Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:34:05 (1172741): wrapper (7.7.26015): starting
04:34:05 (1172741): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 04:34:05] Arguments: --nthreads 8
[2025-11-26 04:34:05] Threads: 8
[2025-11-26 04:34:05] Checking for CVMFS
[2025-11-26 04:34:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 04:34:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 04:34:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 04:34:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 04:34:07] 2.13.3.0 10982 29876 345576 153316 2 89 32869325 40960000 25467 16776704 0 148447076 99.696 117966359 39288 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 04:34:07] CVMFS is ok
[2025-11-26 04:34:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 04:34:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 04:34:07] Further information can be found at the LHC@home message board.
[2025-11-26 04:34:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 04:34:07] Checking for apptainer binary...
[2025-11-26 04:34:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 04:34:07] Running /usr/bin/apptainer --version
[2025-11-26 04:34:07] apptainer version 1.4.4-1.el9
[2025-11-26 04:34:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 04:34:08] c6-8-12-3.aglt2.org
[2025-11-26 04:34:08] apptainer works
[2025-11-26 04:34:08] Set ATHENA_PROC_NUMBER=8
[2025-11-26 04:34:08] Set ATHENA_CORE_NUMBER=8
[2025-11-26 04:34:08] Starting ATLAS job with PandaID=6896765393
[2025-11-26 04:34:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:27:03]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:27:03] 2025-11-27 03:26:28,305 | INFO     | monitor loop #4158: job 0:6896765393 is in state 'finished'
[2025-11-26 22:27:03] 2025-11-27 03:26:28,305 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:27:03] 2025-11-27 03:26:28,698 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 22:27:03] 2025-11-27 03:26:28,703 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3051.976464285715
[2025-11-26 22:27:03] 2025-11-27 03:26:28,714 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896765393/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:27:03] 2025-11-27 03:26:28,716 | INFO     | extracted standard info from prmon json
[2025-11-26 22:27:03] 2025-11-27 03:26:28,716 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:27:03] 2025-11-27 03:26:28,716 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:27:03] 2025-11-27 03:26:28,735 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:27:03] 2025-11-27 03:26:28,737 | INFO     | sum of square deviations: 361025790350.8846
[2025-11-26 22:27:03] 2025-11-27 03:26:28,757 | INFO     | sum of deviations: 2548326230854.1533
[2025-11-26 22:27:03] 2025-11-27 03:26:28,758 | INFO     | mean x: 1764181877.4895437
[2025-11-26 22:27:03] 2025-11-27 03:26:28,758 | INFO     | mean y: 2926399.741444867
[2025-11-26 22:27:03] 2025-11-27 03:26:28,758 | INFO     | intersect: -12449676917.142664
[2025-11-26 22:27:03] 2025-11-27 03:26:28,759 | INFO     | chi2: 7.047586500151052
[2025-11-26 22:27:03] 2025-11-27 03:26:28,760 | INFO     | sum of square deviations: 355902979235.9662
[2025-11-26 22:27:03] 2025-11-27 03:26:28,779 | INFO     | sum of deviations: 2915249490715.2217
[2025-11-26 22:27:03] 2025-11-27 03:26:28,780 | INFO     | mean x: 1764181724.9942694
[2025-11-26 22:27:03] 2025-11-27 03:26:28,780 | INFO     | mean y: 2937325.037249284
[2025-11-26 22:27:03] 2025-11-27 03:26:28,780 | INFO     | intersect: -14447714047.309877
[2025-11-26 22:27:03] 2025-11-27 03:26:28,781 | INFO     | chi2: 3.79178908332861
[2025-11-26 22:27:03] 2025-11-27 03:26:28,781 | INFO     | current chi2=3.79178908332861 (change=46.19733885852497 %)
