBER=8
[2025-11-26 02:30:49] Starting ATLAS job with PandaID=6896296553
[2025-11-26 02:30:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:41:21]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:41:21] 2025-11-27 02:40:48,371 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2472.375
[2025-11-26 21:41:21] 2025-11-27 02:40:48,375 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896296553/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:41:21] 2025-11-27 02:40:48,376 | INFO     | extracted standard info from prmon json
[2025-11-26 21:41:21] 2025-11-27 02:40:48,376 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:41:21] 2025-11-27 02:40:48,376 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:41:21] 2025-11-27 02:40:48,402 | INFO     | monitor loop #4940: job 0:6896296553 is in state 'finished'
[2025-11-26 21:41:21] 2025-11-27 02:40:48,407 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:41:21] 2025-11-27 02:40:48,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:41:21] 2025-11-27 02:40:48,409 | INFO     | sum of square deviations: 448606525160.1502
[2025-11-26 21:41:21] 2025-11-27 02:40:48,454 | INFO     | sum of deviations: 2157305014403.0977
[2025-11-26 21:41:21] 2025-11-27 02:40:48,454 | INFO     | mean x: 1764176750.6136162
[2025-11-26 21:41:21] 2025-11-27 02:40:48,454 | INFO     | mean y: 2866799.890362511
[2025-11-26 21:41:21] 2025-11-27 02:40:48,454 | INFO     | intersect: -8480887084.50408
[2025-11-26 21:41:21] 2025-11-27 02:40:48,456 | INFO     | chi2: 5.281243356920939
[2025-11-26 21:41:21] 2025-11-27 02:40:48,458 | INFO     | sum of square deviations: 442683304835.7588
[2025-11-26 21:41:21] 2025-11-27 02:40:48,500 | INFO     | sum of deviations: 2499661467423.3003
[2025-11-26 21:41:21] 2025-11-27 02:40:48,500 | INFO     | mean x: 1764176598.116341
[2025-11-26 21:41:21] 2025-11-27 02:40:48,500 | INFO     | mean y: 2875609.3641207814
[2025-11-26 21:41:21] 2025-11-27 02:40:48,501 | INFO     | intersect: -9958747555.253412
[2025-11-26 21:41:21] 2025-11-27 02:40:48,502 | INFO     | chi2: 2.5941748681578307
[2025-11-26 21:41:21] 2025-11-27 02:40:48,502 | INFO     | current chi2=2.5941748681578307 (change=50.87946733683029 %)
[2025-11-26 21:41:21] 2025-11-27 02:40:48,504 | INFO     | sum of square deviations: 436812320458.82404
[2025-11-26 21:41:21] 2025-11-27 02:40:48,545 | INFO     | sum of deviations: 2575577567849.095
[2025-11-26 21:41:21] 2025-11-27 02:40:48,545 | INFO     | mean x: 1764176445.617306
[2025-11-26 21:41:21] 2025-11-27 02:40:48,546 | INFO     | mean y: 2877576.953612846
[2025-11-26 21:41:21] 2025-11-27 02:40:48,546 | INFO     | intersect: -10399240372.208033
[2025-11-26 21:41:21] 2025-11-27 02:40:48,547 | INFO     | chi2: 2.2844882143765637
[2025-11-26 21:41:21] 2025-11-27 02:40:48,548 | INFO     | current chi2=2.2844882143765637 (change=11.937770949156599 %)
[2025-11-26 21:41:21] 2025-11-27 02:40:48,548 | INFO     | right removable region: 1120
