Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:52:30 (3352950): wrapper (7.7.26015): starting
08:52:30 (3352950): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 08:52:30] Arguments: --nthreads 3
[2025-11-26 08:52:30] Threads: 3
[2025-11-26 08:52:30] Checking for CVMFS
[2025-11-26 08:52:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:52:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:52:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:52:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:52:30] 2.9.2.0 2184780 502 71932 153314 1 88 35575302 36864001 0 130560 0 3480492 99.999 17039 29633 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 08:52:30] CVMFS is ok
[2025-11-26 08:52:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:52:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:52:30] Further information can be found at the LHC@home message board.
[2025-11-26 08:52:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:52:30] Checking for apptainer binary...
[2025-11-26 08:52:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:52:30] Running /usr/bin/apptainer --version
[2025-11-26 08:52:30] apptainer version 1.4.1-1.1
[2025-11-26 08:52:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:52:30] thA335
[2025-11-26 08:52:30] apptainer works
[2025-11-26 08:52:30] Set ATHENA_PROC_NUMBER=3
[2025-11-26 08:52:30] Set ATHENA_CORE_NUMBER=3
[2025-11-26 08:52:30] Starting ATLAS job with PandaID=6896296543
[2025-11-26 08:52:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:56:49]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:56:49] 2025-11-26 07:55:52,418 | INFO     | ***************************************
[2025-11-26 08:56:49] 2025-11-26 07:55:52,418 | INFO     | 
[2025-11-26 08:56:49] 2025-11-26 07:55:52,419 | INFO     | architecture information:
[2025-11-26 08:56:49] 2025-11-26 07:55:52,419 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:56:49] 2025-11-26 07:55:52,429 | INFO     | cat /etc/os-release:
[2025-11-26 08:56:49] NAME="CentOS Linux"
[2025-11-26 08:56:49] VERSION="7 (Core)"
[2025-11-26 08:56:49] ID="centos"
[2025-11-26 08:56:49] ID_LIKE="rhel fedora"
[2025-11-26 08:56:49] VERSION_ID="7"
[2025-11-26 08:56:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:56:49] ANSI_COLOR="0;31"
[2025-11-26 08:56:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:56:49] HOME_URL="https://www.centos.org/"
[2025-11-26 08:56:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:56:49] 
[2025-11-26 08:56:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:56:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:56:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:56:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:56:49] 
[2025-11-26 08:56:49] 2025-11-26 07:55:52,430 | INFO     | ***************************************
[2025-11-26 08:56:49] 2025-11-26 07:55:52,933 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 08:56:49] 2025-11-26 07:55:52,947 | INFO     | sufficient remaining disk space (826444611584 B)
[2025-11-26 08:56:49] 2025-11-26 07:55:52,947 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:56:49] 2025-11-26 07:55:52,947 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:56:49] 2025-11-26 07:55:52,948 | INFO     | update_server=False
[2025-11-26 08:56:49] 2025-11-26 07:55:52,948 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:56:49] 2025-11-26 07:55:52,948 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:56:49] 2025-11-26 07:55:52,948 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:56:49] 2025-11-26 07:55:53,580 | INFO     | all data control threads have been joined
[2025-11-26 08:56:49] 2025-11-26 07:55:53,785 | INFO     | all job control threads have been joined
[2025-11-26 08:56:49] 2025-11-26 07:55:53,830 | INFO     | all payload control threads have been joined
[2025-11-26 08:56:49] 2025-11-26 07:55:53,902 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:56:49] 2025-11-26 07:55:53,902 | INFO     | aborting loop
[2025-11-26 08:56:49] 2025-11-26 07:55:53,954 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:53,954 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,065 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,138 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,139 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,209 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,586 | INFO     | [data] control thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,785 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,790 | INFO     | [job] control thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,820 | INFO     | [job] validate thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,836 | INFO     | [payload] control thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,893 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,907 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,947 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:54,954 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:55:55,502 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:56:49] 2025-11-26 07:55:59,509 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:56:49] 2025-11-26 07:56:23,500 | INFO     | PID=3356674 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:56:49] 2025-11-26 07:56:23,500 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:56:49] 2025-11-26 07:56:23,500 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:56:49] 2025-11-26 07:56:23,500 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:56:49] 2025-11-26 07:56:42,635 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:56:49] 2025-11-26 07:56:43,372 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140539709974336)>', '<ExcThread(monitor, started 140539198412544)>']
