Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
13:13:29 (1978729): wrapper (7.7.26015): starting
13:13:29 (1978729): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 13:13:29] Arguments: --nthreads 12
[2025-11-26 13:13:29] Threads: 12
[2025-11-26 13:13:29] Checking for CVMFS
[2025-11-26 13:13:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:13:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:13:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:13:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:13:29] 2.13.2.0 3658817 2209 64640 153332 0 81 12400039 16777216 1038 130560 0 2955812 99.993 87909 1297 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-26 13:13:29] CVMFS is ok
[2025-11-26 13:13:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:13:29] Checking for apptainer binary...
[2025-11-26 13:13:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:13:29] Running /usr/bin/apptainer --version
[2025-11-26 13:13:29] apptainer version 1.3.0-bp160.1.36
[2025-11-26 13:13:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:13:29] boinc-runner
[2025-11-26 13:13:29] apptainer works
[2025-11-26 13:13:29] Set ATHENA_PROC_NUMBER=12
[2025-11-26 13:13:29] Set ATHENA_CORE_NUMBER=12
[2025-11-26 13:13:29] Starting ATLAS job with PandaID=6896766414
[2025-11-26 13:13:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:55:58]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:55:58] 2025-11-26 21:55:17,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,417 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 15:55:58] 2025-11-26 21:55:18,419 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4321.26665625
[2025-11-26 15:55:58] 2025-11-26 21:55:18,421 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6896766414/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,421 | INFO     | extracted standard info from prmon json
[2025-11-26 15:55:58] 2025-11-26 21:55:18,421 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:55:58] 2025-11-26 21:55:18,421 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:55:58] 2025-11-26 21:55:18,422 | INFO     | fitting pss+swap vs Time
[2025-11-26 15:55:58] 2025-11-26 21:55:18,422 | INFO     | sum of square deviations: 1246386160.0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,422 | INFO     | sum of deviations: 57242092621.0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,422 | INFO     | mean x: 1764189253.0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,422 | INFO     | mean y: 3516419.3836477986
[2025-11-26 15:55:58] 2025-11-26 21:55:18,422 | INFO     | intersect: -81019434462.2266
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | chi2: 3.137489301821986
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | sum of square deviations: 1132458442.5
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | sum of deviations: 90050539929.49998
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | mean x: 1764189100.5
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | mean y: 3559639.9935064935
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | intersect: -140280776699.1423
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | chi2: 1.615833285424741
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | current chi2=1.615833285424741 (change=48.49916190992578 %)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | sum of square deviations: 1025693650.0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | sum of deviations: 83698915203.99998
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | mean x: 1764188948.0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | mean y: 3550567.4966442953
[2025-11-26 15:55:58] 2025-11-26 21:55:18,423 | INFO     | intersect: -143958246566.06848
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | chi2: 1.6171584856922554
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | current chi2=1.6171584856922554 (change=-0.08201342796116654 %)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | right removable region: 148
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | sum of square deviations: 1132458442.5
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | sum of deviations: 18857325310.5
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | mean x: 1764189405.5
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | mean y: 3567146.0324675324
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | intersect: -29373134267.76012
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | chi2: 1.575434130945362
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | current chi2=1.575434130945362 (change=49.7867887539733 %)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | sum of square deviations: 1025693650.0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | sum of deviations: 12864759516.999996
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | mean x: 1764189558.0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | mean y: 3575682.2080536913
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | intersect: -22123766537.442535
[2025-11-26 15:55:58] 2025-11-26 21:55:18,424 | INFO     | chi2: 1.570206834659381
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | current chi2=1.570206834659381 (change=0.33180037066002 %)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | left removable region: 20
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | sum of square deviations: 650252192.0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | sum of deviations: 30478040793.0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | mean x: 1764189527.5
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | mean y: 3631996.015625
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | intersect: -82685886082.11551
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | chi2: 0.00566646124892357
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | current memory leak: 46.87 B/s (using 128 data points, chi2=0.01)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | could have reported an average CPU frequency of 4158 MHz (9 samples)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | ..............................
