Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
12:12:37 (1902706): wrapper (7.7.26015): starting
12:12:37 (1902706): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 12:12:37] Arguments: --nthreads 12
[2025-11-26 12:12:37] Threads: 12
[2025-11-26 12:12:37] Checking for CVMFS
[2025-11-26 12:12:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:12:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:12:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:12:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:12:37] 2.13.2.0 3658817 2149 64592 153330 1 81 12387680 16777216 1038 130560 0 2852130 99.993 85247 1277 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-26 12:12:37] CVMFS is ok
[2025-11-26 12:12:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:12:37] Checking for apptainer binary...
[2025-11-26 12:12:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:12:37] Running /usr/bin/apptainer --version
[2025-11-26 12:12:37] apptainer version 1.3.0-bp160.1.36
[2025-11-26 12:12:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:12:37] boinc-runner
[2025-11-26 12:12:37] apptainer works
[2025-11-26 12:12:37] Set ATHENA_PROC_NUMBER=12
[2025-11-26 12:12:37] Set ATHENA_CORE_NUMBER=12
[2025-11-26 12:12:37] Starting ATLAS job with PandaID=6896766023
[2025-11-26 12:12:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:03:31]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:03:31] 2025-11-26 21:00:03,466 | INFO     | monitor loop #763: job 0:6896766023 is in state 'finished'
[2025-11-26 15:03:31] 2025-11-26 21:00:03,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:03:31] 2025-11-26 21:00:04,957 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 15:03:31] 2025-11-26 21:00:04,963 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4200.813031250001
[2025-11-26 15:03:31] 2025-11-26 21:00:04,966 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6896766023/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:03:31] 2025-11-26 21:00:04,967 | INFO     | extracted standard info from prmon json
[2025-11-26 15:03:31] 2025-11-26 21:00:04,967 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:03:31] 2025-11-26 21:00:04,967 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:03:31] 2025-11-26 21:00:04,969 | INFO     | fitting pss+swap vs Time
[2025-11-26 15:03:31] 2025-11-26 21:00:04,969 | INFO     | sum of square deviations: 1392881930.0
[2025-11-26 15:03:31] 2025-11-26 21:00:04,969 | INFO     | sum of deviations: 59047781802.999985
[2025-11-26 15:03:31] 2025-11-26 21:00:04,969 | INFO     | mean x: 1764185787.0
[2025-11-26 15:03:31] 2025-11-26 21:00:04,969 | INFO     | mean y: 3484441.1818181816
[2025-11-26 15:03:31] 2025-11-26 21:00:04,970 | INFO     | intersect: -74784805339.22319
[2025-11-26 15:03:31] 2025-11-26 21:00:04,970 | INFO     | chi2: 4.348632710094359
[2025-11-26 15:03:31] 2025-11-26 21:00:04,970 | INFO     | sum of square deviations: 1270051720.0
[2025-11-26 15:03:31] 2025-11-26 21:00:04,970 | INFO     | sum of deviations: 107601718264.5
[2025-11-26 15:03:31] 2025-11-26 21:00:04,970 | INFO     | mean x: 1764185634.5
[2025-11-26 15:03:31] 2025-11-26 21:00:04,970 | INFO     | mean y: 3544101.59375
[2025-11-26 15:03:31] 2025-11-26 21:00:04,971 | INFO     | intersect: -149462341909.52646
[2025-11-26 15:03:31] 2025-11-26 21:00:04,971 | INFO     | chi2: 1.9885235182533687
[2025-11-26 15:03:31] 2025-11-26 21:00:04,971 | INFO     | current chi2=1.9885235182533687 (change=54.272442608513124 %)
[2025-11-26 15:03:31] 2025-11-26 21:00:04,971 | INFO     | sum of square deviations: 1154663510.0
