Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:30:12 (1873395): wrapper (7.7.26015): starting
18:30:12 (1873395): wrapper: running run_atlas (--nthreads 6)
[2025-11-26 18:30:12] Arguments: --nthreads 6
[2025-11-26 18:30:12] Threads: 6
[2025-11-26 18:30:12] Checking for CVMFS
[2025-11-26 18:30:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:30:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:30:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:30:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:30:13] 2.13.3.0 1560231 1435 70740 153316 0 81 18840877 20971520 916 130560 0 1085367 99.987 58355 17 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-26 18:30:13] CVMFS is ok
[2025-11-26 18:30:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:30:13] Checking for apptainer binary...
[2025-11-26 18:30:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:30:13] Running /usr/bin/apptainer --version
[2025-11-26 18:30:13] apptainer version 1.4.4-1.el9
[2025-11-26 18:30:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:30:13] testio005
[2025-11-26 18:30:13] apptainer works
[2025-11-26 18:30:13] Set ATHENA_PROC_NUMBER=6
[2025-11-26 18:30:13] Set ATHENA_CORE_NUMBER=6
[2025-11-26 18:30:13] Starting ATLAS job with PandaID=6896766002
[2025-11-26 18:30:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:54:43]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:54:43] 2025-11-26 20:54:00,017 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:54:43] 2025-11-26 20:54:00,017 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:54:43] 2025-11-26 20:54:00,027 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:54:43] 2025-11-26 20:54:00,028 | INFO     | sum of square deviations: 93679578930.98752
[2025-11-27 05:54:43] 2025-11-26 20:54:00,038 | INFO     | sum of deviations: 786521728378.0923
[2025-11-27 05:54:43] 2025-11-26 20:54:00,038 | INFO     | mean x: 1764169891.0044708
[2025-11-27 05:54:43] 2025-11-26 20:54:00,038 | INFO     | mean y: 2664490.302533532
[2025-11-27 05:54:43] 2025-11-26 20:54:00,038 | INFO     | intersect: -14809079623.616064
[2025-11-27 05:54:43] 2025-11-26 20:54:00,039 | INFO     | chi2: 9.517592810849116
[2025-11-27 05:54:43] 2025-11-26 20:54:00,040 | INFO     | sum of square deviations: 91600964128.48662
[2025-11-27 05:54:43] 2025-11-26 20:54:00,050 | INFO     | sum of deviations: 989690634918.639
[2025-11-27 05:54:43] 2025-11-26 20:54:00,050 | INFO     | mean x: 1764169738.5045044
[2025-11-27 05:54:43] 2025-11-26 20:54:00,050 | INFO     | mean y: 2679391.7867867867
[2025-11-27 05:54:43] 2025-11-26 20:54:00,050 | INFO     | intersect: -19058061782.899128
[2025-11-27 05:54:43] 2025-11-26 20:54:00,051 | INFO     | chi2: 6.477183506778277
[2025-11-27 05:54:43] 2025-11-26 20:54:00,051 | INFO     | current chi2=6.477183506778277 (change=31.945150044715852 %)
[2025-11-27 05:54:43] 2025-11-26 20:54:00,052 | INFO     | sum of square deviations: 89553326650.98604
[2025-11-27 05:54:43] 2025-11-26 20:54:00,061 | INFO     | sum of deviations: 1122823940080.6301
[2025-11-27 05:54:43] 2025-11-26 20:54:00,062 | INFO     | mean x: 1764169586.0045385
[2025-11-27 05:54:43] 2025-11-26 20:54:00,062 | INFO     | mean y: 2689286.4568835096
[2025-11-27 05:54:43] 2025-11-26 20:54:00,062 | INFO     | intersect: -22116554292.823593
[2025-11-27 05:54:43] 2025-11-26 20:54:00,063 | INFO     | chi2: 4.786743751781018
[2025-11-27 05:54:43] 2025-11-26 20:54:00,063 | INFO     | current chi2=4.786743751781018 (change=26.09837675940845 %)
[2025-11-27 05:54:43] 2025-11-26 20:54:00,063 | INFO     | sum of square deviations: 87536433935.98631