[2025-11-26 22:27:03] 2025-11-27 03:26:28,782 | INFO     | sum of square deviations: 350828548106.4655
[2025-11-26 22:27:03] 2025-11-27 03:26:28,801 | INFO     | sum of deviations: 2965447626620.691
[2025-11-26 22:27:03] 2025-11-27 03:26:28,801 | INFO     | mean x: 1764181572.494242
[2025-11-26 22:27:03] 2025-11-27 03:26:28,801 | INFO     | mean y: 2938829.031669866
[2025-11-26 22:27:03] 2025-11-27 03:26:28,802 | INFO     | intersect: -14909154514.903912
[2025-11-26 22:27:03] 2025-11-27 03:26:28,803 | INFO     | chi2: 3.563964040326051
[2025-11-26 22:27:03] 2025-11-27 03:26:28,803 | INFO     | current chi2=3.563964040326051 (change=6.0083785779182515 %)
[2025-11-26 22:27:03] 2025-11-27 03:26:28,803 | INFO     | right removable region: 1041
[2025-11-26 22:27:03] 2025-11-27 03:26:28,804 | INFO     | sum of square deviations: 355902344225.96594
[2025-11-26 22:27:03] 2025-11-27 03:26:28,823 | INFO     | sum of deviations: 2174316253515.009
[2025-11-26 22:27:03] 2025-11-27 03:26:28,824 | INFO     | mean x: 1764182029.9942694
[2025-11-26 22:27:03] 2025-11-27 03:26:28,824 | INFO     | mean y: 2937527.168099331
[2025-11-26 22:27:03] 2025-11-27 03:26:28,824 | INFO     | intersect: -10774989969.539253
[2025-11-26 22:27:03] 2025-11-27 03:26:28,825 | INFO     | chi2: 3.8701747279167464
[2025-11-26 22:27:03] 2025-11-27 03:26:28,825 | INFO     | current chi2=3.8701747279167464 (change=45.08510498120461 %)
[2025-11-26 22:27:03] 2025-11-27 03:26:28,826 | INFO     | sum of square deviations: 350827724424.49036
[2025-11-26 22:27:03] 2025-11-27 03:26:28,846 | INFO     | sum of deviations: 2069498297539.018
[2025-11-26 22:27:03] 2025-11-27 03:26:28,846 | INFO     | mean x: 1764182182.4971209
[2025-11-26 22:27:03] 2025-11-27 03:26:28,846 | INFO     | mean y: 2940673.0057581575
[2025-11-26 22:27:03] 2025-11-27 03:26:28,846 | INFO     | intersect: -10403796791.131771
[2025-11-26 22:27:03] 2025-11-27 03:26:28,847 | INFO     | chi2: 3.623405786925
[2025-11-26 22:27:03] 2025-11-27 03:26:28,847 | INFO     | current chi2=3.623405786925 (change=6.376170543715437 %)
[2025-11-26 22:27:03] 2025-11-27 03:26:28,847 | INFO     | left removable region: 20
[2025-11-26 22:27:03] 2025-11-27 03:26:28,848 | INFO     | sum of square deviations: 330041912590.99133
[2025-11-26 22:27:03] 2025-11-27 03:26:28,866 | INFO     | sum of deviations: 2405024123591.9634
[2025-11-26 22:27:03] 2025-11-27 03:26:28,867 | INFO     | mean x: 1764182152.0029383
[2025-11-26 22:27:03] 2025-11-27 03:26:28,867 | INFO     | mean y: 2955588.3447600394
[2025-11-26 22:27:03] 2025-11-27 03:26:28,867 | INFO     | intersect: -12852686292.616945
[2025-11-26 22:27:03] 2025-11-27 03:26:28,868 | INFO     | chi2: 0.10041146664933649
[2025-11-26 22:27:03] 2025-11-27 03:26:28,868 | INFO     | current memory leak: 7.29 B/s (using 1021 data points, chi2=0.10)
[2025-11-26 22:27:03] 2025-11-27 03:26:28,870 | INFO     | could have reported an average CPU frequency of 3037 MHz (39 samples)
[2025-11-26 22:27:03] 2025-11-27 03:26:28,870 | INFO     | ..............................
[2025-11-26 22:27:03] 2025-11-27 03:26:28,870 | INFO     | . Timing measurements:
[2025-11-26 22:27:03] 2025-11-27 03:26:28,870 | INFO     | . get job = 0 s
[2025-11-26 22:27:03] 2025-11-27 03:26:28,870 | INFO     | . initial setup = 3 s
[2025-11-26 22:27:03] 2025-11-27 03:26:28,870 | INFO     | . payload setup = 33 s
[2025-11-26 22:27:03] 2025-11-27 03:26:28,870 | INFO     | . stage-in = 0 s
[2025-11-26 22:27:03] 2025-11-27 03:26:28,870 | INFO     | . payload execution = 64174 s
[2025-11-26 22:27:03] 2025-11-27 03:26:28,870 | INFO     | . stage-out = 5 s
[2025-11-26 22:27:03] 2025-11-27 03:26:28,870 | INFO     | . log creation = 0 s
[2025-11-26 22:27:03] 2025-11-27 03:26:28,870 | INFO     | ..............................
