Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:48:06 (3332100): wrapper (7.7.26015): starting
08:48:06 (3332100): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 08:48:06] Arguments: --nthreads 3
[2025-11-26 08:48:06] Threads: 3
[2025-11-26 08:48:06] Checking for CVMFS
[2025-11-26 08:48:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:48:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:48:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:48:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:48:06] 2.9.2.0 2184780 497 71872 153314 1 88 35575302 36864001 0 130560 0 3417886 99.999 17039 29788 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 08:48:06] CVMFS is ok
[2025-11-26 08:48:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:48:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:48:06] Further information can be found at the LHC@home message board.
[2025-11-26 08:48:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:48:06] Checking for apptainer binary...
[2025-11-26 08:48:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:48:06] Running /usr/bin/apptainer --version
[2025-11-26 08:48:06] apptainer version 1.4.1-1.1
[2025-11-26 08:48:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:48:06] thA335
[2025-11-26 08:48:06] apptainer works
[2025-11-26 08:48:06] Set ATHENA_PROC_NUMBER=3
[2025-11-26 08:48:06] Set ATHENA_CORE_NUMBER=3
[2025-11-26 08:48:06] Starting ATLAS job with PandaID=6896766412
[2025-11-26 08:48:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:52:25]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:52:25] 2025-11-26 07:51:33,169 | INFO     | ***************************************
[2025-11-26 08:52:25] 2025-11-26 07:51:33,672 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 08:52:25] 2025-11-26 07:51:33,686 | INFO     | sufficient remaining disk space (826447757312 B)
[2025-11-26 08:52:25] 2025-11-26 07:51:33,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:52:25] 2025-11-26 07:51:33,686 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:52:25] 2025-11-26 07:51:33,686 | INFO     | update_server=False
[2025-11-26 08:52:25] 2025-11-26 07:51:33,686 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:52:25] 2025-11-26 07:51:33,687 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:52:25] 2025-11-26 07:51:33,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:52:25] 2025-11-26 07:51:33,687 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:52:25] 2025-11-26 07:51:33,687 | INFO     | aborting loop
[2025-11-26 08:52:25] 2025-11-26 07:51:34,452 | INFO     | all data control threads have been joined
[2025-11-26 08:52:25] 2025-11-26 07:51:34,691 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:34,692 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:34,693 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:34,764 | INFO     | all payload control threads have been joined
[2025-11-26 08:52:25] 2025-11-26 07:51:35,117 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:35,285 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:35,377 | INFO     | all job control threads have been joined
[2025-11-26 08:52:25] 2025-11-26 07:51:35,420 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:35,458 | INFO     | [data] control thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:35,637 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:35,693 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:35,770 | INFO     | [payload] control thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:35,788 | INFO     | [job] validate thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:35,870 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:35,931 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:36,139 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:36,383 | INFO     | [job] control thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:51:36,469 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:52:25] 2025-11-26 07:51:40,476 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:52:25] 2025-11-26 07:52:03,929 | INFO     | PID=3335828 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:52:25] 2025-11-26 07:52:03,929 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:52:25] 2025-11-26 07:52:03,929 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:52:25] 2025-11-26 07:52:03,929 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:52:25] 2025-11-26 07:52:19,078 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:52:25] 2025-11-26 07:52:20,326 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140160696153920)>', '<ExcThread(monitor, started 140160075294464)>']
[2025-11-26 08:52:25] 2025-11-26 07:52:21,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:52:25] 2025-11-26 07:52:21,017 | INFO     | [monitor] control thread has ended
[2025-11-26 08:52:25] 2025-11-26 07:52:25,352 | INFO     | all workflow threads have been joined