[2025-11-27 05:54:43] 2025-11-26 20:54:00,073 | INFO     | sum of deviations: 1111756093324.8586
[2025-11-27 05:54:43] 2025-11-26 20:54:00,073 | INFO     | mean x: 1764169433.504573
[2025-11-27 05:54:43] 2025-11-26 20:54:00,073 | INFO     | mean y: 2688447.713414634
[2025-11-27 05:54:43] 2025-11-26 20:54:00,073 | INFO     | intersect: -22403137665.679016
[2025-11-27 05:54:43] 2025-11-26 20:54:00,074 | INFO     | chi2: 4.775307774311462
[2025-11-27 05:54:43] 2025-11-26 20:54:00,074 | INFO     | current chi2=4.775307774311462 (change=0.23890933090582656 %)
[2025-11-27 05:54:43] 2025-11-26 20:54:00,074 | INFO     | right removable region: 655
[2025-11-27 05:54:43] 2025-11-26 20:54:00,075 | INFO     | sum of square deviations: 91600962298.48662
[2025-11-27 05:54:43] 2025-11-26 20:54:00,085 | INFO     | sum of deviations: 583763590924.883
[2025-11-27 05:54:43] 2025-11-26 20:54:00,085 | INFO     | mean x: 1764170043.5045044
[2025-11-27 05:54:43] 2025-11-26 20:54:00,085 | INFO     | mean y: 2679357.539039039
[2025-11-27 05:54:43] 2025-11-26 20:54:00,085 | INFO     | intersect: -11240196413.159184
[2025-11-27 05:54:43] 2025-11-26 20:54:00,086 | INFO     | chi2: 6.752054038116279
[2025-11-27 05:54:43] 2025-11-26 20:54:00,086 | INFO     | current chi2=6.752054038116279 (change=29.057124292819044 %)
[2025-11-27 05:54:43] 2025-11-26 20:54:00,087 | INFO     | sum of square deviations: 89553322990.98604
[2025-11-27 05:54:43] 2025-11-26 20:54:00,096 | INFO     | sum of deviations: 423348542460.117
[2025-11-27 05:54:43] 2025-11-26 20:54:00,097 | INFO     | mean x: 1764170196.0045385
[2025-11-27 05:54:43] 2025-11-26 20:54:00,097 | INFO     | mean y: 2691300.627836611
[2025-11-27 05:54:43] 2025-11-26 20:54:00,097 | INFO     | intersect: -8337131903.981502
[2025-11-27 05:54:43] 2025-11-26 20:54:00,098 | INFO     | chi2: 5.1492943925223775
[2025-11-27 05:54:43] 2025-11-26 20:54:00,098 | INFO     | current chi2=5.1492943925223775 (change=23.73736401613645 %)
[2025-11-27 05:54:43] 2025-11-26 20:54:00,098 | INFO     | left removable region: 20
[2025-11-27 05:54:43] 2025-11-26 20:54:00,099 | INFO     | sum of square deviations: 79395961548.98524
[2025-11-27 05:54:43] 2025-11-26 20:54:00,107 | INFO     | sum of deviations: 677571151161.6201
[2025-11-27 05:54:43] 2025-11-26 20:54:00,108 | INFO     | mean x: 1764170013.0047245
[2025-11-27 05:54:43] 2025-11-26 20:54:00,108 | INFO     | mean y: 2721796.45984252
[2025-11-27 05:54:43] 2025-11-26 20:54:00,108 | INFO     | intersect: -15052838753.920559
[2025-11-27 05:54:43] 2025-11-26 20:54:00,108 | INFO     | chi2: 0.1713487171373636
[2025-11-27 05:54:43] 2025-11-26 20:54:00,109 | INFO     | current memory leak: 8.53 B/s (using 635 data points, chi2=0.17)
[2025-11-27 05:54:43] 2025-11-26 20:54:00,109 | INFO     | could have reported an average CPU frequency of 3289 MHz (25 samples)
[2025-11-27 05:54:43] 2025-11-26 20:54:00,110 | INFO     | ..............................
[2025-11-27 05:54:43] 2025-11-26 20:54:00,110 | INFO     | . Timing measurements:
[2025-11-27 05:54:43] 2025-11-26 20:54:00,110 | INFO     | . get job = 0 s
[2025-11-27 05:54:43] 2025-11-26 20:54:00,110 | INFO     | . initial setup = 8 s
[2025-11-27 05:54:43] 2025-11-26 20:54:00,110 | INFO     | . payload setup = 5 s
[2025-11-27 05:54:43] 2025-11-26 20:54:00,110 | INFO     | . stage-in = 0 s
[2025-11-27 05:54:43] 2025-11-26 20:54:00,110 | INFO     | . payload execution = 40901 s
[2025-11-27 05:54:43] 2025-11-26 20:54:00,110 | INFO     | . stage-out = 4 s
[2025-11-27 05:54:43] 2025-11-26 20:54:00,110 | INFO     | . log creation = 0 s
[2025-11-27 05:54:43] 2025-11-26 20:54:00,110 | INFO     | ..............................