[2025-11-26 22:27:03] 2025-11-27 03:26:28,999 | INFO     | time since job start (64285s) is within the limit (172800.0s)
[2025-11-26 22:27:03] 2025-11-27 03:26:28,999 | INFO     | 
[2025-11-26 22:27:03] 2025-11-27 03:26:29,000 | INFO     | job summary report
[2025-11-26 22:27:03] 2025-11-27 03:26:29,000 | INFO     | --------------------------------------------------
[2025-11-26 22:27:03] 2025-11-27 03:26:29,000 | INFO     | PanDA job id: 6896765393
[2025-11-26 22:27:03] 2025-11-27 03:26:29,000 | INFO     | task id: 47556185
[2025-11-26 22:27:03] 2025-11-27 03:26:29,000 | INFO     | errors: (none)
[2025-11-26 22:27:03] 2025-11-27 03:26:29,000 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:27:03] 2025-11-27 03:26:29,000 | INFO     | pilot state: finished 
[2025-11-26 22:27:03] 2025-11-27 03:26:29,000 | INFO     | transexitcode: 0
[2025-11-26 22:27:03] 2025-11-27 03:26:29,000 | INFO     | exeerrorcode: 0
[2025-11-26 22:27:03] 2025-11-27 03:26:29,001 | INFO     | exeerrordiag: 
[2025-11-26 22:27:03] 2025-11-27 03:26:29,001 | INFO     | exitcode: 0
[2025-11-26 22:27:03] 2025-11-27 03:26:29,001 | INFO     | exitmsg: OK
[2025-11-26 22:27:03] 2025-11-27 03:26:29,001 | INFO     | cpuconsumptiontime: 247610 s
[2025-11-26 22:27:03] 2025-11-27 03:26:29,001 | INFO     | nevents: 1000
[2025-11-26 22:27:03] 2025-11-27 03:26:29,001 | INFO     | neventsw: 0
[2025-11-26 22:27:03] 2025-11-27 03:26:29,001 | INFO     | pid: 1188984
[2025-11-26 22:27:03] 2025-11-27 03:26:29,001 | INFO     | pgrp: 1188984
[2025-11-26 22:27:03] 2025-11-27 03:26:29,001 | INFO     | corecount: 8
[2025-11-26 22:27:03] 2025-11-27 03:26:29,001 | INFO     | event service: False
[2025-11-26 22:27:03] 2025-11-27 03:26:29,002 | INFO     | sizes: {0: 2284312, 1: 2284312, 12: 2284340, 22: 2284368, 25: 2284658, 33: 2284686, 64211: 2340484, 64212: 2340483, 64217: 2349533, 64221: 2349589, 64229: 2349835}
[2025-11-26 22:27:03] 2025-11-27 03:26:29,002 | INFO     | --------------------------------------------------
[2025-11-26 22:27:03] 2025-11-27 03:26:29,002 | INFO     | 
[2025-11-26 22:27:03] 2025-11-27 03:26:29,002 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 22:27:03] 2025-11-27 03:26:29,024 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,024 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,024 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,024 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:27:03] 2025-11-27 03:26:29,025 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,026 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:27:03] 2025-11-27 03:26:29,026 | INFO     | job 6896765393 has completed (purged errors)
[2025-11-26 22:27:03] 2025-11-27 03:26:29,026 | INFO     | overall cleanup function is called
[2025-11-26 22:27:03] 2025-11-27 03:26:30,043 | INFO     | --- collectZombieJob: --- 10, [1188984]
[2025-11-26 22:27:03] 2025-11-27 03:26:30,043 | INFO     | zombie collector waiting for pid 1188984
[2025-11-26 22:27:03] 2025-11-27 03:26:30,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:27:03] 2025-11-27 03:26:30,044 | INFO     | collected zombie processes
[2025-11-26 22:27:03] 2025-11-27 03:26:30,044 | INFO     | will attempt to kill all subprocesses of pid=1188984
[2025-11-26 22:27:03] 2025-11-27 03:26:30,867 | INFO     | process IDs to be killed: [1188984] (in reverse order)
[2025-11-26 22:27:03] 2025-11-27 03:26:31,151 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:27:03] 2025-11-27 03:26:31,152 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:27:03] 2025-11-27 03:26:31,170 | INFO     | did not find any defunct processes belonging to 1188984
[2025-11-26 22:27:03] 2025-11-27 03:26:31,186 | INFO     | did not find any defunct processes belonging to 1188984
[2025-11-26 22:27:03] 2025-11-27 03:26:31,192 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:27:03] 2025-11-27 03:26:31,192 | INFO     | ready for new job
[2025-11-26 22:27:03] 2025-11-27 03:26:31,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:27:03] 2025-11-27 03:26:31,231 | INFO     | ***************************************
[2025-11-26 22:27:03] 2025-11-27 03:26:31,231 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:27:03] 2025-11-27 03:26:31,231 | INFO     | ***************************************
[2025-11-26 22:27:03] 2025-11-27 03:26:31,231 | INFO     | 
[2025-11-26 22:27:03] 2025-11-27 03:26:31,244 | INFO     | architecture information:
[2025-11-26 22:27:03] 2025-11-27 03:26:31,259 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:27:03] 2025-11-27 03:26:31,340 | INFO     | cat /etc/os-release:
[2025-11-26 22:27:03] NAME="CentOS Linux"
[2025-11-26 22:27:03] VERSION="7 (Core)"
[2025-11-26 22:27:03] ID="centos"
[2025-11-26 22:27:03] ID_LIKE="rhel fedora"