[2025-11-26 15:03:31] 2025-11-26 21:00:04,971 | INFO     | sum of deviations: 100837542487.0
[2025-11-26 15:03:31] 2025-11-26 21:00:04,971 | INFO     | mean x: 1764185482.0
[2025-11-26 15:03:31] 2025-11-26 21:00:04,971 | INFO     | mean y: 3535160.335483871
[2025-11-26 15:03:31] 2025-11-26 21:00:04,971 | INFO     | intersect: -154063971914.62488
[2025-11-26 15:03:31] 2025-11-26 21:00:04,972 | INFO     | chi2: 1.9894410279426382
[2025-11-26 15:03:31] 2025-11-26 21:00:04,972 | INFO     | current chi2=1.9894410279426382 (change=-0.046140248322303644 %)
[2025-11-26 15:03:31] 2025-11-26 21:00:04,972 | INFO     | right removable region: 154
[2025-11-26 15:03:31] 2025-11-26 21:00:04,972 | INFO     | sum of square deviations: 1270051720.0
[2025-11-26 15:03:31] 2025-11-26 21:00:04,972 | INFO     | sum of deviations: 11759556118.500004
[2025-11-26 15:03:31] 2025-11-26 21:00:04,972 | INFO     | mean x: 1764185939.5
[2025-11-26 15:03:31] 2025-11-26 21:00:04,972 | INFO     | mean y: 3542572.31875
[2025-11-26 15:03:31] 2025-11-26 21:00:04,972 | INFO     | intersect: -16331259571.816689
[2025-11-26 15:03:31] 2025-11-26 21:00:04,973 | INFO     | chi2: 2.462858150829394
[2025-11-26 15:03:31] 2025-11-26 21:00:04,973 | INFO     | current chi2=2.462858150829394 (change=43.36476968697699 %)
[2025-11-26 15:03:31] 2025-11-26 21:00:04,973 | INFO     | sum of square deviations: 1154663510.0
[2025-11-26 15:03:31] 2025-11-26 21:00:04,973 | INFO     | sum of deviations: 3472267497.9999924
[2025-11-26 15:03:31] 2025-11-26 21:00:04,973 | INFO     | mean x: 1764186092.0
[2025-11-26 15:03:31] 2025-11-26 21:00:04,973 | INFO     | mean y: 3553500.9677419355
[2025-11-26 15:03:31] 2025-11-26 21:00:04,973 | INFO     | intersect: -5301650980.357925
[2025-11-26 15:03:31] 2025-11-26 21:00:04,973 | INFO     | chi2: 2.446374899251194
[2025-11-26 15:03:31] 2025-11-26 21:00:04,973 | INFO     | current chi2=2.446374899251194 (change=0.6692732820462747 %)
[2025-11-26 15:03:31] 2025-11-26 21:00:04,974 | INFO     | left removable region: 20
[2025-11-26 15:03:31] 2025-11-26 21:00:04,974 | INFO     | sum of square deviations: 746051197.5
[2025-11-26 15:03:31] 2025-11-26 21:00:04,974 | INFO     | sum of deviations: 33366126327.499996
[2025-11-26 15:03:31] 2025-11-26 21:00:04,974 | INFO     | mean x: 1764186061.5
[2025-11-26 15:03:31] 2025-11-26 21:00:04,974 | INFO     | mean y: 3631123.2910447763
[2025-11-26 15:03:31] 2025-11-26 21:00:04,974 | INFO     | intersect: -78897193901.15196
[2025-11-26 15:03:31] 2025-11-26 21:00:04,974 | INFO     | chi2: 0.006589311431450339
[2025-11-26 15:03:31] 2025-11-26 21:00:04,974 | INFO     | current memory leak: 44.72 B/s (using 134 data points, chi2=0.01)
[2025-11-26 15:03:31] 2025-11-26 21:00:04,975 | INFO     | could have reported an average CPU frequency of 4084 MHz (9 samples)
[2025-11-26 15:03:31] 2025-11-26 21:00:04,975 | INFO     | ..............................
[2025-11-26 15:03:31] 2025-11-26 21:00:04,975 | INFO     | . Timing measurements:
[2025-11-26 15:03:31] 2025-11-26 21:00:04,975 | INFO     | . get job = 0 s
[2025-11-26 15:03:31] 2025-11-26 21:00:04,975 | INFO     | . initial setup = 2 s
[2025-11-26 15:03:31] 2025-11-26 21:00:04,975 | INFO     | . payload setup = 3 s
[2025-11-26 15:03:31] 2025-11-26 21:00:04,975 | INFO     | . stage-in = 0 s
[2025-11-26 15:03:31] 2025-11-26 21:00:04,975 | INFO     | . payload execution = 10009 s
[2025-11-26 15:03:31] 2025-11-26 21:00:04,975 | INFO     | . stage-out = 1 s
[2025-11-26 15:03:31] 2025-11-26 21:00:04,975 | INFO     | . log creation = 0 s
[2025-11-26 15:03:31] 2025-11-26 21:00:04,975 | INFO     | ..............................