[2025-11-26 21:41:21] 2025-11-27 02:40:48,550 | INFO     | sum of square deviations: 442682881495.7586
[2025-11-26 21:41:21] 2025-11-27 02:40:48,591 | INFO     | sum of deviations: 1863989232462.381
[2025-11-26 21:41:21] 2025-11-27 02:40:48,592 | INFO     | mean x: 1764176903.116341
[2025-11-26 21:41:21] 2025-11-27 02:40:48,592 | INFO     | mean y: 2874342.5008880994
[2025-11-26 21:41:21] 2025-11-27 02:40:48,592 | INFO     | intersect: -7425483267.48091
[2025-11-26 21:41:21] 2025-11-27 02:40:48,594 | INFO     | chi2: 3.2379710624374867
[2025-11-26 21:41:21] 2025-11-27 02:40:48,594 | INFO     | current chi2=3.2379710624374867 (change=38.68922820619115 %)
[2025-11-26 21:41:21] 2025-11-27 02:40:48,595 | INFO     | sum of square deviations: 436811679470.58856
[2025-11-26 21:41:21] 2025-11-27 02:40:48,637 | INFO     | sum of deviations: 1790966440690.0764
[2025-11-26 21:41:21] 2025-11-27 02:40:48,637 | INFO     | mean x: 1764177055.6181982
[2025-11-26 21:41:21] 2025-11-27 02:40:48,638 | INFO     | mean y: 2876238.9277430866
[2025-11-26 21:41:21] 2025-11-27 02:40:48,638 | INFO     | intersect: -7230405402.893293
[2025-11-26 21:41:21] 2025-11-27 02:40:48,639 | INFO     | chi2: 3.1895763143671414
[2025-11-26 21:41:21] 2025-11-27 02:40:48,640 | INFO     | current chi2=3.1895763143671414 (change=1.494601005912467 %)
[2025-11-26 21:41:21] 2025-11-27 02:40:48,640 | INFO     | left removable region: 20
[2025-11-26 21:41:21] 2025-11-27 02:40:48,641 | INFO     | sum of square deviations: 412719940523.43414
[2025-11-26 21:41:21] 2025-11-27 02:40:48,681 | INFO     | sum of deviations: 2114939122633.6658
[2025-11-26 21:41:21] 2025-11-27 02:40:48,682 | INFO     | mean x: 1764177025.1263638
[2025-11-26 21:41:21] 2025-11-27 02:40:48,682 | INFO     | mean y: 2889808.9736363636
[2025-11-26 21:41:21] 2025-11-27 02:40:48,682 | INFO     | intersect: -9037446369.014763
[2025-11-26 21:41:21] 2025-11-27 02:40:48,684 | INFO     | chi2: 0.15665729537819648
[2025-11-26 21:41:21] 2025-11-27 02:40:48,684 | INFO     | current memory leak: 5.12 B/s (using 1100 data points, chi2=0.16)
[2025-11-26 21:41:21] 2025-11-27 02:40:48,685 | INFO     | could have reported an average CPU frequency of 2624 MHz (41 samples)
[2025-11-26 21:41:21] 2025-11-27 02:40:48,685 | INFO     | ..............................
[2025-11-26 21:41:21] 2025-11-27 02:40:48,686 | INFO     | . Timing measurements:
[2025-11-26 21:41:21] 2025-11-27 02:40:48,686 | INFO     | . get job = 0 s
[2025-11-26 21:41:21] 2025-11-27 02:40:48,686 | INFO     | . initial setup = 2 s
[2025-11-26 21:41:21] 2025-11-27 02:40:48,686 | INFO     | . payload setup = 5 s
[2025-11-26 21:41:21] 2025-11-27 02:40:48,686 | INFO     | . stage-in = 0 s
[2025-11-26 21:41:21] 2025-11-27 02:40:48,686 | INFO     | . payload execution = 68953 s
[2025-11-26 21:41:21] 2025-11-27 02:40:48,687 | INFO     | . stage-out = 3 s
[2025-11-26 21:41:21] 2025-11-27 02:40:48,687 | INFO     | . log creation = 0 s
[2025-11-26 21:41:21] 2025-11-27 02:40:48,687 | INFO     | ..............................