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | . Timing measurements:
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | . get job = 0 s
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | . initial setup = 3 s
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | . payload setup = 2 s
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | . stage-in = 0 s
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | . payload execution = 9675 s
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | . stage-out = 0 s
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | . log creation = 0 s
[2025-11-26 15:55:58] 2025-11-26 21:55:18,425 | INFO     | ..............................
[2025-11-26 15:55:58] 2025-11-26 21:55:18,441 | INFO     | time since job start (9702s) is within the limit (172800.0s)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | 
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | job summary report
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | --------------------------------------------------
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | PanDA job id: 6896766414
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | task id: 47556185
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | errors: (none)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | pilot state: finished 
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | transexitcode: 0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | exeerrorcode: 0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | exeerrordiag: 
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | exitcode: 0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | exitmsg: OK
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | cpuconsumptiontime: 112378 s
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | nevents: 1000
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | neventsw: 0
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | pid: 1989498
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | pgrp: 1989498
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | corecount: 12
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | event service: False
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | sizes: {0: 2284256, 2: 2284518, 11: 2284546, 9681: 2314113, 9683: 2323135, 9684: 2323191, 9689: 2323629}
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | --------------------------------------------------
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | 
[2025-11-26 15:55:58] 2025-11-26 21:55:18,453 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-11-26 15:55:58] 2025-11-26 21:55:18,466 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,466 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,466 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,466 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,466 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,466 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,466 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,466 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,466 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,466 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,466 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,467 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,467 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,467 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,467 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,467 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,467 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,467 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,467 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,467 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:55:58] 2025-11-26 21:55:18,467 | INFO     | job 6896766414 has completed (purged errors)
[2025-11-26 15:55:58] 2025-11-26 21:55:18,467 | INFO     | overall cleanup function is called
[2025-11-26 15:55:58] 2025-11-26 21:55:19,480 | INFO     | --- collectZombieJob: --- 10, [1989498]
[2025-11-26 15:55:58] 2025-11-26 21:55:19,480 | INFO     | zombie collector waiting for pid 1989498
[2025-11-26 15:55:58] 2025-11-26 21:55:19,480 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:55:58] 2025-11-26 21:55:19,480 | INFO     | collected zombie processes
[2025-11-26 15:55:58] 2025-11-26 21:55:19,480 | INFO     | will attempt to kill all subprocesses of pid=1989498
[2025-11-26 15:55:58] 2025-11-26 21:55:19,532 | INFO     | process IDs to be killed: [1989498] (in reverse order)
[2025-11-26 15:55:58] 2025-11-26 21:55:19,562 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:55:58] 2025-11-26 21:55:19,562 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:55:58] 2025-11-26 21:55:19,565 | INFO     | did not find any defunct processes belonging to 1989498
[2025-11-26 15:55:58] 2025-11-26 21:55:19,569 | INFO     | did not find any defunct processes belonging to 1989498
[2025-11-26 15:55:58] 2025-11-26 21:55:19,569 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:55:58] 2025-11-26 21:55:19,569 | INFO     | ready for new job