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | 
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | job summary report
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | --------------------------------------------------
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | PanDA job id: 6896766023
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | task id: 47556185
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | errors: (none)
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | pilot state: finished 
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | transexitcode: 0
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | exeerrorcode: 0
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | exeerrordiag: 
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | exitcode: 0
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | exitmsg: OK
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | cpuconsumptiontime: 116223 s
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | nevents: 1000
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | neventsw: 0
[2025-11-26 15:03:31] 2025-11-26 21:00:05,028 | INFO     | pid: 1913835
[2025-11-26 15:03:31] 2025-11-26 21:00:05,029 | INFO     | pgrp: 1913835
[2025-11-26 15:03:31] 2025-11-26 21:00:05,029 | INFO     | corecount: 12
[2025-11-26 15:03:31] 2025-11-26 21:00:05,029 | INFO     | event service: False
[2025-11-26 15:03:31] 2025-11-26 21:00:05,029 | INFO     | sizes: {0: 2284141, 1: 2284340, 3: 2284602, 11: 2284630, 10016: 2314340, 10018: 2323334, 10021: 2323518, 10026: 2323828}
[2025-11-26 15:03:31] 2025-11-26 21:00:05,029 | INFO     | --------------------------------------------------
[2025-11-26 15:03:31] 2025-11-26 21:00:05,029 | INFO     | 
[2025-11-26 15:03:31] 2025-11-26 21:00:05,029 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,045 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,046 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,046 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,046 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:03:31] 2025-11-26 21:00:05,046 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,046 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:03:31] 2025-11-26 21:00:05,046 | INFO     | job 6896766023 has completed (purged errors)
[2025-11-26 15:03:31] 2025-11-26 21:00:05,046 | INFO     | overall cleanup function is called
[2025-11-26 15:03:31] 2025-11-26 21:00:06,061 | INFO     | --- collectZombieJob: --- 10, [1913835]
[2025-11-26 15:03:31] 2025-11-26 21:00:06,061 | INFO     | zombie collector waiting for pid 1913835
[2025-11-26 15:03:31] 2025-11-26 21:00:06,061 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:03:31] 2025-11-26 21:00:06,061 | INFO     | collected zombie processes
[2025-11-26 15:03:31] 2025-11-26 21:00:06,061 | INFO     | will attempt to kill all subprocesses of pid=1913835
[2025-11-26 15:03:31] 2025-11-26 21:00:06,154 | INFO     | process IDs to be killed: [1913835] (in reverse order)
[2025-11-26 15:03:31] 2025-11-26 21:00:06,200 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:03:31] 2025-11-26 21:00:06,200 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:03:31] 2025-11-26 21:00:06,205 | INFO     | did not find any defunct processes belonging to 1913835
[2025-11-26 15:03:31] 2025-11-26 21:00:06,208 | INFO     | did not find any defunct processes belonging to 1913835
[2025-11-26 15:03:31] 2025-11-26 21:00:06,209 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:03:31] 2025-11-26 21:00:06,209 | INFO     | ready for new job
[2025-11-26 15:03:31] 2025-11-26 21:00:06,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:03:31] 2025-11-26 21:00:06,211 | INFO     | ***************************************
[2025-11-26 15:03:31] 2025-11-26 21:00:06,211 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:03:31] 2025-11-26 21:00:06,211 | INFO     | ***************************************
[2025-11-26 15:03:31] 2025-11-26 21:00:06,211 | INFO     | 
[2025-11-26 15:03:31] 2025-11-26 21:00:06,212 | INFO     | architecture information:
[2025-11-26 15:03:31] 2025-11-26 21:00:06,213 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:03:31] 2025-11-26 21:00:06,221 | INFO     | cat /etc/os-release:
[2025-11-26 15:03:31] NAME="CentOS Linux"
[2025-11-26 15:03:31] VERSION="7 (Core)"
[2025-11-26 15:03:31] ID="centos"
[2025-11-26 15:03:31] ID_LIKE="rhel fedora"
[2025-11-26 15:03:31] VERSION_ID="7"
[2025-11-26 15:03:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:03:31] ANSI_COLOR="0;31"
[2025-11-26 15:03:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:03:31] HOME_URL="https://www.centos.org/"
[2025-11-26 15:03:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:03:31] 