[2025-11-27 05:54:43] 2025-11-26 20:54:00,357 | INFO     | 
[2025-11-27 05:54:43] 2025-11-26 20:54:00,357 | INFO     | job summary report
[2025-11-27 05:54:43] 2025-11-26 20:54:00,357 | INFO     | --------------------------------------------------
[2025-11-27 05:54:43] 2025-11-26 20:54:00,357 | INFO     | PanDA job id: 6896766002
[2025-11-27 05:54:43] 2025-11-26 20:54:00,357 | INFO     | task id: 47556185
[2025-11-27 05:54:43] 2025-11-26 20:54:00,357 | INFO     | errors: (none)
[2025-11-27 05:54:43] 2025-11-26 20:54:00,357 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:54:43] 2025-11-26 20:54:00,357 | INFO     | pilot state: finished 
[2025-11-27 05:54:43] 2025-11-26 20:54:00,357 | INFO     | transexitcode: 0
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | exeerrorcode: 0
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | exeerrordiag: 
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | exitcode: 0
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | exitmsg: OK
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | cpuconsumptiontime: 229749 s
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | nevents: 1000
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | neventsw: 0
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | pid: 1883866
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | pgrp: 1883866
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | corecount: 6
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | event service: False
[2025-11-27 05:54:43] 2025-11-26 20:54:00,358 | INFO     | sizes: {0: 2283484, 1: 2284340, 6: 2284602, 12: 2284630, 40910: 2328086, 40915: 2337264, 40995: 2337518}
[2025-11-27 05:54:43] 2025-11-26 20:54:00,359 | INFO     | --------------------------------------------------
[2025-11-27 05:54:43] 2025-11-26 20:54:00,359 | INFO     | 
[2025-11-27 05:54:43] 2025-11-26 20:54:00,359 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-27 05:54:43] 2025-11-26 20:54:00,378 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,378 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,379 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,379 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,379 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,379 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,379 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,379 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,379 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,379 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,379 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,379 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,380 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,380 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,380 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,380 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,380 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,380 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:54:43] 2025-11-26 20:54:00,380 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,380 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:54:43] 2025-11-26 20:54:00,380 | INFO     | job 6896766002 has completed (purged errors)
[2025-11-27 05:54:43] 2025-11-26 20:54:00,380 | INFO     | overall cleanup function is called
[2025-11-27 05:54:43] 2025-11-26 20:54:01,396 | INFO     | --- collectZombieJob: --- 10, [1883866]
[2025-11-27 05:54:43] 2025-11-26 20:54:01,397 | INFO     | zombie collector waiting for pid 1883866
[2025-11-27 05:54:43] 2025-11-26 20:54:01,397 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:54:43] 2025-11-26 20:54:01,397 | INFO     | collected zombie processes
[2025-11-27 05:54:43] 2025-11-26 20:54:01,397 | INFO     | will attempt to kill all subprocesses of pid=1883866
[2025-11-27 05:54:43] 2025-11-26 20:54:01,507 | INFO     | process IDs to be killed: [1883866] (in reverse order)
[2025-11-27 05:54:43] 2025-11-26 20:54:01,556 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:54:43] 2025-11-26 20:54:01,556 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:54:43] 2025-11-26 20:54:01,560 | INFO     | did not find any defunct processes belonging to 1883866
[2025-11-27 05:54:43] 2025-11-26 20:54:01,563 | INFO     | did not find any defunct processes belonging to 1883866
[2025-11-27 05:54:43] 2025-11-26 20:54:01,565 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:54:43] 2025-11-26 20:54:01,565 | INFO     | ready for new job
[2025-11-27 05:54:43] 2025-11-26 20:54:01,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:54:43] 2025-11-26 20:54:01,568 | INFO     | ***************************************
[2025-11-27 05:54:43] 2025-11-26 20:54:01,568 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:54:43] 2025-11-26 20:54:01,568 | INFO     | ***************************************
[2025-11-27 05:54:43] 2025-11-26 20:54:01,568 | INFO     | 