[2025-11-26 21:41:21] 2025-11-27 02:40:48,845 | INFO     | 
[2025-11-26 21:41:21] 2025-11-27 02:40:48,846 | INFO     | job summary report
[2025-11-26 21:41:21] 2025-11-27 02:40:48,846 | INFO     | --------------------------------------------------
[2025-11-26 21:41:21] 2025-11-27 02:40:48,846 | INFO     | PanDA job id: 6896296553
[2025-11-26 21:41:21] 2025-11-27 02:40:48,846 | INFO     | task id: 47556149
[2025-11-26 21:41:21] 2025-11-27 02:40:48,846 | INFO     | errors: (none)
[2025-11-26 21:41:21] 2025-11-27 02:40:48,846 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:41:21] 2025-11-27 02:40:48,847 | INFO     | pilot state: finished 
[2025-11-26 21:41:21] 2025-11-27 02:40:48,847 | INFO     | transexitcode: 0
[2025-11-26 21:41:21] 2025-11-27 02:40:48,847 | INFO     | exeerrorcode: 0
[2025-11-26 21:41:21] 2025-11-27 02:40:48,847 | INFO     | exeerrordiag: 
[2025-11-26 21:41:21] 2025-11-27 02:40:48,847 | INFO     | exitcode: 0
[2025-11-26 21:41:21] 2025-11-27 02:40:48,847 | INFO     | exitmsg: OK
[2025-11-26 21:41:21] 2025-11-27 02:40:48,848 | INFO     | cpuconsumptiontime: 533056 s
[2025-11-26 21:41:21] 2025-11-27 02:40:48,848 | INFO     | nevents: 1000
[2025-11-26 21:41:21] 2025-11-27 02:40:48,848 | INFO     | neventsw: 0
[2025-11-26 21:41:21] 2025-11-27 02:40:48,848 | INFO     | pid: 16213
[2025-11-26 21:41:21] 2025-11-27 02:40:48,848 | INFO     | pgrp: 16213
[2025-11-26 21:41:21] 2025-11-27 02:40:48,848 | INFO     | corecount: 8
[2025-11-26 21:41:21] 2025-11-27 02:40:48,849 | INFO     | event service: False
[2025-11-26 21:41:21] 2025-11-27 02:40:48,849 | INFO     | sizes: {0: 2284314, 4: 2284576, 11: 2284604, 68962: 2340751, 68963: 2340750, 68968: 2349800, 68970: 2349984, 68974: 2350326}
[2025-11-26 21:41:21] 2025-11-27 02:40:48,849 | INFO     | --------------------------------------------------
[2025-11-26 21:41:21] 2025-11-27 02:40:48,849 | INFO     | 
[2025-11-26 21:41:21] 2025-11-27 02:40:48,849 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 21:41:21] 2025-11-27 02:40:48,868 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,868 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,868 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,869 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,869 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,869 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,869 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,869 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,869 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,870 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,870 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,870 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,871 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,871 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,871 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,871 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:41:21] 2025-11-27 02:40:48,871 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,871 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:41:21] 2025-11-27 02:40:48,872 | INFO     | job 6896296553 has completed (purged errors)
[2025-11-26 21:41:21] 2025-11-27 02:40:48,872 | INFO     | overall cleanup function is called
[2025-11-26 21:41:21] 2025-11-27 02:40:49,889 | INFO     | --- collectZombieJob: --- 10, [16213]
[2025-11-26 21:41:21] 2025-11-27 02:40:49,889 | INFO     | zombie collector waiting for pid 16213
[2025-11-26 21:41:21] 2025-11-27 02:40:49,889 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:41:21] 2025-11-27 02:40:49,889 | INFO     | collected zombie processes
[2025-11-26 21:41:21] 2025-11-27 02:40:49,889 | INFO     | will attempt to kill all subprocesses of pid=16213
[2025-11-26 21:41:21] 2025-11-27 02:40:50,028 | INFO     | process IDs to be killed: [16213] (in reverse order)
[2025-11-26 21:41:21] 2025-11-27 02:40:50,086 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:41:21] 2025-11-27 02:40:50,086 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:41:21] 2025-11-27 02:40:50,089 | INFO     | did not find any defunct processes belonging to 16213
[2025-11-26 21:41:21] 2025-11-27 02:40:50,091 | INFO     | did not find any defunct processes belonging to 16213
[2025-11-26 21:41:21] 2025-11-27 02:40:50,092 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:41:21] 2025-11-27 02:40:50,092 | INFO     | ready for new job
[2025-11-26 21:41:21] 2025-11-27 02:40:50,093 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:41:21] 2025-11-27 02:40:50,096 | INFO     | ***************************************
[2025-11-26 21:41:21] 2025-11-27 02:40:50,096 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:41:21] 2025-11-27 02:40:50,096 | INFO     | ***************************************
[2025-11-26 21:41:21] 2025-11-27 02:40:50,096 | INFO     | 
[2025-11-26 21:41:21] 2025-11-27 02:40:50,097 | INFO     | architecture information:
