Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:54:56 (3572636): wrapper (7.7.26015): starting
11:54:56 (3572636): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:54:56] Arguments: --nthreads 8
[2025-11-26 11:54:56] Threads: 8
[2025-11-26 11:54:56] Checking for CVMFS
[2025-11-26 11:54:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:54:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:54:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:54:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:54:57] 2.13.3.0 11334 30317 351580 153328 3 570 24829037 32935191 26496 16776704 0 131267593 99.503 176565868 40885 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 11:54:57] CVMFS is ok
[2025-11-26 11:54:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:54:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:54:57] Further information can be found at the LHC@home message board.
[2025-11-26 11:54:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:54:57] Checking for apptainer binary...
[2025-11-26 11:54:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:54:57] Running /usr/bin/apptainer --version
[2025-11-26 11:54:57] apptainer version 1.4.4-1.el9
[2025-11-26 11:54:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:54:57] c6-4-5-2.aglt2.org
[2025-11-26 11:54:57] apptainer works
[2025-11-26 11:54:57] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:54:57] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:54:57] Starting ATLAS job with PandaID=6891106316
[2025-11-26 11:54:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:58:21]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:58:21] 2025-11-27 17:57:46,579 | INFO     | monitor loop #5934: job 0:6891106316 is in state 'finished'
[2025-11-27 12:58:21] 2025-11-27 17:57:46,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,278 | INFO     | time since job start (90151s) is within the limit (172800.0s)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,357 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 12:58:21] 2025-11-27 17:57:47,363 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3172.1432656250004
[2025-11-27 12:58:21] 2025-11-27 17:57:47,372 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891106316/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,373 | INFO     | extracted standard info from prmon json
[2025-11-27 12:58:21] 2025-11-27 17:57:47,373 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:58:21] 2025-11-27 17:57:47,373 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:58:21] 2025-11-27 17:57:47,391 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:58:21] 2025-11-27 17:57:47,392 | INFO     | sum of square deviations: 999115469756.6294
[2025-11-27 12:58:21] 2025-11-27 17:57:47,426 | INFO     | sum of deviations: 4416945000332.054
[2025-11-27 12:58:21] 2025-11-27 17:57:47,426 | INFO     | mean x: 1764221176.648612
[2025-11-27 12:58:21] 2025-11-27 17:57:47,427 | INFO     | mean y: 2999555.564658091
[2025-11-27 12:58:21] 2025-11-27 17:57:47,427 | INFO     | intersect: -7796367125.8221855
[2025-11-27 12:58:21] 2025-11-27 17:57:47,428 | INFO     | chi2: 8.608781505494388
[2025-11-27 12:58:21] 2025-11-27 17:57:47,430 | INFO     | sum of square deviations: 989003237454.5192
[2025-11-27 12:58:21] 2025-11-27 17:57:47,474 | INFO     | sum of deviations: 4958265763918.922
[2025-11-27 12:58:21] 2025-11-27 17:57:47,474 | INFO     | mean x: 1764221024.1508152
[2025-11-27 12:58:21] 2025-11-27 17:57:47,474 | INFO     | mean y: 3007718.9327445654
[2025-11-27 12:58:21] 2025-11-27 17:57:47,474 | INFO     | intersect: -8841732492.98717
[2025-11-27 12:58:21] 2025-11-27 17:57:47,476 | INFO     | chi2: 5.1837330514331885
[2025-11-27 12:58:21] 2025-11-27 17:57:47,476 | INFO     | current chi2=5.1837330514331885 (change=39.78551961012402 %)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,477 | INFO     | sum of square deviations: 978959471552.3945
