Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
10:25:54 (1786832): wrapper (7.7.26015): starting
10:25:54 (1786832): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 10:25:54] Arguments: --nthreads 12
[2025-11-26 10:25:54] Threads: 12
[2025-11-26 10:25:54] Checking for CVMFS
[2025-11-26 10:25:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 10:25:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 10:25:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 10:25:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 10:25:54] 2.13.2.0 3658817 2042 64220 153328 3 81 12366573 16777216 1038 130560 0 2731826 99.993 82566 1277 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-26 10:25:54] CVMFS is ok
[2025-11-26 10:25:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 10:25:54] Checking for apptainer binary...
[2025-11-26 10:25:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 10:25:54] Running /usr/bin/apptainer --version
[2025-11-26 10:25:54] apptainer version 1.3.0-bp160.1.36
[2025-11-26 10:25:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 10:25:54] boinc-runner
[2025-11-26 10:25:54] apptainer works
[2025-11-26 10:25:54] Set ATHENA_PROC_NUMBER=12
[2025-11-26 10:25:54] Set ATHENA_CORE_NUMBER=12
[2025-11-26 10:25:54] Starting ATLAS job with PandaID=6896766455
[2025-11-26 10:25:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:13:23]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:13:23] 2025-11-26 19:12:28,026 | INFO     | monitor loop #756: job 0:6896766455 is in state 'finished'
[2025-11-26 13:13:23] 2025-11-26 19:12:28,026 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:13:23] 2025-11-26 19:12:28,059 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 13:13:23] 2025-11-26 19:12:28,061 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4249.558875000001
[2025-11-26 13:13:23] 2025-11-26 19:12:28,064 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6896766455/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:13:23] 2025-11-26 19:12:28,065 | INFO     | extracted standard info from prmon json
[2025-11-26 13:13:23] 2025-11-26 19:12:28,065 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:13:23] 2025-11-26 19:12:28,065 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:13:23] 2025-11-26 19:12:28,066 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:13:23] 2025-11-26 19:12:28,066 | INFO     | sum of square deviations: 1367709365.0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,067 | INFO     | sum of deviations: 29203770801.000015
[2025-11-26 13:13:23] 2025-11-26 19:12:28,067 | INFO     | mean x: 1764179351.5
[2025-11-26 13:13:23] 2025-11-26 19:12:28,067 | INFO     | mean y: 3510216.3414634145
[2025-11-26 13:13:23] 2025-11-26 19:12:28,067 | INFO     | intersect: -37665815410.49801
[2025-11-26 13:13:23] 2025-11-26 19:12:28,067 | INFO     | chi2: 3.7323936134999682
[2025-11-26 13:13:23] 2025-11-26 19:12:28,067 | INFO     | sum of square deviations: 1246386160.0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | sum of deviations: 78195646240.0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | mean x: 1764179199.0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | mean y: 3571303.893081761
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | intersect: -110677321164.43355
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | chi2: 1.6724953851737807
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | current chi2=1.6724953851737807 (change=55.18973724731472 %)
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | sum of square deviations: 1132458442.5
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | sum of deviations: 73539840638.0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | mean x: 1764179046.5
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | mean y: 3565041.4285714286
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | intersect: -114559090034.99274
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | chi2: 1.6721647351195748
[2025-11-26 13:13:23] 2025-11-26 19:12:28,068 | INFO     | current chi2=1.6721647351195748 (change=0.019769863470900085 %)
[2025-11-26 13:13:23] 2025-11-26 19:12:28,069 | INFO     | right removable region: 153
[2025-11-26 13:13:23] 2025-11-26 19:12:28,069 | INFO     | sum of square deviations: 1246386160.0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,069 | INFO     | sum of deviations: -10150759839.000013
[2025-11-26 13:13:23] 2025-11-26 19:12:28,069 | INFO     | mean x: 1764179504.0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,069 | INFO     | mean y: 3559072.540880503
[2025-11-26 13:13:23] 2025-11-26 19:12:28,069 | INFO     | intersect: 14371307233.343758
[2025-11-26 13:13:23] 2025-11-26 19:12:28,069 | INFO     | chi2: 2.1565559244631607
[2025-11-26 13:13:23] 2025-11-26 19:12:28,069 | INFO     | current chi2=2.1565559244631607 (change=42.22056546600671 %)
[2025-11-26 13:13:23] 2025-11-26 19:12:28,069 | INFO     | sum of square deviations: 1132458442.5
[2025-11-26 13:13:23] 2025-11-26 19:12:28,070 | INFO     | sum of deviations: -15675647477.499992
[2025-11-26 13:13:23] 2025-11-26 19:12:28,070 | INFO     | mean x: 1764179656.5
[2025-11-26 13:13:23] 2025-11-26 19:12:28,070 | INFO     | mean y: 3566443.6948051946
[2025-11-26 13:13:23] 2025-11-26 19:12:28,070 | INFO     | intersect: 24423586944.59811
[2025-11-26 13:13:23] 2025-11-26 19:12:28,070 | INFO     | chi2: 2.1434105344638725
[2025-11-26 13:13:23] 2025-11-26 19:12:28,070 | INFO     | current chi2=2.1434105344638725 (change=0.6095547929071438 %)
[2025-11-26 13:13:23] 2025-11-26 19:12:28,070 | INFO     | left removable region: 20
[2025-11-26 13:13:23] 2025-11-26 19:12:28,070 | INFO     | sum of square deviations: 729472282.0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,070 | INFO     | sum of deviations: 21054533202.000004
[2025-11-26 13:13:23] 2025-11-26 19:12:28,070 | INFO     | mean x: 1764179626.0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | mean y: 3639744.203007519
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | intersect: -50915331992.55853
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | chi2: 0.029073087678901755
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | current memory leak: 28.86 B/s (using 133 data points, chi2=0.03)
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | could have reported an average CPU frequency of 4078 MHz (9 samples)
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | ..............................