[2025-11-26 08:56:49] 2025-11-26 07:56:43,601 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:56:49] 2025-11-26 07:56:43,602 | INFO     | [monitor] control thread has ended
[2025-11-26 08:56:49] 2025-11-26 07:56:48,398 | INFO     | all workflow threads have been joined
[2025-11-26 08:56:49] 2025-11-26 07:56:48,398 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:56:49] 2025-11-26 07:56:48,399 | INFO     | traces error code: 0
[2025-11-26 08:56:49] 2025-11-26 07:56:48,399 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:56:49] 2025-11-26 07:56:48,448 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:56:49] 2025-11-26 07:56:48,451 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:56:49] 2025-11-26 07:56:48,454 [wrapper] pilotpid: 3356674
[2025-11-26 08:56:49] 2025-11-26 07:56:48,456 [wrapper] Pilot exit status: 0
[2025-11-26 08:56:49] 2025-11-26 07:56:48,463 [wrapper] pandaids: 6896296543
[2025-11-26 08:56:49] 2025-11-26 07:56:48,481 [wrapper] cleanup supervisor_pilot 3356680 3356675
[2025-11-26 08:56:49] 2025-11-26 07:56:48,484 [wrapper] Test setup, not cleaning
[2025-11-26 08:56:49] 2025-11-26 07:56:48,487 [wrapper] apfmon messages muted
[2025-11-26 08:56:49] 2025-11-26 07:56:48,489 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:56:49] 2025-11-26 07:56:48,492 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:56:49]  *** Error codes and diagnostics ***
[2025-11-26 08:56:49]     "exeErrorCode": 65,
[2025-11-26 08:56:49]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 08:56:49]     "pilotErrorCode": 1305,
[2025-11-26 08:56:49]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 08:56:49]  *** Listing of results directory ***
[2025-11-26 08:56:49] total 404412
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc    576529 Nov 25 00:07 pilot3.tar.gz
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc      5112 Nov 25 00:27 queuedata.json
[2025-11-26 08:56:49] -rwx------ 1 boinc boinc     36292 Nov 25 00:30 runpilot2-wrapper.sh
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc       100 Nov 26 08:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:56:49] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 08:52 run_atlas
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc       105 Nov 26 08:52 job.xml
[2025-11-26 08:56:49] -rw-r--r-- 2 boinc boinc 409926041 Nov 26 08:52 EVNT.47483658._001446.pool.root.1
[2025-11-26 08:56:49] -rw-r--r-- 2 boinc boinc    590107 Nov 26 08:52 input.tar.gz
[2025-11-26 08:56:49] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:52 start_atlas.sh
[2025-11-26 08:56:49] drwxrwx--x 2 boinc boinc      4096 Nov 26 08:52 shared
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:52 boinc_setup_complete
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc      6196 Nov 26 08:52 init_data.xml
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:52 boinc_lockfile
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc      2785 Nov 26 08:52 pandaJob.out
[2025-11-26 08:56:49] -rw------- 1 boinc boinc    991877 Nov 26 08:52 agis_schedconf.cvmfs.json
[2025-11-26 08:56:49] -rw------- 1 boinc boinc   1516240 Nov 26 08:52 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:56:49] drwx------ 5 boinc boinc      4096 Nov 26 08:52 pilot3
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc       523 Nov 26 08:53 boinc_task_state.xml
[2025-11-26 08:56:49] -rw------- 1 boinc boinc       966 Nov 26 08:53 memory_monitor_summary.json
[2025-11-26 08:56:49] -rw------- 1 boinc boinc     55669 Nov 26 08:53 log.47556149._004330.job.log.tgz.1
[2025-11-26 08:56:49] -rw------- 1 boinc boinc        95 Nov 26 08:55 pilot_heartbeat.json
[2025-11-26 08:56:49] -rw------- 1 boinc boinc      8396 Nov 26 08:55 heartbeat.json
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc      8192 Nov 26 08:56 boinc_mmap_file
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc        23 Nov 26 08:56 wrapper_checkpoint.txt
[2025-11-26 08:56:49] -rw------- 1 boinc boinc      4752 Nov 26 08:56 pilotlog.txt
[2025-11-26 08:56:49] -rw------- 1 boinc boinc     91515 Nov 26 08:56 log.47556149._004330.job.log.1
[2025-11-26 08:56:49] -rw------- 1 boinc boinc       186 Nov 26 08:56 output.list
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc       620 Nov 26 08:56 runtime_log
[2025-11-26 08:56:49] -rw------- 1 boinc boinc    163840 Nov 26 08:56 result.tar.gz
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc      8744 Nov 26 08:56 runtime_log.err
[2025-11-26 08:56:49] -rw------- 1 boinc boinc       649 Nov 26 08:56 hSjKDmwBvh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkzLKDmYTZYLn.diag
[2025-11-26 08:56:49] -rw-r--r-- 1 boinc boinc      9504 Nov 26 08:56 stderr.txt
[2025-11-26 08:56:49] No HITS result produced
[2025-11-26 08:56:49]  *** Contents of shared directory: ***
[2025-11-26 08:56:49] total 401080
[2025-11-26 08:56:49] -rw-r--r-- 2 boinc boinc 409926041 Nov 26 08:52 ATLAS.root_0
[2025-11-26 08:56:49] -rw-r--r-- 2 boinc boinc    590107 Nov 26 08:52 input.tar.gz
[2025-11-26 08:56:49] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:52 start_atlas.sh
[2025-11-26 08:56:49] -rw------- 1 boinc boinc    163840 Nov 26 08:56 result.tar.gz
08:56:50 (3352950): run_atlas exited; CPU time 31.349434
08:56:50 (3352950): called boinc_finish(0)

</stderr_txt>
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