Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:52:58 (3122428): wrapper (7.7.26015): starting
07:52:58 (3122428): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 07:52:58] Arguments: --nthreads 3
[2025-11-26 07:52:58] Threads: 3
[2025-11-26 07:52:58] Checking for CVMFS
[2025-11-26 07:52:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:52:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:52:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:52:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:52:58] 2.9.2.0 2184780 442 72516 153312 1 88 35569186 36864001 0 130560 0 2791777 99.999 14447 30223 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 07:52:58] CVMFS is ok
[2025-11-26 07:52:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:52:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:52:58] Further information can be found at the LHC@home message board.
[2025-11-26 07:52:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:52:58] Checking for apptainer binary...
[2025-11-26 07:52:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:52:58] Running /usr/bin/apptainer --version
[2025-11-26 07:52:58] apptainer version 1.4.1-1.1
[2025-11-26 07:52:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:52:58] thA335
[2025-11-26 07:52:58] apptainer works
[2025-11-26 07:52:58] Set ATHENA_PROC_NUMBER=3
[2025-11-26 07:52:58] Set ATHENA_CORE_NUMBER=3
[2025-11-26 07:52:58] Starting ATLAS job with PandaID=6895417697
[2025-11-26 07:52:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 07:57:17]  *** The last 200 lines of the pilot log: ***
[2025-11-26 07:57:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 07:57:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 07:57:17] 
[2025-11-26 07:57:17] 2025-11-26 06:56:23,520 | INFO     | ***************************************
[2025-11-26 07:57:17] 2025-11-26 06:56:24,023 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 07:57:17] 2025-11-26 06:56:24,037 | INFO     | sufficient remaining disk space (826450903040 B)
[2025-11-26 07:57:17] 2025-11-26 06:56:24,037 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 07:57:17] 2025-11-26 06:56:24,038 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 07:57:17] 2025-11-26 06:56:24,038 | INFO     | update_server=False
[2025-11-26 07:57:17] 2025-11-26 06:56:24,038 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 07:57:17] 2025-11-26 06:56:24,038 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 07:57:17] 2025-11-26 06:56:24,038 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 07:57:17] 2025-11-26 06:56:24,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:57:17] 2025-11-26 06:56:24,115 | INFO     | all data control threads have been joined
[2025-11-26 07:57:17] 2025-11-26 06:56:24,715 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:57:17] 2025-11-26 06:56:24,715 | INFO     | aborting loop
[2025-11-26 07:57:17] 2025-11-26 06:56:25,044 | INFO     | [job] retrieve thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:25,044 | INFO     | [job] queue monitor thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:25,122 | INFO     | [data] control thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:25,161 | INFO     | all payload control threads have been joined
[2025-11-26 07:57:17] 2025-11-26 06:56:25,518 | INFO     | all job control threads have been joined
[2025-11-26 07:57:17] 2025-11-26 06:56:25,636 | INFO     | [payload] validate_post thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:25,721 | INFO     | [job] job monitor thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:25,902 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:26,044 | INFO     | [data] copytool_out thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:26,066 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:26,112 | INFO     | [job] validate thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:26,167 | INFO     | [payload] control thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:26,198 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:26,242 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:26,442 | INFO     | [payload] failed_post thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:26,524 | INFO     | [job] control thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:26,543 | INFO     | [data] copytool_in thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:28,045 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 07:57:17] 2025-11-26 06:56:53,758 | INFO     | PID=3126164 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 07:57:17] 2025-11-26 06:56:53,758 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 07:57:17] 2025-11-26 06:56:53,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 07:57:17] 2025-11-26 06:56:53,758 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 07:57:17] 2025-11-26 06:57:10,948 | INFO     | [monitor] cgroup control has ended
[2025-11-26 07:57:17] 2025-11-26 06:57:11,954 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139811427559232)>', '<ExcThread(monitor, started 139810555545344)>']
[2025-11-26 07:57:17] 2025-11-26 06:57:12,860 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 07:57:17] 2025-11-26 06:57:12,861 | INFO     | [monitor] control thread has ended