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | . Timing measurements:
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | . get job = 0 s
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | . initial setup = 2 s
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | . payload setup = 2 s
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | . stage-in = 0 s
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | . payload execution = 9961 s
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | . stage-out = 0 s
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | . log creation = 0 s
[2025-11-26 13:13:23] 2025-11-26 19:12:28,071 | INFO     | ..............................
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | 
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | job summary report
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | --------------------------------------------------
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | PanDA job id: 6896766455
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | task id: 47556185
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | errors: (none)
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | pilot state: finished 
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | transexitcode: 0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | exeerrorcode: 0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | exeerrordiag: 
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | exitcode: 0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | exitmsg: OK
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | cpuconsumptiontime: 115162 s
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | nevents: 1000
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | neventsw: 0
[2025-11-26 13:13:23] 2025-11-26 19:12:28,349 | INFO     | pid: 1797613
[2025-11-26 13:13:23] 2025-11-26 19:12:28,350 | INFO     | pgrp: 1797613
[2025-11-26 13:13:23] 2025-11-26 19:12:28,350 | INFO     | corecount: 12
[2025-11-26 13:13:23] 2025-11-26 19:12:28,350 | INFO     | event service: False
[2025-11-26 13:13:23] 2025-11-26 19:12:28,350 | INFO     | sizes: {0: 2284312, 2: 2284574, 11: 2284602, 9967: 2314284, 9968: 2323278, 9969: 2323334, 9974: 2323772}
[2025-11-26 13:13:23] 2025-11-26 19:12:28,350 | INFO     | --------------------------------------------------
[2025-11-26 13:13:23] 2025-11-26 19:12:28,350 | INFO     | 
[2025-11-26 13:13:23] 2025-11-26 19:12:28,350 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-11-26 13:13:23] 2025-11-26 19:12:28,362 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,362 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,362 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,362 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,362 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,362 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,362 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | job 6896766455 has completed (purged errors)
[2025-11-26 13:13:23] 2025-11-26 19:12:28,363 | INFO     | overall cleanup function is called
[2025-11-26 13:13:23] 2025-11-26 19:12:29,377 | INFO     | --- collectZombieJob: --- 10, [1797613]
[2025-11-26 13:13:23] 2025-11-26 19:12:29,377 | INFO     | zombie collector waiting for pid 1797613
[2025-11-26 13:13:23] 2025-11-26 19:12:29,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:13:23] 2025-11-26 19:12:29,377 | INFO     | collected zombie processes
[2025-11-26 13:13:23] 2025-11-26 19:12:29,377 | INFO     | will attempt to kill all subprocesses of pid=1797613
[2025-11-26 13:13:23] 2025-11-26 19:12:29,437 | INFO     | process IDs to be killed: [1797613] (in reverse order)
[2025-11-26 13:13:23] 2025-11-26 19:12:29,469 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:13:23] 2025-11-26 19:12:29,470 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:13:23] 2025-11-26 19:12:29,472 | INFO     | did not find any defunct processes belonging to 1797613
[2025-11-26 13:13:23] 2025-11-26 19:12:29,474 | INFO     | did not find any defunct processes belonging to 1797613
[2025-11-26 13:13:23] 2025-11-26 19:12:29,474 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:13:23] 2025-11-26 19:12:29,474 | INFO     | ready for new job
[2025-11-26 13:13:23] 2025-11-26 19:12:29,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:13:23] 2025-11-26 19:12:29,476 | INFO     | ***************************************
[2025-11-26 13:13:23] 2025-11-26 19:12:29,476 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:13:23] 2025-11-26 19:12:29,476 | INFO     | ***************************************
[2025-11-26 13:13:23] 2025-11-26 19:12:29,476 | INFO     | 
[2025-11-26 13:13:23] 2025-11-26 19:12:29,476 | INFO     | architecture information:
[2025-11-26 13:13:23] 2025-11-26 19:12:29,477 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:13:23] 2025-11-26 19:12:29,483 | INFO     | cat /etc/os-release:
