Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:06:41 (3184882): wrapper (7.7.26015): starting
08:06:41 (3184882): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 08:06:41] Arguments: --nthreads 3
[2025-11-26 08:06:41] Threads: 3
[2025-11-26 08:06:41] Checking for CVMFS
[2025-11-26 08:06:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:06:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:06:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:06:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:06:42] 2.9.2.0 2184780 456 72328 153312 0 88 35569212 36864001 0 130560 0 2979636 99.999 14448 29728 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 08:06:42] CVMFS is ok
[2025-11-26 08:06:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:06:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:06:42] Further information can be found at the LHC@home message board.
[2025-11-26 08:06:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:06:42] Checking for apptainer binary...
[2025-11-26 08:06:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:06:42] Running /usr/bin/apptainer --version
[2025-11-26 08:06:42] apptainer version 1.4.1-1.1
[2025-11-26 08:06:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:06:42] thA335
[2025-11-26 08:06:42] apptainer works
[2025-11-26 08:06:42] Set ATHENA_PROC_NUMBER=3
[2025-11-26 08:06:42] Set ATHENA_CORE_NUMBER=3
[2025-11-26 08:06:42] Starting ATLAS job with PandaID=6896255070
[2025-11-26 08:06:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:11:01]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:11:01] 2025-11-26 07:10:13,608 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:11:01] 2025-11-26 07:10:13,608 | INFO     | update_server=False
[2025-11-26 08:11:01] 2025-11-26 07:10:13,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:11:01] 2025-11-26 07:10:13,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:11:01] 2025-11-26 07:10:13,608 | INFO     | aborting loop
[2025-11-26 08:11:01] 2025-11-26 07:10:13,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:11:01] 2025-11-26 07:10:14,302 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:11:01] 2025-11-26 07:10:14,392 | INFO     | all job control threads have been joined
[2025-11-26 08:11:01] 2025-11-26 07:10:14,543 | INFO     | all data control threads have been joined
[2025-11-26 08:11:01] 2025-11-26 07:10:14,614 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:14,615 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:14,615 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:14,818 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:14,989 | INFO     | all payload control threads have been joined
[2025-11-26 08:11:01] 2025-11-26 07:10:15,273 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:15,398 | INFO     | [job] control thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:15,546 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:15,549 | INFO     | [data] control thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:15,840 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:15,856 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:15,918 | INFO     | [job] validate thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:15,996 | INFO     | [payload] control thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:15,997 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:16,047 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:16,308 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:16,604 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:11:01] 2025-11-26 07:10:20,611 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:11:01] 2025-11-26 07:10:43,534 | INFO     | PID=3188615 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:11:01] 2025-11-26 07:10:43,534 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:11:01] 2025-11-26 07:10:43,534 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:11:01] 2025-11-26 07:10:43,534 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:11:01] 2025-11-26 07:10:54,687 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:11:01] 2025-11-26 07:10:56,474 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139990663292736)>', '<ExcThread(monitor, started 139989895608064)>']
[2025-11-26 08:11:01] 2025-11-26 07:10:56,605 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:11:01] 2025-11-26 07:10:56,605 | INFO     | [monitor] control thread has ended
[2025-11-26 08:11:01] 2025-11-26 07:11:01,500 | INFO     | all workflow threads have been joined
[2025-11-26 08:11:01] 2025-11-26 07:11:01,501 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:11:01] 2025-11-26 07:11:01,501 | INFO     | traces error code: 0