[2025-11-26 15:55:58] 2025-11-26 21:55:19,570 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:55:58] 2025-11-26 21:55:19,571 | INFO     | ***************************************
[2025-11-26 15:55:58] 2025-11-26 21:55:19,571 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:55:58] 2025-11-26 21:55:19,571 | INFO     | ***************************************
[2025-11-26 15:55:58] 2025-11-26 21:55:19,571 | INFO     | 
[2025-11-26 15:55:58] 2025-11-26 21:55:19,573 | INFO     | architecture information:
[2025-11-26 15:55:58] 2025-11-26 21:55:19,573 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:55:58] 2025-11-26 21:55:19,581 | INFO     | cat /etc/os-release:
[2025-11-26 15:55:58] NAME="CentOS Linux"
[2025-11-26 15:55:58] VERSION="7 (Core)"
[2025-11-26 15:55:58] ID="centos"
[2025-11-26 15:55:58] ID_LIKE="rhel fedora"
[2025-11-26 15:55:58] VERSION_ID="7"
[2025-11-26 15:55:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:55:58] ANSI_COLOR="0;31"
[2025-11-26 15:55:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:55:58] HOME_URL="https://www.centos.org/"
[2025-11-26 15:55:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:55:58] 
[2025-11-26 15:55:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:55:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:55:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:55:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:55:58] 
[2025-11-26 15:55:58] 2025-11-26 21:55:19,581 | INFO     | ***************************************
[2025-11-26 15:55:58] 2025-11-26 21:55:20,084 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-11-26 15:55:58] 2025-11-26 21:55:20,093 | INFO     | sufficient remaining disk space (3847828275200 B)
[2025-11-26 15:55:58] 2025-11-26 21:55:20,093 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:55:58] 2025-11-26 21:55:20,093 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:55:58] 2025-11-26 21:55:20,093 | INFO     | update_server=False
[2025-11-26 15:55:58] 2025-11-26 21:55:20,093 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:55:58] 2025-11-26 21:55:20,093 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:55:58] 2025-11-26 21:55:20,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:55:58] 2025-11-26 21:55:20,094 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 15:55:58] 2025-11-26 21:55:20,094 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:55:58] 2025-11-26 21:55:20,094 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:55:58] 2025-11-26 21:55:20,094 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:55:58] 2025-11-26 21:55:20,406 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 15:55:58] 2025-11-26 21:55:20,406 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 15:55:58] 2025-11-26 21:55:20,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:55:58] 2025-11-26 21:55:20,406 | INFO     | will abort loop
[2025-11-26 15:55:58] 2025-11-26 21:55:20,508 | INFO     | all job control threads have been joined
[2025-11-26 15:55:58] 2025-11-26 21:55:20,914 | INFO     | all data control threads have been joined
[2025-11-26 15:55:58] 2025-11-26 21:55:21,098 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:21,099 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:21,192 | INFO     | all payload control threads have been joined
[2025-11-26 15:55:58] 2025-11-26 21:55:21,412 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:21,469 | INFO     | [job] validate thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:21,514 | INFO     | [job] control thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:21,686 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:21,866 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:21,919 | INFO     | [data] control thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:21,950 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:21,974 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:22,099 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:22,197 | INFO     | [payload] control thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:22,266 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:22,418 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:22,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:23,124 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:55:58] 2025-11-26 21:55:27,130 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:55:58] 2025-11-26 21:55:51,741 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:55:58] 2025-11-26 21:55:53,415 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140171393713984)>', '<ExcThread(monitor, started 140170544277248)>']
[2025-11-26 15:55:58] 2025-11-26 21:55:54,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:55:58] 2025-11-26 21:55:54,264 | INFO     | [monitor] control thread has ended
[2025-11-26 15:55:58] 2025-11-26 21:55:58,440 | INFO     | all workflow threads have been joined
[2025-11-26 15:55:58] 2025-11-26 21:55:58,441 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:55:58] 2025-11-26 21:55:58,441 | INFO     | traces error code: 0
[2025-11-26 15:55:58] 2025-11-26 21:55:58,441 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:55:58] 2025-11-26 21:55:58,500 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:55:58] 2025-11-26 21:55:58,501 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:55:58] 2025-11-26 21:55:58,502 [wrapper] pilotpid: 1982623