[2025-11-26 07:57:17] 2025-11-26 06:57:16,980 | INFO     | all workflow threads have been joined
[2025-11-26 07:57:17] 2025-11-26 06:57:16,981 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 07:57:17] 2025-11-26 06:57:16,981 | INFO     | traces error code: 0
[2025-11-26 07:57:17] 2025-11-26 06:57:16,982 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 07:57:17] 2025-11-26 06:57:17,026 [wrapper] ==== pilot stdout END ====
[2025-11-26 07:57:17] 2025-11-26 06:57:17,030 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 07:57:17] 2025-11-26 06:57:17,033 [wrapper] pilotpid: 3126164
[2025-11-26 07:57:17] 2025-11-26 06:57:17,035 [wrapper] Pilot exit status: 0
[2025-11-26 07:57:17] 2025-11-26 06:57:17,042 [wrapper] pandaids: 6895417697
[2025-11-26 07:57:17] 2025-11-26 06:57:17,059 [wrapper] cleanup supervisor_pilot 3126170 3126165
[2025-11-26 07:57:17] 2025-11-26 06:57:17,063 [wrapper] Test setup, not cleaning
[2025-11-26 07:57:17] 2025-11-26 06:57:17,066 [wrapper] apfmon messages muted
[2025-11-26 07:57:17] 2025-11-26 06:57:17,068 [wrapper] ==== wrapper stdout END ====
[2025-11-26 07:57:17] 2025-11-26 06:57:17,071 [wrapper] ==== wrapper stderr END ====
[2025-11-26 07:57:17]  *** Error codes and diagnostics ***
[2025-11-26 07:57:17]     "exeErrorCode": 65,
[2025-11-26 07:57:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 07:57:17]     "pilotErrorCode": 1305,
[2025-11-26 07:57:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 07:57:17]  *** Listing of results directory ***
[2025-11-26 07:57:17] total 403776
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc    576529 Nov 24 08:53 pilot3.tar.gz
[2025-11-26 07:57:17] -rwx------ 1 boinc boinc     36292 Nov 24 09:13 runpilot2-wrapper.sh
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc      5112 Nov 24 09:13 queuedata.json
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc       100 Nov 26 07:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 07:57:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 07:52 run_atlas
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc       105 Nov 26 07:52 job.xml
[2025-11-26 07:57:17] -rw-r--r-- 2 boinc boinc 409279942 Nov 26 07:52 EVNT.47483658._001272.pool.root.1
[2025-11-26 07:57:17] -rw-r--r-- 2 boinc boinc    590100 Nov 26 07:52 input.tar.gz
[2025-11-26 07:57:17] -rw-r--r-- 2 boinc boinc     15847 Nov 26 07:52 start_atlas.sh
[2025-11-26 07:57:17] drwxrwx--x 2 boinc boinc      4096 Nov 26 07:52 shared
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc         0 Nov 26 07:52 boinc_setup_complete
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc      6196 Nov 26 07:52 init_data.xml
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc         0 Nov 26 07:52 boinc_lockfile
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc      2782 Nov 26 07:52 pandaJob.out
[2025-11-26 07:57:17] -rw------- 1 boinc boinc    991877 Nov 26 07:53 agis_schedconf.cvmfs.json
[2025-11-26 07:57:17] -rw------- 1 boinc boinc   1516240 Nov 26 07:53 agis_ddmendpoints.agis.ALL.json
[2025-11-26 07:57:17] drwx------ 5 boinc boinc      4096 Nov 26 07:53 pilot3
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc       523 Nov 26 07:54 boinc_task_state.xml
[2025-11-26 07:57:17] -rw------- 1 boinc boinc       954 Nov 26 07:54 memory_monitor_summary.json
[2025-11-26 07:57:17] -rw------- 1 boinc boinc     55706 Nov 26 07:54 log.47556149._002581.job.log.tgz.1
[2025-11-26 07:57:17] -rw------- 1 boinc boinc        95 Nov 26 07:56 pilot_heartbeat.json
[2025-11-26 07:57:17] -rw------- 1 boinc boinc      8399 Nov 26 07:56 heartbeat.json
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc        23 Nov 26 07:57 wrapper_checkpoint.txt
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc      8192 Nov 26 07:57 boinc_mmap_file
[2025-11-26 07:57:17] -rw------- 1 boinc boinc      4752 Nov 26 07:57 pilotlog.txt
[2025-11-26 07:57:17] -rw------- 1 boinc boinc     93135 Nov 26 07:57 log.47556149._002581.job.log.1
[2025-11-26 07:57:17] -rw------- 1 boinc boinc       186 Nov 26 07:57 output.list
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc       620 Nov 26 07:57 runtime_log
[2025-11-26 07:57:17] -rw------- 1 boinc boinc    163840 Nov 26 07:57 result.tar.gz
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc      8744 Nov 26 07:57 runtime_log.err
[2025-11-26 07:57:17] -rw------- 1 boinc boinc       649 Nov 26 07:57 TQ2KDmGsgh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHyIKDmG65fOn.diag
[2025-11-26 07:57:17] -rw-r--r-- 1 boinc boinc      8471 Nov 26 07:57 stderr.txt
[2025-11-26 07:57:17] No HITS result produced
[2025-11-26 07:57:17]  *** Contents of shared directory: ***
[2025-11-26 07:57:17] total 400444
[2025-11-26 07:57:17] -rw-r--r-- 2 boinc boinc 409279942 Nov 26 07:52 ATLAS.root_0
[2025-11-26 07:57:17] -rw-r--r-- 2 boinc boinc    590100 Nov 26 07:52 input.tar.gz
[2025-11-26 07:57:17] -rw-r--r-- 2 boinc boinc     15847 Nov 26 07:52 start_atlas.sh
[2025-11-26 07:57:17] -rw------- 1 boinc boinc    163840 Nov 26 07:57 result.tar.gz
07:57:18 (3122428): run_atlas exited; CPU time 31.789962
07:57:18 (3122428): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN