Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:02:20 (3164075): wrapper (7.7.26015): starting
08:02:20 (3164075): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 08:02:20] Arguments: --nthreads 3
[2025-11-26 08:02:20] Threads: 3
[2025-11-26 08:02:20] Checking for CVMFS
[2025-11-26 08:02:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:02:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:02:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:02:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:02:20] 2.9.2.0 2184780 452 72884 153312 0 88 35569212 36864001 0 130560 0 2917009 99.999 14448 29789 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 08:02:20] CVMFS is ok
[2025-11-26 08:02:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:02:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:02:20] Further information can be found at the LHC@home message board.
[2025-11-26 08:02:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:02:20] Checking for apptainer binary...
[2025-11-26 08:02:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:02:20] Running /usr/bin/apptainer --version
[2025-11-26 08:02:20] apptainer version 1.4.1-1.1
[2025-11-26 08:02:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:02:20] thA335
[2025-11-26 08:02:20] apptainer works
[2025-11-26 08:02:20] Set ATHENA_PROC_NUMBER=3
[2025-11-26 08:02:20] Set ATHENA_CORE_NUMBER=3
[2025-11-26 08:02:20] Starting ATLAS job with PandaID=6896765537
[2025-11-26 08:02:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:06:37]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:06:37] 2025-11-26 07:05:49,120 | INFO     | update_server=False
[2025-11-26 08:06:37] 2025-11-26 07:05:49,120 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:06:37] 2025-11-26 07:05:49,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:06:37] 2025-11-26 07:05:49,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:06:37] 2025-11-26 07:05:49,120 | INFO     | aborting loop
[2025-11-26 08:06:37] 2025-11-26 07:05:49,845 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:06:37] 2025-11-26 07:05:49,971 | INFO     | all job control threads have been joined
[2025-11-26 08:06:37] 2025-11-26 07:05:50,095 | INFO     | all data control threads have been joined
[2025-11-26 08:06:37] 2025-11-26 07:05:50,126 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:50,127 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:50,127 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:50,202 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:50,525 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:50,525 | INFO     | all payload control threads have been joined
[2025-11-26 08:06:37] 2025-11-26 07:05:50,977 | INFO     | [job] control thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:50,996 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:51,101 | INFO     | [data] control thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:51,392 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:51,395 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:51,512 | INFO     | [job] validate thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:51,532 | INFO     | [payload] control thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:51,582 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:51,584 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:51,852 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:05:52,151 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:06:37] 2025-11-26 07:05:56,158 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:06:37] 2025-11-26 07:06:19,177 | INFO     | PID=3167802 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:06:37] 2025-11-26 07:06:19,177 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:06:37] 2025-11-26 07:06:19,177 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:06:37] 2025-11-26 07:06:19,178 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:06:37] 2025-11-26 07:06:30,248 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:06:37] 2025-11-26 07:06:32,018 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139767605675840)>', '<ExcThread(monitor, started 139767253542656)>']
[2025-11-26 08:06:37] 2025-11-26 07:06:32,244 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:06:37] 2025-11-26 07:06:32,244 | INFO     | [monitor] control thread has ended
[2025-11-26 08:06:37] 2025-11-26 07:06:37,044 | INFO     | all workflow threads have been joined
[2025-11-26 08:06:37] 2025-11-26 07:06:37,044 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:06:37] 2025-11-26 07:06:37,045 | INFO     | traces error code: 0
[2025-11-26 08:06:37] 2025-11-26 07:06:37,045 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:06:37] 2025-11-26 07:06:37,090 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:06:37] 2025-11-26 07:06:37,093 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:06:37] 2025-11-26 07:06:37,096 [wrapper] pilotpid: 3167802
[2025-11-26 08:06:37] 2025-11-26 07:06:37,099 [wrapper] Pilot exit status: 0
[2025-11-26 08:06:37] 2025-11-26 07:06:37,105 [wrapper] pandaids: 6896765537
[2025-11-26 08:06:37] 2025-11-26 07:06:37,122 [wrapper] cleanup supervisor_pilot 3167808 3167803
[2025-11-26 08:06:37] 2025-11-26 07:06:37,124 [wrapper] Test setup, not cleaning
[2025-11-26 08:06:37] 2025-11-26 07:06:37,127 [wrapper] apfmon messages muted
[2025-11-26 08:06:37] 2025-11-26 07:06:37,129 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:06:37] 2025-11-26 07:06:37,132 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:06:37]  *** Error codes and diagnostics ***
[2025-11-26 08:06:37]     "exeErrorCode": 65,
[2025-11-26 08:06:37]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 08:06:37]     "pilotErrorCode": 1305,
[2025-11-26 08:06:37]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 08:06:37]  *** Listing of results directory ***
[2025-11-26 08:06:37] total 403848
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc    576529 Nov 25 10:39 pilot3.tar.gz
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc      5112 Nov 25 10:41 queuedata.json
[2025-11-26 08:06:37] -rwx------ 1 boinc boinc     36292 Nov 25 10:42 runpilot2-wrapper.sh
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc       100 Nov 26 08:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:06:37] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 08:02 run_atlas
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc       105 Nov 26 08:02 job.xml
[2025-11-26 08:06:37] -rw-r--r-- 2 boinc boinc 409350155 Nov 26 08:02 EVNT.47483658._004269.pool.root.1
[2025-11-26 08:06:37] -rw-r--r-- 2 boinc boinc    590103 Nov 26 08:02 input.tar.gz
[2025-11-26 08:06:37] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:02 start_atlas.sh
[2025-11-26 08:06:37] drwxrwx--x 2 boinc boinc      4096 Nov 26 08:02 shared
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:02 boinc_setup_complete
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc      6196 Nov 26 08:02 init_data.xml
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:02 boinc_lockfile
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc      2784 Nov 26 08:02 pandaJob.out
[2025-11-26 08:06:37] -rw------- 1 boinc boinc    991877 Nov 26 08:02 agis_schedconf.cvmfs.json
[2025-11-26 08:06:37] -rw------- 1 boinc boinc   1516240 Nov 26 08:02 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:06:37] drwx------ 5 boinc boinc      4096 Nov 26 08:02 pilot3
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc       523 Nov 26 08:03 boinc_task_state.xml
[2025-11-26 08:06:37] -rw------- 1 boinc boinc       958 Nov 26 08:03 memory_monitor_summary.json
[2025-11-26 08:06:37] -rw------- 1 boinc boinc     54814 Nov 26 08:03 log.47556185._000323.job.log.tgz.1
[2025-11-26 08:06:37] -rw------- 1 boinc boinc        95 Nov 26 08:05 pilot_heartbeat.json
[2025-11-26 08:06:37] -rw------- 1 boinc boinc      8408 Nov 26 08:05 heartbeat.json
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc      8192 Nov 26 08:06 boinc_mmap_file
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc        23 Nov 26 08:06 wrapper_checkpoint.txt
[2025-11-26 08:06:37] -rw------- 1 boinc boinc      4752 Nov 26 08:06 pilotlog.txt
[2025-11-26 08:06:37] -rw------- 1 boinc boinc     93873 Nov 26 08:06 log.47556185._000323.job.log.1
[2025-11-26 08:06:37] -rw------- 1 boinc boinc       186 Nov 26 08:06 output.list
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc       620 Nov 26 08:06 runtime_log
[2025-11-26 08:06:37] -rw------- 1 boinc boinc    163840 Nov 26 08:06 result.tar.gz
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc      8744 Nov 26 08:06 runtime_log.err
[2025-11-26 08:06:37] -rw------- 1 boinc boinc       649 Nov 26 08:06 ODKLDmDk4h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcIMKDmvmXJdm.diag
[2025-11-26 08:06:37] -rw-r--r-- 1 boinc boinc      7790 Nov 26 08:06 stderr.txt
[2025-11-26 08:06:37] No HITS result produced
[2025-11-26 08:06:37]  *** Contents of shared directory: ***
[2025-11-26 08:06:37] total 400520
[2025-11-26 08:06:37] -rw-r--r-- 2 boinc boinc 409350155 Nov 26 08:02 ATLAS.root_0
[2025-11-26 08:06:37] -rw-r--r-- 2 boinc boinc    590103 Nov 26 08:02 input.tar.gz
[2025-11-26 08:06:37] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:02 start_atlas.sh
[2025-11-26 08:06:37] -rw------- 1 boinc boinc    163840 Nov 26 08:06 result.tar.gz
08:06:38 (3164075): run_atlas exited; CPU time 31.178989
08:06:38 (3164075): called boinc_finish(0)

</stderr_txt>
]]>

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