[2025-11-27 05:54:43] 2025-11-26 20:54:01,569 | INFO     | architecture information:
[2025-11-27 05:54:43] 2025-11-26 20:54:01,570 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:54:43] 2025-11-26 20:54:01,584 | INFO     | cat /etc/os-release:
[2025-11-27 05:54:43] NAME="CentOS Linux"
[2025-11-27 05:54:43] VERSION="7 (Core)"
[2025-11-27 05:54:43] ID="centos"
[2025-11-27 05:54:43] ID_LIKE="rhel fedora"
[2025-11-27 05:54:43] VERSION_ID="7"
[2025-11-27 05:54:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:54:43] ANSI_COLOR="0;31"
[2025-11-27 05:54:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:54:43] HOME_URL="https://www.centos.org/"
[2025-11-27 05:54:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:54:43] 
[2025-11-27 05:54:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:54:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:54:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:54:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:54:43] 
[2025-11-27 05:54:43] 2025-11-26 20:54:01,584 | INFO     | ***************************************
[2025-11-27 05:54:43] 2025-11-26 20:54:02,087 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-27 05:54:43] 2025-11-26 20:54:02,102 | INFO     | sufficient remaining disk space (88514494464 B)
[2025-11-27 05:54:43] 2025-11-26 20:54:02,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:54:43] 2025-11-26 20:54:02,102 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:54:43] 2025-11-26 20:54:02,103 | INFO     | update_server=False
[2025-11-27 05:54:43] 2025-11-26 20:54:02,103 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:54:43] 2025-11-26 20:54:02,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:54:43] 2025-11-26 20:54:02,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:54:43] 2025-11-26 20:54:02,103 | INFO     | aborting loop
[2025-11-27 05:54:43] 2025-11-26 20:54:02,356 | INFO     | all data control threads have been joined
[2025-11-27 05:54:43] 2025-11-26 20:54:03,079 | INFO     | all payload control threads have been joined
[2025-11-27 05:54:43] 2025-11-26 20:54:03,107 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:03,108 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:03,109 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:03,124 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:54:43] 2025-11-26 20:54:03,155 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:03,207 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:03,277 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:54:43] 2025-11-26 20:54:03,362 | INFO     | [data] control thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:03,529 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:03,673 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:03,680 | INFO     | all job control threads have been joined
[2025-11-27 05:54:43] 2025-11-26 20:54:03,729 | INFO     | [job] validate thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:04,084 | INFO     | [payload] control thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:04,309 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:04,560 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:04,598 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:04,682 | INFO     | [job] control thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:05,282 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:07,127 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:54:43] 2025-11-26 20:54:32,989 | INFO     | PID=1877165 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:54:43] 2025-11-26 20:54:32,989 | INFO     | .. there are 2 such processes running
[2025-11-27 05:54:43] 2025-11-26 20:54:32,989 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:54:43] 2025-11-26 20:54:32,989 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:54:43] 2025-11-26 20:54:32,989 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:54:43] 2025-11-26 20:54:37,610 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:54:43] 2025-11-26 20:54:38,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140101509662528)>', '<ExcThread(monitor, started 140100860098304)>']
[2025-11-27 05:54:43] 2025-11-26 20:54:39,019 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:54:43] 2025-11-26 20:54:39,019 | INFO     | [monitor] control thread has ended
[2025-11-27 05:54:43] 2025-11-26 20:54:43,381 | INFO     | all workflow threads have been joined
[2025-11-27 05:54:43] 2025-11-26 20:54:43,381 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:54:43] 2025-11-26 20:54:43,381 | INFO     | traces error code: 0
[2025-11-27 05:54:43] 2025-11-26 20:54:43,382 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:54:43] 2025-11-26 20:54:43,488 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:54:43] 2025-11-26 20:54:43,491 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:54:43] 2025-11-26 20:54:43,493 [wrapper] pilotpid: 1877165