[2025-11-26 21:41:21] 2025-11-27 02:40:50,098 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:41:21] 2025-11-27 02:40:50,107 | INFO     | cat /etc/os-release:
[2025-11-26 21:41:21] NAME="CentOS Linux"
[2025-11-26 21:41:21] VERSION="7 (Core)"
[2025-11-26 21:41:21] ID="centos"
[2025-11-26 21:41:21] ID_LIKE="rhel fedora"
[2025-11-26 21:41:21] VERSION_ID="7"
[2025-11-26 21:41:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:41:21] ANSI_COLOR="0;31"
[2025-11-26 21:41:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:41:21] HOME_URL="https://www.centos.org/"
[2025-11-26 21:41:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:41:21] 
[2025-11-26 21:41:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:41:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:41:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:41:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:41:21] 
[2025-11-26 21:41:21] 2025-11-27 02:40:50,108 | INFO     | ***************************************
[2025-11-26 21:41:21] 2025-11-27 02:40:50,610 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 21:41:21] 2025-11-27 02:40:50,623 | INFO     | sufficient remaining disk space (26282557440 B)
[2025-11-26 21:41:21] 2025-11-27 02:40:50,623 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:41:21] 2025-11-27 02:40:50,623 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:41:21] 2025-11-27 02:40:50,623 | INFO     | update_server=False
[2025-11-26 21:41:21] 2025-11-27 02:40:50,623 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:41:21] 2025-11-27 02:40:50,624 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:41:21] 2025-11-27 02:40:50,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:41:21] 2025-11-27 02:40:50,715 | INFO     | all job control threads have been joined
[2025-11-26 21:41:21] 2025-11-27 02:40:50,807 | INFO     | all data control threads have been joined
[2025-11-26 21:41:21] 2025-11-27 02:40:50,913 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 21:41:21] 2025-11-27 02:40:50,913 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 21:41:21] 2025-11-27 02:40:50,914 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:41:21] 2025-11-27 02:40:50,914 | INFO     | will abort loop
[2025-11-26 21:41:21] 2025-11-27 02:40:50,943 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:41:21] 2025-11-27 02:40:51,206 | INFO     | all payload control threads have been joined
[2025-11-26 21:41:21] 2025-11-27 02:40:51,629 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:51,629 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:51,657 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:51,720 | INFO     | [job] control thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:51,812 | INFO     | [data] control thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:51,917 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:51,919 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:51,977 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:52,211 | INFO     | [payload] control thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:52,629 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:52,661 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:52,902 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:52,965 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:53,004 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:53,031 | INFO     | [job] validate thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:54,117 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:41:21] 2025-11-27 02:40:54,949 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:41:21] 2025-11-27 02:40:56,973 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139929104529216)>', '<ExcThread(monitor, started 139928675538688)>']
[2025-11-26 21:41:21] 2025-11-27 02:41:01,999 | INFO     | all workflow threads have been joined
[2025-11-26 21:41:21] 2025-11-27 02:41:01,999 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:41:21] 2025-11-27 02:41:01,999 | INFO     | traces error code: 0
[2025-11-26 21:41:21] 2025-11-27 02:41:02,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:41:21] 2025-11-27 02:41:21,161 | INFO     | PID=9647 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 21:41:21] 2025-11-27 02:41:21,162 | INFO     | .. there are 3 such processes running
[2025-11-26 21:41:21] 2025-11-27 02:41:21,162 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:41:21] 2025-11-27 02:41:21,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:41:21] 2025-11-27 02:41:21,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:41:21] 2025-11-27 02:41:21,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:41:21] 2025-11-27 02:41:21,163 | INFO     | [monitor] control thread has ended
[2025-11-26 21:41:21] 2025-11-27 02:41:21,250 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:41:21] 2025-11-27 02:41:21,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:41:21] 2025-11-27 02:41:21,254 [wrapper] pilotpid: 9647