[2025-11-26 13:13:23] NAME="CentOS Linux"
[2025-11-26 13:13:23] VERSION="7 (Core)"
[2025-11-26 13:13:23] ID="centos"
[2025-11-26 13:13:23] ID_LIKE="rhel fedora"
[2025-11-26 13:13:23] VERSION_ID="7"
[2025-11-26 13:13:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:13:23] ANSI_COLOR="0;31"
[2025-11-26 13:13:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:13:23] HOME_URL="https://www.centos.org/"
[2025-11-26 13:13:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:13:23] 
[2025-11-26 13:13:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:13:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:13:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:13:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:13:23] 
[2025-11-26 13:13:23] 2025-11-26 19:12:29,483 | INFO     | ***************************************
[2025-11-26 13:13:23] 2025-11-26 19:12:29,985 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-11-26 13:13:23] 2025-11-26 19:12:29,994 | INFO     | sufficient remaining disk space (3845202640896 B)
[2025-11-26 13:13:23] 2025-11-26 19:12:29,994 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:13:23] 2025-11-26 19:12:29,995 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:13:23] 2025-11-26 19:12:29,995 | INFO     | update_server=False
[2025-11-26 13:13:23] 2025-11-26 19:12:29,995 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:13:23] 2025-11-26 19:12:29,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:13:23] 2025-11-26 19:12:29,995 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:13:23] 2025-11-26 19:12:29,995 | INFO     | aborting loop
[2025-11-26 13:13:23] 2025-11-26 19:12:30,166 | INFO     | all data control threads have been joined
[2025-11-26 13:13:23] 2025-11-26 19:12:30,610 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:13:23] 2025-11-26 19:12:30,999 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:31,000 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:31,000 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:31,050 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:31,075 | INFO     | all job control threads have been joined
[2025-11-26 13:13:23] 2025-11-26 19:12:31,149 | INFO     | all payload control threads have been joined
[2025-11-26 13:13:23] 2025-11-26 19:12:31,171 | INFO     | [data] control thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:31,438 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:31,475 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:32,080 | INFO     | [job] control thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:32,123 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:32,154 | INFO     | [payload] control thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:32,301 | INFO     | [job] validate thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:32,400 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:32,405 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:32,615 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:33,140 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:13:23] 2025-11-26 19:12:37,146 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:12:40,339 | INFO     | job.realtimelogging is not enabled
[2025-11-26 13:13:23] 2025-11-26 19:12:41,344 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:13:23] 2025-11-26 19:13:00,443 | INFO     | PID=1790731 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:13:23] 2025-11-26 19:13:00,443 | INFO     | .. there are 2 such processes running
[2025-11-26 13:13:23] 2025-11-26 19:13:00,443 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:13:23] 2025-11-26 19:13:00,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:13:23] 2025-11-26 19:13:00,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:13:23] 2025-11-26 19:13:17,633 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:13:23] 2025-11-26 19:13:18,005 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361219888960)>', '<ExcThread(monitor, started 140360579794688)>']
[2025-11-26 13:13:23] 2025-11-26 19:13:18,533 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:13:23] 2025-11-26 19:13:18,533 | INFO     | [monitor] control thread has ended
[2025-11-26 13:13:23] 2025-11-26 19:13:23,030 | INFO     | all workflow threads have been joined
[2025-11-26 13:13:23] 2025-11-26 19:13:23,030 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:13:23] 2025-11-26 19:13:23,030 | INFO     | traces error code: 0
[2025-11-26 13:13:23] 2025-11-26 19:13:23,030 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:13:23] 2025-11-26 19:13:23,096 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:13:23] 2025-11-26 19:13:23,097 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:13:23] 2025-11-26 19:13:23,099 [wrapper] pilotpid: 1790731
[2025-11-26 13:13:23] 2025-11-26 19:13:23,101 [wrapper] Pilot exit status: 0
[2025-11-26 13:13:23] 2025-11-26 19:13:23,105 [wrapper] pandaids: 6896766455