[2025-11-26 22:27:03] VERSION_ID="7"
[2025-11-26 22:27:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:27:03] ANSI_COLOR="0;31"
[2025-11-26 22:27:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:27:03] HOME_URL="https://www.centos.org/"
[2025-11-26 22:27:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:27:03] 
[2025-11-26 22:27:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:27:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:27:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:27:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:27:03] 
[2025-11-26 22:27:03] 2025-11-27 03:26:31,341 | INFO     | ***************************************
[2025-11-26 22:27:03] 2025-11-27 03:26:31,844 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 22:27:03] 2025-11-27 03:26:31,872 | INFO     | sufficient remaining disk space (48491397120 B)
[2025-11-26 22:27:03] 2025-11-27 03:26:31,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:27:03] 2025-11-27 03:26:31,873 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:27:03] 2025-11-27 03:26:31,873 | INFO     | update_server=False
[2025-11-26 22:27:03] 2025-11-27 03:26:31,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:27:03] 2025-11-27 03:26:31,873 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:27:03] 2025-11-27 03:26:31,873 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:27:03] 2025-11-27 03:26:31,874 | INFO     | aborting loop
[2025-11-26 22:27:03] 2025-11-27 03:26:32,221 | INFO     | all payload control threads have been joined
[2025-11-26 22:27:03] 2025-11-27 03:26:32,879 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:32,880 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:32,942 | INFO     | all data control threads have been joined
[2025-11-26 22:27:03] 2025-11-27 03:26:32,967 | INFO     | all job control threads have been joined
[2025-11-26 22:27:03] 2025-11-27 03:26:33,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:27:03] 2025-11-27 03:26:33,227 | INFO     | [payload] control thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:33,396 | INFO     | [job] validate thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:33,537 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:33,683 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:33,684 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:33,685 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:33,699 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:33,948 | INFO     | [data] control thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:33,973 | INFO     | [job] control thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:33,999 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:34,019 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:27:03] 2025-11-27 03:26:34,361 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:35,025 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:35,087 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:35,885 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:27:03] 2025-11-27 03:26:55,259 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:27:03] 2025-11-27 03:26:55,632 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139992533993280)>', '<ExcThread(monitor, started 139992261170944)>']
[2025-11-26 22:27:03] 2025-11-27 03:27:00,663 | INFO     | all workflow threads have been joined
[2025-11-26 22:27:03] 2025-11-27 03:27:00,664 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:27:03] 2025-11-27 03:27:00,665 | INFO     | traces error code: 0
[2025-11-26 22:27:03] 2025-11-27 03:27:00,665 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:27:03] 2025-11-27 03:27:02,608 | INFO     | PID=1177129 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:27:03] 2025-11-27 03:27:02,609 | INFO     | .. there are 39 such processes running
[2025-11-26 22:27:03] 2025-11-27 03:27:02,609 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:27:03] 2025-11-27 03:27:02,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:27:03] 2025-11-27 03:27:02,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:27:03] 2025-11-27 03:27:02,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:27:03] 2025-11-27 03:27:02,609 | INFO     | [monitor] control thread has ended
[2025-11-26 22:27:03] 2025-11-27 03:27:02,965 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:27:03] 2025-11-27 03:27:02,976 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:27:03] 2025-11-27 03:27:02,980 [wrapper] pilotpid: 1177129
[2025-11-26 22:27:03] 2025-11-27 03:27:02,983 [wrapper] Pilot exit status: 0
[2025-11-26 22:27:03] 2025-11-27 03:27:02,996 [wrapper] pandaids: 6896765393