[2025-11-26 21:41:21] 2025-11-27 02:41:21,256 [wrapper] Pilot exit status: 0
[2025-11-26 21:41:21] 2025-11-27 02:41:21,265 [wrapper] pandaids: 6896296553
[2025-11-26 21:41:21] 2025-11-27 02:41:21,292 [wrapper] cleanup supervisor_pilot 25773 9648
[2025-11-26 21:41:21] 2025-11-27 02:41:21,298 [wrapper] Test setup, not cleaning
[2025-11-26 21:41:21] 2025-11-27 02:41:21,300 [wrapper] apfmon messages muted
[2025-11-26 21:41:21] 2025-11-27 02:41:21,302 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:41:21] 2025-11-27 02:41:21,304 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:41:21]  *** Error codes and diagnostics ***
[2025-11-26 21:41:21]     "exeErrorCode": 0,
[2025-11-26 21:41:21]     "exeErrorDiag": "",
[2025-11-26 21:41:21]     "pilotErrorCode": 0,
[2025-11-26 21:41:21]     "pilotErrorDiag": "",
[2025-11-26 21:41:21]  *** Listing of results directory ***
[2025-11-26 21:41:21] total 1314012
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 18:07 pilot3.tar.gz
[2025-11-26 21:41:21] -rwx------ 1 boincer umatlas     36292 Nov 24 18:51 runpilot2-wrapper.sh
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 18:51 queuedata.json
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas       100 Nov 26 02:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:41:21] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 02:30 run_atlas
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas       105 Nov 26 02:30 job.xml
[2025-11-26 21:41:21] -rw-r--r-- 2 boincer umatlas 410795249 Nov 26 02:30 EVNT.47483658._001447.pool.root.1
[2025-11-26 21:41:21] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 02:30 start_atlas.sh
[2025-11-26 21:41:21] drwxrwx--x 2 boincer umatlas      4096 Nov 26 02:30 shared
[2025-11-26 21:41:21] -rw-r--r-- 2 boincer umatlas    590098 Nov 26 02:30 input.tar.gz
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas         0 Nov 26 02:30 boinc_lockfile
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 02:30 pandaJob.out
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas        57 Nov 26 02:30 setup.sh.local
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas    991877 Nov 26 02:30 agis_schedconf.cvmfs.json
[2025-11-26 21:41:21] drwx------ 5 boincer umatlas      4096 Nov 26 02:31 pilot3
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas       533 Nov 26 21:29 boinc_task_state.xml
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas 907139829 Nov 26 21:40 HITS.47556149._004340.pool.root.1
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas        95 Nov 26 21:40 pilot_heartbeat.json
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas      5954 Nov 26 21:40 init_data.xml
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas      1067 Nov 26 21:40 memory_monitor_summary.json
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas   1516240 Nov 26 21:40 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas   2298587 Nov 26 21:40 log.47556149._004340.job.log.tgz.1
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas      8663 Nov 26 21:40 heartbeat.json
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas        29 Nov 26 21:41 wrapper_checkpoint.txt
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 21:41 boinc_mmap_file
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas       819 Nov 26 21:41 pilotlog.txt
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas   9547972 Nov 26 21:41 log.47556149._004340.job.log.1
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas       353 Nov 26 21:41 output.list
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas       620 Nov 26 21:41 runtime_log
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas  11868160 Nov 26 21:41 result.tar.gz
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 21:41 runtime_log.err
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas       668 Nov 26 21:41 mljNDm3Vvh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2EJKDm8ab5xn.diag
[2025-11-26 21:41:21] -rw-r--r-- 1 boincer umatlas     21316 Nov 26 21:41 stderr.txt
[2025-11-26 21:41:21] HITS file was successfully produced:
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas 907139829 Nov 26 21:40 shared/HITS.pool.root.1
[2025-11-26 21:41:21]  *** Contents of shared directory: ***
[2025-11-26 21:41:21] total 1299240
[2025-11-26 21:41:21] -rw-r--r-- 2 boincer umatlas 410795249 Nov 26 02:30 ATLAS.root_0
[2025-11-26 21:41:21] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 02:30 start_atlas.sh
[2025-11-26 21:41:21] -rw-r--r-- 2 boincer umatlas    590098 Nov 26 02:30 input.tar.gz
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas 907139829 Nov 26 21:40 HITS.pool.root.1
[2025-11-26 21:41:21] -rw------- 1 boincer umatlas  11868160 Nov 26 21:41 result.tar.gz
21:41:23 (5958): run_atlas exited; CPU time 531840.479843
21:41:23 (5958): called boinc_finish(0)

</stderr_txt>
]]>

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