[2025-11-27 12:58:21] 2025-11-27 17:57:47,522 | INFO     | sum of deviations: 5246107554512.607
[2025-11-27 12:58:21] 2025-11-27 17:57:47,522 | INFO     | mean x: 1764220871.6530335
[2025-11-27 12:58:21] 2025-11-27 17:57:47,523 | INFO     | mean y: 3012086.030674847
[2025-11-27 12:58:21] 2025-11-27 17:57:47,523 | INFO     | intersect: -9451202017.369467
[2025-11-27 12:58:21] 2025-11-27 17:57:47,524 | INFO     | chi2: 3.9112805434664932
[2025-11-27 12:58:21] 2025-11-27 17:57:47,524 | INFO     | current chi2=3.9112805434664932 (change=24.54703001372515 %)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,524 | INFO     | right removable region: 1466
[2025-11-27 12:58:21] 2025-11-27 17:57:47,526 | INFO     | sum of square deviations: 989002653074.5192
[2025-11-27 12:58:21] 2025-11-27 17:57:47,571 | INFO     | sum of deviations: 3915144305839.505
[2025-11-27 12:58:21] 2025-11-27 17:57:47,571 | INFO     | mean x: 1764221329.1508152
[2025-11-27 12:58:21] 2025-11-27 17:57:47,571 | INFO     | mean y: 3007119.8716032607
[2025-11-27 12:58:21] 2025-11-27 17:57:47,571 | INFO     | intersect: -6980979292.695661
[2025-11-27 12:58:21] 2025-11-27 17:57:47,573 | INFO     | chi2: 5.856542998680604
[2025-11-27 12:58:21] 2025-11-27 17:57:47,573 | INFO     | current chi2=5.856542998680604 (change=31.970128467742164 %)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,575 | INFO     | sum of square deviations: 978958392340.6991
[2025-11-27 12:58:21] 2025-11-27 17:57:47,618 | INFO     | sum of deviations: 3799279111980.428
[2025-11-27 12:58:21] 2025-11-27 17:57:47,618 | INFO     | mean x: 1764221481.6523519
[2025-11-27 12:58:21] 2025-11-27 17:57:47,618 | INFO     | mean y: 3008878.6871165643
[2025-11-27 12:58:21] 2025-11-27 17:57:47,618 | INFO     | intersect: -6843829430.878374
[2025-11-27 12:58:21] 2025-11-27 17:57:47,620 | INFO     | chi2: 5.790852460256667
[2025-11-27 12:58:21] 2025-11-27 17:57:47,620 | INFO     | current chi2=5.790852460256667 (change=1.1216606526877135 %)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,620 | INFO     | left removable region: 20
[2025-11-27 12:58:21] 2025-11-27 17:57:47,622 | INFO     | sum of square deviations: 937516165881.4178
[2025-11-27 12:58:21] 2025-11-27 17:57:47,663 | INFO     | sum of deviations: 4481128387724.626
[2025-11-27 12:58:21] 2025-11-27 17:57:47,664 | INFO     | mean x: 1764221451.1590595
[2025-11-27 12:58:21] 2025-11-27 17:57:47,664 | INFO     | mean y: 3025015.7233748273
[2025-11-27 12:58:21] 2025-11-27 17:57:47,664 | INFO     | intersect: -8429579257.920215
[2025-11-27 12:58:21] 2025-11-27 17:57:47,665 | INFO     | chi2: 0.9115125311814674
[2025-11-27 12:58:21] 2025-11-27 17:57:47,666 | INFO     | current memory leak: 4.78 B/s (using 1446 data points, chi2=0.91)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,667 | INFO     | could have reported an average CPU frequency of 3165 MHz (53 samples)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,667 | INFO     | ..............................
[2025-11-27 12:58:21] 2025-11-27 17:57:47,668 | INFO     | . Timing measurements:
[2025-11-27 12:58:21] 2025-11-27 17:57:47,668 | INFO     | . get job = 0 s
[2025-11-27 12:58:21] 2025-11-27 17:57:47,668 | INFO     | . initial setup = 3 s
[2025-11-27 12:58:21] 2025-11-27 17:57:47,668 | INFO     | . payload setup = 11 s
[2025-11-27 12:58:21] 2025-11-27 17:57:47,668 | INFO     | . stage-in = 0 s
[2025-11-27 12:58:21] 2025-11-27 17:57:47,668 | INFO     | . payload execution = 90092 s
[2025-11-27 12:58:21] 2025-11-27 17:57:47,668 | INFO     | . stage-out = 4 s
[2025-11-27 12:58:21] 2025-11-27 17:57:47,668 | INFO     | . log creation = 1 s
[2025-11-27 12:58:21] 2025-11-27 17:57:47,668 | INFO     | ..............................