[2025-11-26 13:13:23] 2025-11-26 19:13:23,122 [wrapper] cleanup supervisor_pilot 1972444 1790732
[2025-11-26 13:13:23] 2025-11-26 19:13:23,124 [wrapper] Test setup, not cleaning
[2025-11-26 13:13:23] 2025-11-26 19:13:23,125 [wrapper] apfmon messages muted
[2025-11-26 13:13:23] 2025-11-26 19:13:23,126 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:13:23] 2025-11-26 19:13:23,127 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:13:23]  *** Error codes and diagnostics ***
[2025-11-26 13:13:23]     "exeErrorCode": 0,
[2025-11-26 13:13:23]     "exeErrorDiag": "",
[2025-11-26 13:13:23]     "pilotErrorCode": 0,
[2025-11-26 13:13:23]     "pilotErrorDiag": "",
[2025-11-26 13:13:23]  *** Listing of results directory ***
[2025-11-26 13:13:23] total 1298964
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc    576529 Nov 25 03:44 pilot3.tar.gz
[2025-11-26 13:13:23] -rwx------. 1 boinc boinc     36292 Nov 25 04:06 runpilot2-wrapper.sh
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc      5112 Nov 25 04:06 queuedata.json
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc       100 Nov 26 10:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:13:23] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 10:25 run_atlas
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc       105 Nov 26 10:25 job.xml
[2025-11-26 13:13:23] -rw-r--r--. 2 boinc boinc    590100 Nov 26 10:25 input.tar.gz
[2025-11-26 13:13:23] -rw-r--r--. 2 boinc boinc 411344083 Nov 26 10:25 EVNT.47483658._004280.pool.root.1
[2025-11-26 13:13:23] -rw-r--r--. 2 boinc boinc     15847 Nov 26 10:25 start_atlas.sh
[2025-11-26 13:13:23] drwxrwx--x. 1 boinc boinc        76 Nov 26 10:25 shared
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc     10032 Nov 26 10:25 init_data.xml
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc         0 Nov 26 10:25 boinc_setup_complete
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc         0 Nov 26 10:25 boinc_lockfile
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc      2784 Nov 26 10:25 pandaJob.out
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc        63 Nov 26 10:25 setup.sh.local
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc    991545 Nov 26 10:25 agis_schedconf.cvmfs.json
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc   1516240 Nov 26 10:26 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:13:23] drwx------. 1 boinc boinc       414 Nov 26 10:26 pilot3
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc       531 Nov 26 13:07 boinc_task_state.xml
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc 908094729 Nov 26 13:12 HITS.47556185._000432.pool.root.1
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc        95 Nov 26 13:12 pilot_heartbeat.json
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc      1041 Nov 26 13:12 memory_monitor_summary.json
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc   1927009 Nov 26 13:12 log.47556185._000432.job.log.tgz.1
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc      8591 Nov 26 13:12 heartbeat.json
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc        28 Nov 26 13:13 wrapper_checkpoint.txt
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc      8192 Nov 26 13:13 boinc_mmap_file
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc      4897 Nov 26 13:13 pilotlog.txt
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc   1468456 Nov 26 13:13 log.47556185._000432.job.log.1
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc       353 Nov 26 13:13 output.list
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc       620 Nov 26 13:13 runtime_log
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc   3420160 Nov 26 13:13 result.tar.gz
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc      9397 Nov 26 13:13 runtime_log.err
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc       660 Nov 26 13:13 Jp1KDmP74h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyJMKDmKJrA4n.diag
[2025-11-26 13:13:23] -rw-r--r--. 1 boinc boinc     20924 Nov 26 13:13 stderr.txt
[2025-11-26 13:13:23] HITS file was successfully produced:
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc 908094729 Nov 26 13:12 shared/HITS.pool.root.1
[2025-11-26 13:13:23]  *** Contents of shared directory: ***
[2025-11-26 13:13:23] total 1292452
[2025-11-26 13:13:23] -rw-r--r--. 2 boinc boinc    590100 Nov 26 10:25 input.tar.gz
[2025-11-26 13:13:23] -rw-r--r--. 2 boinc boinc 411344083 Nov 26 10:25 ATLAS.root_0
[2025-11-26 13:13:23] -rw-r--r--. 2 boinc boinc     15847 Nov 26 10:25 start_atlas.sh
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc 908094729 Nov 26 13:12 HITS.pool.root.1
[2025-11-26 13:13:23] -rw-------. 1 boinc boinc   3420160 Nov 26 13:13 result.tar.gz
13:13:24 (1786832): run_atlas exited; CPU time 115082.897069
13:13:24 (1786832): called boinc_finish(0)

</stderr_txt>
]]>

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