[2025-11-26 15:03:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:03:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:03:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:03:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:03:31] 
[2025-11-26 15:03:31] 2025-11-26 21:00:06,221 | INFO     | ***************************************
[2025-11-26 15:03:31] 2025-11-26 21:00:06,724 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-26 15:03:31] 2025-11-26 21:00:06,734 | INFO     | sufficient remaining disk space (3848444837888 B)
[2025-11-26 15:03:31] 2025-11-26 21:00:06,734 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:03:31] 2025-11-26 21:00:06,734 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:03:31] 2025-11-26 21:00:06,734 | INFO     | update_server=False
[2025-11-26 15:03:31] 2025-11-26 21:00:06,734 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:03:31] 2025-11-26 21:00:06,735 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:03:31] 2025-11-26 21:00:06,735 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:03:31] 2025-11-26 21:00:06,775 | INFO     | all data control threads have been joined
[2025-11-26 15:03:31] 2025-11-26 21:00:06,974 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:03:31] 2025-11-26 21:00:06,974 | INFO     | aborting loop
[2025-11-26 15:03:31] 2025-11-26 21:00:07,076 | INFO     | all job control threads have been joined
[2025-11-26 15:03:31] 2025-11-26 21:00:07,312 | INFO     | all payload control threads have been joined
[2025-11-26 15:03:31] 2025-11-26 21:00:07,742 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:07,742 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:07,780 | INFO     | [data] control thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:07,979 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:08,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:03:31] 2025-11-26 21:00:08,039 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:08,081 | INFO     | [job] control thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:08,109 | INFO     | [job] validate thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:08,317 | INFO     | [payload] control thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:08,320 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:08,442 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:08,631 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:08,672 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:08,761 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:09,160 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:10,022 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:10,740 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:03:31] 2025-11-26 21:00:35,177 | INFO     | 10041s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 15:03:31] 2025-11-26 21:00:36,280 | INFO     | PID=1906937 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:03:31] 2025-11-26 21:00:36,280 | INFO     | .. there are 2 such processes running
[2025-11-26 15:03:31] 2025-11-26 21:00:36,280 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:03:31] 2025-11-26 21:00:36,280 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:03:31] 2025-11-26 21:00:36,281 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:03:31] 2025-11-26 21:01:02,440 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:03:31] 2025-11-26 21:01:04,153 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140583318861632)>', '<ExcThread(monitor, started 140582961784576)>']
[2025-11-26 15:03:31] 2025-11-26 21:01:04,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:03:31] 2025-11-26 21:01:04,420 | INFO     | [monitor] control thread has ended
[2025-11-26 15:03:31] 2025-11-26 21:01:09,178 | INFO     | all workflow threads have been joined
[2025-11-26 15:03:31] 2025-11-26 21:01:09,178 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:03:31] 2025-11-26 21:01:09,178 | INFO     | traces error code: 0
[2025-11-26 15:03:31] 2025-11-26 21:01:09,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:03:31] 2025-11-26 21:01:09,252 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:03:31] 2025-11-26 21:01:09,254 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:03:31] 2025-11-26 21:01:09,256 [wrapper] pilotpid: 1906937
[2025-11-26 15:03:31] 2025-11-26 21:01:09,258 [wrapper] Pilot exit status: 0
[2025-11-26 15:03:31] 2025-11-26 21:01:09,264 [wrapper] pandaids: 6896766023
[2025-11-26 15:03:31] 2025-11-26 21:01:09,289 [wrapper] cleanup supervisor_pilot 2088701 1906938
[2025-11-26 15:03:31] 2025-11-26 21:01:09,292 [wrapper] Test setup, not cleaning
[2025-11-26 15:03:31] 2025-11-26 21:01:09,294 [wrapper] apfmon messages muted