[2025-11-27 12:58:21] 2025-11-27 17:57:47,751 | INFO     | 
[2025-11-27 12:58:21] 2025-11-27 17:57:47,751 | INFO     | job summary report
[2025-11-27 12:58:21] 2025-11-27 17:57:47,751 | INFO     | --------------------------------------------------
[2025-11-27 12:58:21] 2025-11-27 17:57:47,751 | INFO     | PanDA job id: 6891106316
[2025-11-27 12:58:21] 2025-11-27 17:57:47,751 | INFO     | task id: 47483661
[2025-11-27 12:58:21] 2025-11-27 17:57:47,751 | INFO     | errors: (none)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,751 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:58:21] 2025-11-27 17:57:47,751 | INFO     | pilot state: finished 
[2025-11-27 12:58:21] 2025-11-27 17:57:47,751 | INFO     | transexitcode: 0
[2025-11-27 12:58:21] 2025-11-27 17:57:47,751 | INFO     | exeerrorcode: 0
[2025-11-27 12:58:21] 2025-11-27 17:57:47,751 | INFO     | exeerrordiag: 
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | exitcode: 0
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | exitmsg: OK
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | cpuconsumptiontime: 222132 s
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | nevents: 1000
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | neventsw: 0
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | pid: 3607576
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | pgrp: 3607576
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | corecount: 8
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | event service: False
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | sizes: {0: 2284133, 1: 2284332, 8: 2284594, 11: 2284622, 90108: 2353585, 90109: 2353584, 90115: 2362818, 90132: 2363104}
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | --------------------------------------------------
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | 
[2025-11-27 12:58:21] 2025-11-27 17:57:47,752 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 12:58:21] 2025-11-27 17:57:47,786 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,786 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,786 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,786 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,786 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,787 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:58:21] 2025-11-27 17:57:47,788 | INFO     | job 6891106316 has completed (purged errors)
[2025-11-27 12:58:21] 2025-11-27 17:57:47,788 | INFO     | overall cleanup function is called
[2025-11-27 12:58:21] 2025-11-27 17:57:48,855 | INFO     | --- collectZombieJob: --- 10, [3607576]
[2025-11-27 12:58:21] 2025-11-27 17:57:48,855 | INFO     | zombie collector waiting for pid 3607576
[2025-11-27 12:58:21] 2025-11-27 17:57:48,855 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:58:21] 2025-11-27 17:57:48,855 | INFO     | collected zombie processes
[2025-11-27 12:58:21] 2025-11-27 17:57:48,855 | INFO     | will attempt to kill all subprocesses of pid=3607576
[2025-11-27 12:58:21] 2025-11-27 17:57:49,474 | INFO     | process IDs to be killed: [3607576] (in reverse order)
[2025-11-27 12:58:21] 2025-11-27 17:57:49,695 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:58:21] 2025-11-27 17:57:49,695 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:58:21] 2025-11-27 17:57:49,736 | INFO     | did not find any defunct processes belonging to 3607576
[2025-11-27 12:58:21] 2025-11-27 17:57:49,769 | INFO     | did not find any defunct processes belonging to 3607576
[2025-11-27 12:58:21] 2025-11-27 17:57:49,770 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:58:21] 2025-11-27 17:57:49,770 | INFO     | ready for new job
[2025-11-27 12:58:21] 2025-11-27 17:57:49,770 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:58:21] 2025-11-27 17:57:49,775 | INFO     | ***************************************
[2025-11-27 12:58:21] 2025-11-27 17:57:49,775 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:58:21] 2025-11-27 17:57:49,775 | INFO     | ***************************************
[2025-11-27 12:58:21] 2025-11-27 17:57:49,775 | INFO     | 
[2025-11-27 12:58:21] 2025-11-27 17:57:49,778 | INFO     | architecture information:
[2025-11-27 12:58:21] 2025-11-27 17:57:49,778 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:58:21] 2025-11-27 17:57:49,827 | INFO     | cat /etc/os-release:
[2025-11-27 12:58:21] NAME="CentOS Linux"
[2025-11-27 12:58:21] VERSION="7 (Core)"
[2025-11-27 12:58:21] ID="centos"
[2025-11-27 12:58:21] ID_LIKE="rhel fedora"
[2025-11-27 12:58:21] VERSION_ID="7"
[2025-11-27 12:58:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:58:21] ANSI_COLOR="0;31"
[2025-11-27 12:58:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:58:21] HOME_URL="https://www.centos.org/"
[2025-11-27 12:58:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:58:21] 
[2025-11-27 12:58:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:58:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:58:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:58:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:58:21] 
[2025-11-27 12:58:21] 2025-11-27 17:57:49,827 | INFO     | ***************************************
[2025-11-27 12:58:21] 2025-11-27 17:57:50,331 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 12:58:21] 2025-11-27 17:57:50,430 | INFO     | sufficient remaining disk space (70197968896 B)
[2025-11-27 12:58:21] 2025-11-27 17:57:50,430 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:58:21] 2025-11-27 17:57:50,430 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:58:21] 2025-11-27 17:57:50,431 | INFO     | update_server=False
[2025-11-27 12:58:21] 2025-11-27 17:57:50,431 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:58:21] 2025-11-27 17:57:50,431 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:58:21] 2025-11-27 17:57:50,431 | INFO     | aborting loop
[2025-11-27 12:58:21] 2025-11-27 17:57:50,557 | INFO     | all job control threads have been joined
[2025-11-27 12:58:21] 2025-11-27 17:57:50,775 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:58:21] 2025-11-27 17:57:51,000 | INFO     | all data control threads have been joined
[2025-11-27 12:58:21] 2025-11-27 17:57:51,001 | INFO     | all payload control threads have been joined
[2025-11-27 12:58:21] 2025-11-27 17:57:51,437 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:51,449 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:51,563 | INFO     | [job] control thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:51,645 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:58:21] 2025-11-27 17:57:51,743 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:51,775 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:51,867 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:52,006 | INFO     | [data] control thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:52,007 | INFO     | [payload] control thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:52,203 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:52,320 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:52,405 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:58:21] 2025-11-27 17:57:52,472 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:52,511 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:52,770 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:58:21] 2025-11-27 17:57:52,840 | INFO     | [job] validate thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:53,660 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:53,776 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:54,789 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:58:21] 2025-11-27 17:57:55,528 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139703303210816)>', '<ExcThread(monitor, started 139702627706624)>']
[2025-11-27 12:58:21] 2025-11-27 17:58:00,554 | INFO     | all workflow threads have been joined
[2025-11-27 12:58:21] 2025-11-27 17:58:00,554 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:58:21] 2025-11-27 17:58:00,554 | INFO     | traces error code: 0
[2025-11-27 12:58:21] 2025-11-27 17:58:00,554 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:58:21] 2025-11-27 17:58:21,128 | INFO     | PID=3585734 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 12:58:21] 2025-11-27 17:58:21,128 | INFO     | .. there are 54 such processes running
[2025-11-27 12:58:21] 2025-11-27 17:58:21,128 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:58:21] 2025-11-27 17:58:21,128 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:58:21] 2025-11-27 17:58:21,128 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:58:21] 2025-11-27 17:58:21,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:58:21] 2025-11-27 17:58:21,129 | INFO     | [monitor] control thread has ended
[2025-11-27 12:58:21] 2025-11-27 17:58:21,434 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:58:21] 2025-11-27 17:58:21,457 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:58:21] 2025-11-27 17:58:21,470 [wrapper] pilotpid: 3585734
[2025-11-27 12:58:21] 2025-11-27 17:58:21,499 [wrapper] Pilot exit status: 0
[2025-11-27 12:58:21] 2025-11-27 17:58:21,542 [wrapper] pandaids: 6891106316