[2025-11-26 15:55:58] 2025-11-26 21:55:58,503 [wrapper] Pilot exit status: 0
[2025-11-26 15:55:58] 2025-11-26 21:55:58,508 [wrapper] pandaids: 6896766414
[2025-11-26 15:55:58] 2025-11-26 21:55:58,524 [wrapper] cleanup supervisor_pilot 2128083 1982624
[2025-11-26 15:55:58] 2025-11-26 21:55:58,526 [wrapper] Test setup, not cleaning
[2025-11-26 15:55:58] 2025-11-26 21:55:58,527 [wrapper] apfmon messages muted
[2025-11-26 15:55:58] 2025-11-26 21:55:58,529 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:55:58] 2025-11-26 21:55:58,530 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:55:58]  *** Error codes and diagnostics ***
[2025-11-26 15:55:58]     "exeErrorCode": 0,
[2025-11-26 15:55:58]     "exeErrorDiag": "",
[2025-11-26 15:55:58]     "pilotErrorCode": 0,
[2025-11-26 15:55:58]     "pilotErrorDiag": "",
[2025-11-26 15:55:58]  *** Listing of results directory ***
[2025-11-26 15:55:58] total 1318072
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc    576529 Nov 25 03:44 pilot3.tar.gz
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc      5112 Nov 25 04:00 queuedata.json
[2025-11-26 15:55:58] -rwx------. 1 boinc boinc     36292 Nov 25 04:01 runpilot2-wrapper.sh
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc       100 Nov 26 13:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:55:58] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 13:13 run_atlas
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc       105 Nov 26 13:13 job.xml
[2025-11-26 15:55:58] -rw-r--r--. 2 boinc boinc 412552015 Nov 26 13:13 EVNT.47483658._004276.pool.root.1
[2025-11-26 15:55:58] -rw-r--r--. 2 boinc boinc     15847 Nov 26 13:13 start_atlas.sh
[2025-11-26 15:55:58] drwxrwx--x. 1 boinc boinc        76 Nov 26 13:13 shared
[2025-11-26 15:55:58] -rw-r--r--. 2 boinc boinc    590105 Nov 26 13:13 input.tar.gz
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc     10032 Nov 26 13:13 init_data.xml
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc         0 Nov 26 13:13 boinc_setup_complete
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc         0 Nov 26 13:13 boinc_lockfile
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc      2781 Nov 26 13:13 pandaJob.out
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc        63 Nov 26 13:13 setup.sh.local
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc    991522 Nov 26 13:13 agis_schedconf.cvmfs.json
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc   1516240 Nov 26 13:13 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:55:58] drwx------. 1 boinc boinc       414 Nov 26 13:13 pilot3
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc       531 Nov 26 15:51 boinc_task_state.xml
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc        95 Nov 26 15:54 pilot_heartbeat.json
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc 926565341 Nov 26 15:54 HITS.47556185._000391.pool.root.1
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc      1041 Nov 26 15:55 memory_monitor_summary.json
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc   1920600 Nov 26 15:55 log.47556185._000391.job.log.tgz.1
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc      8587 Nov 26 15:55 heartbeat.json
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc        28 Nov 26 15:55 wrapper_checkpoint.txt
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc      8192 Nov 26 15:55 boinc_mmap_file
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc      4740 Nov 26 15:55 pilotlog.txt
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc   1422172 Nov 26 15:55 log.47556185._000391.job.log.1
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc       353 Nov 26 15:55 output.list
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc       620 Nov 26 15:55 runtime_log
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc   3358720 Nov 26 15:55 result.tar.gz
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc       658 Nov 26 15:55 ZYRNDmJ24h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiPJKDmBkUNem.diag
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc      9396 Nov 26 15:55 runtime_log.err
[2025-11-26 15:55:58] -rw-r--r--. 1 boinc boinc     20862 Nov 26 15:55 stderr.txt
[2025-11-26 15:55:58] HITS file was successfully produced:
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc 926565341 Nov 26 15:54 shared/HITS.pool.root.1
[2025-11-26 15:55:58]  *** Contents of shared directory: ***
[2025-11-26 15:55:58] total 1311612
[2025-11-26 15:55:58] -rw-r--r--. 2 boinc boinc 412552015 Nov 26 13:13 ATLAS.root_0
[2025-11-26 15:55:58] -rw-r--r--. 2 boinc boinc     15847 Nov 26 13:13 start_atlas.sh
[2025-11-26 15:55:58] -rw-r--r--. 2 boinc boinc    590105 Nov 26 13:13 input.tar.gz
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc 926565341 Nov 26 15:54 HITS.pool.root.1
[2025-11-26 15:55:58] -rw-------. 1 boinc boinc   3358720 Nov 26 15:55 result.tar.gz
15:56:00 (1978729): run_atlas exited; CPU time 112309.284539
15:56:00 (1978729): called boinc_finish(0)

</stderr_txt>
]]>

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