[2025-11-26 15:03:31] 2025-11-26 21:01:09,296 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:03:31] 2025-11-26 21:01:09,301 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:03:31]  *** Error codes and diagnostics ***
[2025-11-26 15:03:31]     "exeErrorCode": 0,
[2025-11-26 15:03:31]     "exeErrorDiag": "",
[2025-11-26 15:03:31]     "pilotErrorCode": 0,
[2025-11-26 15:03:31]     "pilotErrorDiag": "",
[2025-11-26 15:03:31]  *** Listing of results directory ***
[2025-11-26 15:03:31] total 1301768
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc    576529 Nov 25 03:44 pilot3.tar.gz
[2025-11-26 15:03:31] -rwx------. 1 boinc boinc     36292 Nov 25 04:00 runpilot2-wrapper.sh
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc      5112 Nov 25 04:00 queuedata.json
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc       100 Nov 26 12:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:03:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 12:12 run_atlas
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc       105 Nov 26 12:12 job.xml
[2025-11-26 15:03:31] -rw-r--r--. 2 boinc boinc     15847 Nov 26 12:12 start_atlas.sh
[2025-11-26 15:03:31] drwxrwx--x. 1 boinc boinc        76 Nov 26 12:12 shared
[2025-11-26 15:03:31] -rw-r--r--. 2 boinc boinc    590103 Nov 26 12:12 input.tar.gz
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc     10032 Nov 26 12:12 init_data.xml
[2025-11-26 15:03:31] -rw-r--r--. 2 boinc boinc 408956967 Nov 26 12:12 EVNT.47483658._004275.pool.root.1
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc         0 Nov 26 12:12 boinc_setup_complete
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc         0 Nov 26 12:12 boinc_lockfile
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc      2784 Nov 26 12:12 pandaJob.out
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc        63 Nov 26 12:12 setup.sh.local
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc    991530 Nov 26 12:12 agis_schedconf.cvmfs.json
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc   1516240 Nov 26 12:12 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:03:31] drwx------. 1 boinc boinc       414 Nov 26 12:12 pilot3
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc       531 Nov 26 14:55 boinc_task_state.xml
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc 913301818 Nov 26 14:59 HITS.47556185._000383.pool.root.1
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc      1041 Nov 26 14:59 memory_monitor_summary.json
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc   1938357 Nov 26 14:59 log.47556185._000383.job.log.tgz.1
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc        95 Nov 26 15:00 pilot_heartbeat.json
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc      8599 Nov 26 15:00 heartbeat.json
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc      4941 Nov 26 15:01 pilotlog.txt
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc   1479309 Nov 26 15:01 log.47556185._000383.job.log.1
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc       353 Nov 26 15:01 output.list
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc       620 Nov 26 15:01 runtime_log
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc   3440640 Nov 26 15:01 result.tar.gz
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc      9397 Nov 26 15:01 runtime_log.err
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc       660 Nov 26 15:01 B8FLDmz14h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJJMKDm2I7KBo.diag
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc      8192 Nov 26 15:03 boinc_mmap_file
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc        28 Nov 26 15:03 wrapper_checkpoint.txt
[2025-11-26 15:03:31] -rw-r--r--. 1 boinc boinc     20976 Nov 26 15:03 stderr.txt
[2025-11-26 15:03:31] HITS file was successfully produced:
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc 913301818 Nov 26 14:59 shared/HITS.pool.root.1
[2025-11-26 15:03:31]  *** Contents of shared directory: ***
[2025-11-26 15:03:31] total 1295232
[2025-11-26 15:03:31] -rw-r--r--. 2 boinc boinc     15847 Nov 26 12:12 start_atlas.sh
[2025-11-26 15:03:31] -rw-r--r--. 2 boinc boinc    590103 Nov 26 12:12 input.tar.gz
[2025-11-26 15:03:31] -rw-r--r--. 2 boinc boinc 408956967 Nov 26 12:12 ATLAS.root_0
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc 913301818 Nov 26 14:59 HITS.pool.root.1
[2025-11-26 15:03:31] -rw-------. 1 boinc boinc   3440640 Nov 26 15:01 result.tar.gz
15:03:33 (1902706): run_atlas exited; CPU time 116155.093031
15:03:33 (1902706): called boinc_finish(0)

</stderr_txt>
]]>

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