[2025-11-26 08:52:25] 2025-11-26 07:52:25,353 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:52:25] 2025-11-26 07:52:25,353 | INFO     | traces error code: 0
[2025-11-26 08:52:25] 2025-11-26 07:52:25,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:52:25] 2025-11-26 07:52:25,401 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:52:25] 2025-11-26 07:52:25,404 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:52:25] 2025-11-26 07:52:25,407 [wrapper] pilotpid: 3335828
[2025-11-26 08:52:25] 2025-11-26 07:52:25,410 [wrapper] Pilot exit status: 0
[2025-11-26 08:52:25] 2025-11-26 07:52:25,417 [wrapper] pandaids: 6896766412
[2025-11-26 08:52:25] 2025-11-26 07:52:25,435 [wrapper] cleanup supervisor_pilot 3335834 3335829
[2025-11-26 08:52:25] 2025-11-26 07:52:25,438 [wrapper] Test setup, not cleaning
[2025-11-26 08:52:25] 2025-11-26 07:52:25,441 [wrapper] apfmon messages muted
[2025-11-26 08:52:25] 2025-11-26 07:52:25,444 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:52:25] 2025-11-26 07:52:25,446 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:52:25]  *** Error codes and diagnostics ***
[2025-11-26 08:52:25]     "exeErrorCode": 65,
[2025-11-26 08:52:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 08:52:25]     "pilotErrorCode": 1305,
[2025-11-26 08:52:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 08:52:25]  *** Listing of results directory ***
[2025-11-26 08:52:25] total 403464
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc    576529 Nov 25 10:44 pilot3.tar.gz
[2025-11-26 08:52:25] -rwx------ 1 boinc boinc     36292 Nov 25 10:59 runpilot2-wrapper.sh
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc      5112 Nov 25 10:59 queuedata.json
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc       100 Nov 26 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:52:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 08:48 run_atlas
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc       105 Nov 26 08:48 job.xml
[2025-11-26 08:52:25] -rw-r--r-- 2 boinc boinc 408956967 Nov 26 08:48 EVNT.47483658._004275.pool.root.1
[2025-11-26 08:52:25] -rw-r--r-- 2 boinc boinc    590099 Nov 26 08:48 input.tar.gz
[2025-11-26 08:52:25] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:48 start_atlas.sh
[2025-11-26 08:52:25] drwxrwx--x 2 boinc boinc      4096 Nov 26 08:48 shared
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:48 boinc_setup_complete
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc      6196 Nov 26 08:48 init_data.xml
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:48 boinc_lockfile
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc      2784 Nov 26 08:48 pandaJob.out
[2025-11-26 08:52:25] -rw------- 1 boinc boinc    991877 Nov 26 08:48 agis_schedconf.cvmfs.json
[2025-11-26 08:52:25] -rw------- 1 boinc boinc   1516240 Nov 26 08:48 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:52:25] drwx------ 5 boinc boinc      4096 Nov 26 08:48 pilot3
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc       523 Nov 26 08:49 boinc_task_state.xml
[2025-11-26 08:52:25] -rw------- 1 boinc boinc       947 Nov 26 08:49 memory_monitor_summary.json
[2025-11-26 08:52:25] -rw------- 1 boinc boinc     53826 Nov 26 08:49 log.47556185._000389.job.log.tgz.1
[2025-11-26 08:52:25] -rw------- 1 boinc boinc        95 Nov 26 08:51 pilot_heartbeat.json
[2025-11-26 08:52:25] -rw------- 1 boinc boinc      7750 Nov 26 08:51 heartbeat.json
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc        23 Nov 26 08:52 wrapper_checkpoint.txt
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc      8192 Nov 26 08:52 boinc_mmap_file
[2025-11-26 08:52:25] -rw------- 1 boinc boinc      4752 Nov 26 08:52 pilotlog.txt
[2025-11-26 08:52:25] -rw------- 1 boinc boinc     93457 Nov 26 08:52 log.47556185._000389.job.log.1
[2025-11-26 08:52:25] -rw------- 1 boinc boinc       186 Nov 26 08:52 output.list
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc       620 Nov 26 08:52 runtime_log
[2025-11-26 08:52:25] -rw------- 1 boinc boinc    163840 Nov 26 08:52 result.tar.gz
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc      8744 Nov 26 08:52 runtime_log.err
[2025-11-26 08:52:25] -rw------- 1 boinc boinc       649 Nov 26 08:52 6k8KDmx04h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhPJKDmbYA8Vn.diag
[2025-11-26 08:52:25] -rw-r--r-- 1 boinc boinc      8337 Nov 26 08:52 stderr.txt
[2025-11-26 08:52:25] No HITS result produced
[2025-11-26 08:52:25]  *** Contents of shared directory: ***
[2025-11-26 08:52:25] total 400136
[2025-11-26 08:52:25] -rw-r--r-- 2 boinc boinc 408956967 Nov 26 08:48 ATLAS.root_0
[2025-11-26 08:52:25] -rw-r--r-- 2 boinc boinc    590099 Nov 26 08:48 input.tar.gz
[2025-11-26 08:52:25] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:48 start_atlas.sh
[2025-11-26 08:52:25] -rw------- 1 boinc boinc    163840 Nov 26 08:52 result.tar.gz
08:52:27 (3332100): run_atlas exited; CPU time 31.659008
08:52:27 (3332100): called boinc_finish(0)

</stderr_txt>
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