[2025-11-26 08:11:01] 2025-11-26 07:11:01,502 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:11:01] 2025-11-26 07:11:01,606 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:11:01] 2025-11-26 07:11:01,610 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:11:01] 2025-11-26 07:11:01,613 [wrapper] pilotpid: 3188615
[2025-11-26 08:11:01] 2025-11-26 07:11:01,615 [wrapper] Pilot exit status: 0
[2025-11-26 08:11:01] 2025-11-26 07:11:01,622 [wrapper] pandaids: 6896255070
[2025-11-26 08:11:01] 2025-11-26 07:11:01,641 [wrapper] cleanup supervisor_pilot 3188621 3188616
[2025-11-26 08:11:01] 2025-11-26 07:11:01,643 [wrapper] Test setup, not cleaning
[2025-11-26 08:11:01] 2025-11-26 07:11:01,646 [wrapper] apfmon messages muted
[2025-11-26 08:11:01] 2025-11-26 07:11:01,648 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:11:01] 2025-11-26 07:11:01,650 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:11:01]  *** Error codes and diagnostics ***
[2025-11-26 08:11:01]     "exeErrorCode": 65,
[2025-11-26 08:11:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 08:11:01]     "pilotErrorCode": 1305,
[2025-11-26 08:11:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 08:11:01]  *** Listing of results directory ***
[2025-11-26 08:11:01] total 405276
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc    576529 Nov 24 23:04 pilot3.tar.gz
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc      5112 Nov 24 23:45 queuedata.json
[2025-11-26 08:11:01] -rwx------ 1 boinc boinc     36292 Nov 24 23:49 runpilot2-wrapper.sh
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc       100 Nov 26 08:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:11:01] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 08:06 run_atlas
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc       105 Nov 26 08:06 job.xml
[2025-11-26 08:11:01] -rw-r--r-- 2 boinc boinc 410808807 Nov 26 08:06 EVNT.47483658._001438.pool.root.1
[2025-11-26 08:11:01] -rw-r--r-- 2 boinc boinc    590108 Nov 26 08:06 input.tar.gz
[2025-11-26 08:11:01] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:06 start_atlas.sh
[2025-11-26 08:11:01] drwxrwx--x 2 boinc boinc      4096 Nov 26 08:06 shared
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:06 boinc_setup_complete
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc      6196 Nov 26 08:06 init_data.xml
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:06 boinc_lockfile
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc      2786 Nov 26 08:06 pandaJob.out
[2025-11-26 08:11:01] -rw------- 1 boinc boinc    991877 Nov 26 08:06 agis_schedconf.cvmfs.json
[2025-11-26 08:11:01] -rw------- 1 boinc boinc   1516240 Nov 26 08:06 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:11:01] drwx------ 5 boinc boinc      4096 Nov 26 08:06 pilot3
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc       523 Nov 26 08:07 boinc_task_state.xml
[2025-11-26 08:11:01] -rw------- 1 boinc boinc       954 Nov 26 08:08 memory_monitor_summary.json
[2025-11-26 08:11:01] -rw------- 1 boinc boinc     56111 Nov 26 08:08 log.47556149._004247.job.log.tgz.1
[2025-11-26 08:11:01] -rw------- 1 boinc boinc        95 Nov 26 08:09 pilot_heartbeat.json
[2025-11-26 08:11:01] -rw------- 1 boinc boinc      8401 Nov 26 08:10 heartbeat.json
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc      8192 Nov 26 08:10 boinc_mmap_file
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc        23 Nov 26 08:10 wrapper_checkpoint.txt
[2025-11-26 08:11:01] -rw------- 1 boinc boinc      4752 Nov 26 08:11 pilotlog.txt
[2025-11-26 08:11:01] -rw------- 1 boinc boinc     93764 Nov 26 08:11 log.47556149._004247.job.log.1
[2025-11-26 08:11:01] -rw------- 1 boinc boinc       186 Nov 26 08:11 output.list
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc       620 Nov 26 08:11 runtime_log
[2025-11-26 08:11:01] -rw------- 1 boinc boinc    174080 Nov 26 08:11 result.tar.gz
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc      8744 Nov 26 08:11 runtime_log.err
[2025-11-26 08:11:01] -rw------- 1 boinc boinc       649 Nov 26 08:11 RjjKDmJYuh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIyLKDmQK1uln.diag
[2025-11-26 08:11:01] -rw-r--r-- 1 boinc boinc      7893 Nov 26 08:11 stderr.txt
[2025-11-26 08:11:01] No HITS result produced
[2025-11-26 08:11:01]  *** Contents of shared directory: ***
[2025-11-26 08:11:01] total 401952
[2025-11-26 08:11:01] -rw-r--r-- 2 boinc boinc 410808807 Nov 26 08:06 ATLAS.root_0
[2025-11-26 08:11:01] -rw-r--r-- 2 boinc boinc    590108 Nov 26 08:06 input.tar.gz
[2025-11-26 08:11:01] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:06 start_atlas.sh
[2025-11-26 08:11:01] -rw------- 1 boinc boinc    174080 Nov 26 08:11 result.tar.gz
08:11:03 (3184882): run_atlas exited; CPU time 31.972018
08:11:03 (3184882): called boinc_finish(0)

</stderr_txt>
]]>

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