[2025-11-27 05:54:43] 2025-11-26 20:54:43,496 [wrapper] Pilot exit status: 0
[2025-11-27 05:54:43] 2025-11-26 20:54:43,506 [wrapper] pandaids: 6896766002
[2025-11-27 05:54:43] 2025-11-26 20:54:43,534 [wrapper] cleanup supervisor_pilot 2023651 1877166
[2025-11-27 05:54:43] 2025-11-26 20:54:43,536 [wrapper] Test setup, not cleaning
[2025-11-27 05:54:43] 2025-11-26 20:54:43,539 [wrapper] apfmon messages muted
[2025-11-27 05:54:43] 2025-11-26 20:54:43,541 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:54:43] 2025-11-26 20:54:43,544 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:54:43]  *** Error codes and diagnostics ***
[2025-11-27 05:54:43]     "exeErrorCode": 0,
[2025-11-27 05:54:43]     "exeErrorDiag": "",
[2025-11-27 05:54:43]     "pilotErrorCode": 0,
[2025-11-27 05:54:43]     "pilotErrorDiag": "",
[2025-11-27 05:54:43]  *** Listing of results directory ***
[2025-11-27 05:54:43] total 1317388
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc    576529 Nov 25 18:44 pilot3.tar.gz
[2025-11-27 05:54:43] -rwx------. 1 boinc boinc     36292 Nov 25 18:47 runpilot2-wrapper.sh
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc      5112 Nov 25 18:47 queuedata.json
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc       100 Nov 26 18:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:54:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 18:30 run_atlas
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc       105 Nov 26 18:30 job.xml
[2025-11-27 05:54:43] -rw-r--r--. 2 boinc boinc     15847 Nov 26 18:30 start_atlas.sh
[2025-11-27 05:54:43] drwxrwx--x. 2 boinc boinc        68 Nov 26 18:30 shared
[2025-11-27 05:54:43] -rw-r--r--. 2 boinc boinc    590098 Nov 26 18:30 input.tar.gz
[2025-11-27 05:54:43] -rw-r--r--. 2 boinc boinc 409857671 Nov 26 18:30 EVNT.47483658._004273.pool.root.1
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc         0 Nov 26 18:30 boinc_lockfile
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc      2784 Nov 26 18:30 pandaJob.out
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc    991827 Nov 26 18:30 agis_schedconf.cvmfs.json
[2025-11-27 05:54:43] drwx------. 5 boinc boinc      4096 Nov 26 18:30 pilot3
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc      9369 Nov 26 19:05 init_data.xml
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc       533 Nov 27 05:41 boinc_task_state.xml
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc 920425753 Nov 27 05:52 HITS.47556185._000362.pool.root.1
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc      1034 Nov 27 05:52 memory_monitor_summary.json
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc   1516240 Nov 27 05:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc   1700456 Nov 27 05:52 log.47556185._000362.job.log.tgz.1
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc        95 Nov 27 05:53 pilot_heartbeat.json
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc      8586 Nov 27 05:54 heartbeat.json
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc      8192 Nov 27 05:54 boinc_mmap_file
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc        29 Nov 27 05:54 wrapper_checkpoint.txt
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc      4823 Nov 27 05:54 pilotlog.txt
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc   5702440 Nov 27 05:54 log.47556185._000362.job.log.1
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc       353 Nov 27 05:54 output.list
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc       620 Nov 27 05:54 runtime_log
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc   7424000 Nov 27 05:54 result.tar.gz
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc       652 Nov 27 05:54 XllMDmEp4h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyIMKDm6HRDOm.diag
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc      8776 Nov 27 05:54 runtime_log.err
[2025-11-27 05:54:43] -rw-r--r--. 1 boinc boinc     20785 Nov 27 05:54 stderr.txt
[2025-11-27 05:54:43] HITS file was successfully produced:
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc 920425753 Nov 27 05:52 shared/HITS.pool.root.1
[2025-11-27 05:54:43]  *** Contents of shared directory: ***
[2025-11-27 05:54:43] total 1306956
[2025-11-27 05:54:43] -rw-r--r--. 2 boinc boinc     15847 Nov 26 18:30 start_atlas.sh
[2025-11-27 05:54:43] -rw-r--r--. 2 boinc boinc    590098 Nov 26 18:30 input.tar.gz
[2025-11-27 05:54:43] -rw-r--r--. 2 boinc boinc 409857671 Nov 26 18:30 ATLAS.root_0
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc 920425753 Nov 27 05:52 HITS.pool.root.1
[2025-11-27 05:54:43] -rw-------. 1 boinc boinc   7424000 Nov 27 05:54 result.tar.gz
05:54:44 (1873395): run_atlas exited; CPU time 229782.586652
05:54:44 (1873395): called boinc_finish(0)

</stderr_txt>
]]>

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