[2025-11-27 12:58:21] 2025-11-27 17:58:21,650 [wrapper] cleanup supervisor_pilot 3553710 3585735
[2025-11-27 12:58:21] 2025-11-27 17:58:21,653 [wrapper] Test setup, not cleaning
[2025-11-27 12:58:21] 2025-11-27 17:58:21,659 [wrapper] apfmon messages muted
[2025-11-27 12:58:21] 2025-11-27 17:58:21,662 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:58:21] 2025-11-27 17:58:21,664 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:58:21]  *** Error codes and diagnostics ***
[2025-11-27 12:58:21]     "exeErrorCode": 0,
[2025-11-27 12:58:21]     "exeErrorDiag": "",
[2025-11-27 12:58:21]     "pilotErrorCode": 0,
[2025-11-27 12:58:21]     "pilotErrorDiag": "",
[2025-11-27 12:58:21]  *** Listing of results directory ***
[2025-11-27 12:58:21] total 1324112
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 12:58:21] -rwx------. 1 boincer umatlas     36292 Nov 18 02:00 runpilot2-wrapper.sh
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas       100 Nov 26 11:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:58:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 11:54 run_atlas
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas       105 Nov 26 11:54 job.xml
[2025-11-27 12:58:21] -rw-r--r--. 2 boincer umatlas 409674587 Nov 26 11:54 EVNT.47483658._000257.pool.root.1
[2025-11-27 12:58:21] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 11:54 start_atlas.sh
[2025-11-27 12:58:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 11:54 shared
[2025-11-27 12:58:21] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 11:54 input.tar.gz
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas         0 Nov 26 11:54 boinc_lockfile
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 11:54 pandaJob.out
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas    991545 Nov 26 11:55 agis_schedconf.cvmfs.json
[2025-11-27 12:58:21] drwx------. 5 boincer umatlas      4096 Nov 26 11:55 pilot3
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas       533 Nov 27 12:42 boinc_task_state.xml
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas      6876 Nov 27 12:54 init_data.xml
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas 913213242 Nov 27 12:56 HITS.47483661._002270.pool.root.1
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas      1066 Nov 27 12:57 memory_monitor_summary.json
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:57 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas   2518445 Nov 27 12:57 log.47483661._002270.job.log.tgz.1
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas        95 Nov 27 12:57 pilot_heartbeat.json
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas      8650 Nov 27 12:57 heartbeat.json
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas       823 Nov 27 12:58 pilotlog.txt
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas  12026688 Nov 27 12:58 log.47483661._002270.job.log.1
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas       353 Nov 27 12:58 output.list
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:58 boinc_mmap_file
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:58 runtime_log
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas  14561280 Nov 27 12:58 result.tar.gz
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas      8704 Nov 27 12:58 runtime_log.err
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas       664 Nov 27 12:58 h6vNDmPsUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEQKODm4K1K7m.diag
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas        29 Nov 27 12:58 wrapper_checkpoint.txt
[2025-11-27 12:58:21] -rw-r--r--. 1 boincer umatlas     21340 Nov 27 12:58 stderr.txt
[2025-11-27 12:58:21] HITS file was successfully produced:
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas 913213242 Nov 27 12:56 shared/HITS.pool.root.1
[2025-11-27 12:58:21]  *** Contents of shared directory: ***
[2025-11-27 12:58:21] total 1306712
[2025-11-27 12:58:21] -rw-r--r--. 2 boincer umatlas 409674587 Nov 26 11:54 ATLAS.root_0
[2025-11-27 12:58:21] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 11:54 start_atlas.sh
[2025-11-27 12:58:21] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 11:54 input.tar.gz
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas 913213242 Nov 27 12:56 HITS.pool.root.1
[2025-11-27 12:58:21] -rw-------. 1 boincer umatlas  14561280 Nov 27 12:58 result.tar.gz
12:58:23 (3572636): run_atlas exited; CPU time 224929.371934
12:58:23 (3572636): called boinc_finish(0)

</stderr_txt>
]]>

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