[2025-11-26 22:27:03] 2025-11-27 03:27:03,083 [wrapper] cleanup supervisor_pilot 1222263 1177130
[2025-11-26 22:27:03] 2025-11-27 03:27:03,086 [wrapper] Test setup, not cleaning
[2025-11-26 22:27:03] 2025-11-27 03:27:03,089 [wrapper] apfmon messages muted
[2025-11-26 22:27:03] 2025-11-27 03:27:03,091 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:27:03] 2025-11-27 03:27:03,094 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:27:03]  *** Error codes and diagnostics ***
[2025-11-26 22:27:03]     "exeErrorCode": 0,
[2025-11-26 22:27:03]     "exeErrorDiag": "",
[2025-11-26 22:27:03]     "pilotErrorCode": 0,
[2025-11-26 22:27:03]     "pilotErrorDiag": "",
[2025-11-26 22:27:03]  *** Listing of results directory ***
[2025-11-26 22:27:03] total 1329796
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 03:55 pilot3.tar.gz
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 04:06 queuedata.json
[2025-11-26 22:27:03] -rwx------. 1 boincer umatlas     36292 Nov 25 04:08 runpilot2-wrapper.sh
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas       100 Nov 26 04:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:27:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 04:34 run_atlas
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas       105 Nov 26 04:34 job.xml
[2025-11-26 22:27:03] -rw-r--r--. 2 boincer umatlas 412842152 Nov 26 04:34 EVNT.47483658._004262.pool.root.1
[2025-11-26 22:27:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 04:34 start_atlas.sh
[2025-11-26 22:27:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 04:34 shared
[2025-11-26 22:27:03] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 04:34 input.tar.gz
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas         0 Nov 26 04:34 boinc_lockfile
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 04:34 pandaJob.out
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas        57 Nov 26 04:34 setup.sh.local
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas    991827 Nov 26 04:35 agis_schedconf.cvmfs.json
[2025-11-26 22:27:03] drwx------. 5 boincer umatlas      4096 Nov 26 04:35 pilot3
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas       533 Nov 26 22:17 boinc_task_state.xml
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas      6843 Nov 26 22:20 init_data.xml
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas 923548245 Nov 26 22:25 HITS.47556185._000254.pool.root.1
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas      1063 Nov 26 22:26 memory_monitor_summary.json
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas        95 Nov 26 22:26 pilot_heartbeat.json
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:26 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas   2209690 Nov 26 22:26 log.47556185._000254.job.log.tgz.1
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas      8619 Nov 26 22:26 heartbeat.json
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:27 boinc_mmap_file
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas        29 Nov 26 22:27 wrapper_checkpoint.txt
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas       823 Nov 26 22:27 pilotlog.txt
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas   8490008 Nov 26 22:27 log.47556185._000254.job.log.1
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas       353 Nov 26 22:27 output.list
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:27 runtime_log
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas  10721280 Nov 26 22:27 result.tar.gz
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 22:27 runtime_log.err
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas       661 Nov 26 22:27 q8LODm9C4h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1OJKDmPrvdKn.diag
[2025-11-26 22:27:03] -rw-r--r--. 1 boincer umatlas     21382 Nov 26 22:27 stderr.txt
[2025-11-26 22:27:03] HITS file was successfully produced:
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas 923548245 Nov 26 22:25 shared/HITS.pool.root.1
[2025-11-26 22:27:03]  *** Contents of shared directory: ***
[2025-11-26 22:27:03] total 1316148
[2025-11-26 22:27:03] -rw-r--r--. 2 boincer umatlas 412842152 Nov 26 04:34 ATLAS.root_0
[2025-11-26 22:27:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 04:34 start_atlas.sh
[2025-11-26 22:27:03] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 04:34 input.tar.gz
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas 923548245 Nov 26 22:25 HITS.pool.root.1
[2025-11-26 22:27:03] -rw-------. 1 boincer umatlas  10721280 Nov 26 22:27 result.tar.gz
22:27:05 (1172741): run_atlas exited; CPU time 249372.119933
22:27:05 (1172741): called boinc_finish(0)

</stderr_txt>
]]>

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