Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:08:42 (6540): wrapper (7.7.26015): starting
01:08:42 (6540): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 01:08:42] Arguments: --nthreads 8
[2025-11-26 01:08:42] Threads: 8
[2025-11-26 01:08:42] Checking for CVMFS
[2025-11-26 01:08:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 01:08:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 01:08:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 01:08:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 01:08:42] 2.11.2.0 2466 117290 133720 153311 1 82 11666105 18432001 1885 130560 0 83227963 99.973 5064039 28274 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 01:08:42] CVMFS is ok
[2025-11-26 01:08:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 01:08:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 01:08:42] Further information can be found at the LHC@home message board.
[2025-11-26 01:08:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 01:08:42] Checking for apptainer binary...
[2025-11-26 01:08:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 01:08:42] Running /usr/bin/apptainer --version
[2025-11-26 01:08:42] apptainer version 1.3.2-1.el7
[2025-11-26 01:08:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 01:08:43] c-206-20.aglt2.org
[2025-11-26 01:08:43] apptainer works
[2025-11-26 01:08:43] Set ATHENA_PROC_NUMBER=8
[2025-11-26 01:08:43] Set ATHENA_CORE_NUMBER=8
[2025-11-26 01:08:43] Starting ATLAS job with PandaID=6896764770
[2025-11-26 01:08:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:23:54]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:23:54] 2025-11-27 01:23:21,703 | INFO     | monitor loop #4961: job 0:6896764770 is in state 'finished'
[2025-11-26 20:23:54] 2025-11-27 01:23:21,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:23:54] 2025-11-27 01:23:22,359 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 20:23:54] 2025-11-27 01:23:22,365 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2394.6666666666665
[2025-11-26 20:23:54] 2025-11-27 01:23:22,370 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896764770/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:23:54] 2025-11-27 01:23:22,371 | INFO     | extracted standard info from prmon json
[2025-11-26 20:23:54] 2025-11-27 01:23:22,371 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:23:54] 2025-11-27 01:23:22,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:23:54] 2025-11-27 01:23:22,402 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:23:54] 2025-11-27 01:23:22,404 | INFO     | sum of square deviations: 453383504943.1859
[2025-11-26 20:23:54] 2025-11-27 01:23:22,436 | INFO     | sum of deviations: 2028201085064.344
[2025-11-26 20:23:54] 2025-11-27 01:23:22,436 | INFO     | mean x: 1764171947.5964758
[2025-11-26 20:23:54] 2025-11-27 01:23:22,436 | INFO     | mean y: 2867581.786784141
[2025-11-26 20:23:54] 2025-11-27 01:23:22,436 | INFO     | intersect: -7889116619.984353
[2025-11-26 20:23:54] 2025-11-27 01:23:22,437 | INFO     | chi2: 6.462947533297899
[2025-11-26 20:23:54] 2025-11-27 01:23:22,438 | INFO     | sum of square deviations: 447418213528.899
[2025-11-26 20:23:54] 2025-11-27 01:23:22,463 | INFO     | sum of deviations: 2379431184125.457
[2025-11-26 20:23:54] 2025-11-27 01:23:22,463 | INFO     | mean x: 1764171795.0991151
[2025-11-26 20:23:54] 2025-11-27 01:23:22,464 | INFO     | mean y: 2876559.156637168
[2025-11-26 20:23:54] 2025-11-27 01:23:22,464 | INFO     | intersect: -9379230061.637617
[2025-11-26 20:23:54] 2025-11-27 01:23:22,465 | INFO     | chi2: 3.634893250861894
[2025-11-26 20:23:54] 2025-11-27 01:23:22,466 | INFO     | current chi2=3.634893250861894 (change=43.757964425140734 %)
[2025-11-26 20:23:54] 2025-11-27 01:23:22,467 | INFO     | sum of square deviations: 441505481239.59656
[2025-11-26 20:23:54] 2025-11-27 01:23:22,512 | INFO     | sum of deviations: 2550676994872.8633
[2025-11-26 20:23:54] 2025-11-27 01:23:22,512 | INFO     | mean x: 1764171642.6017778
[2025-11-26 20:23:54] 2025-11-27 01:23:22,512 | INFO     | mean y: 2880975.2675555553
[2025-11-26 20:23:54] 2025-11-27 01:23:22,513 | INFO     | intersect: -10189137504.678457
[2025-11-26 20:23:54] 2025-11-27 01:23:22,514 | INFO     | chi2: 2.878792614915194
[2025-11-26 20:23:54] 2025-11-27 01:23:22,514 | INFO     | current chi2=2.878792614915194 (change=20.801178570166144 %)
[2025-11-26 20:23:54] 2025-11-27 01:23:22,515 | INFO     | right removable region: 1124
[2025-11-26 20:23:54] 2025-11-27 01:23:22,516 | INFO     | sum of square deviations: 447417800558.89954
[2025-11-26 20:23:54] 2025-11-27 01:23:22,546 | INFO     | sum of deviations: 1736591681127.3848
[2025-11-26 20:23:54] 2025-11-27 01:23:22,546 | INFO     | mean x: 1764172100.0991151
[2025-11-26 20:23:54] 2025-11-27 01:23:22,547 | INFO     | mean y: 2875027.6840707962
[2025-11-26 20:23:54] 2025-11-27 01:23:22,547 | INFO     | intersect: -6844520380.5499
[2025-11-26 20:23:54] 2025-11-27 01:23:22,548 | INFO     | chi2: 4.4627359827982644
[2025-11-26 20:23:54] 2025-11-27 01:23:22,548 | INFO     | current chi2=4.4627359827982644 (change=30.948905900818456 %)
[2025-11-26 20:23:54] 2025-11-27 01:23:22,549 | INFO     | sum of square deviations: 441504862212.1984
[2025-11-26 20:23:54] 2025-11-27 01:23:22,584 | INFO     | sum of deviations: 1641835832480.0967
[2025-11-26 20:23:54] 2025-11-27 01:23:22,584 | INFO     | mean x: 1764172252.599111
[2025-11-26 20:23:54] 2025-11-27 01:23:22,585 | INFO     | mean y: 2877471.694222222
[2025-11-26 20:23:54] 2025-11-27 01:23:22,585 | INFO     | intersect: -6557596640.575523
[2025-11-26 20:23:54] 2025-11-27 01:23:22,586 | INFO     | chi2: 4.355070279195506
[2025-11-26 20:23:54] 2025-11-27 01:23:22,586 | INFO     | current chi2=4.355070279195506 (change=2.4125492526951744 %)
[2025-11-26 20:23:54] 2025-11-27 01:23:22,586 | INFO     | left removable region: 20
[2025-11-26 20:23:54] 2025-11-27 01:23:22,587 | INFO     | sum of square deviations: 417239734243.02075
[2025-11-26 20:23:54] 2025-11-27 01:23:22,608 | INFO     | sum of deviations: 2048989891500.9595
[2025-11-26 20:23:54] 2025-11-27 01:23:22,609 | INFO     | mean x: 1764172222.1041667
[2025-11-26 20:23:54] 2025-11-27 01:23:22,609 | INFO     | mean y: 2895867.5307971016
[2025-11-26 20:23:54] 2025-11-27 01:23:22,609 | INFO     | intersect: -8660639153.927164
[2025-11-26 20:23:54] 2025-11-27 01:23:22,610 | INFO     | chi2: 0.52477616958399
[2025-11-26 20:23:54] 2025-11-27 01:23:22,610 | INFO     | current memory leak: 4.91 B/s (using 1104 data points, chi2=0.52)
[2025-11-26 20:23:54] 2025-11-27 01:23:22,611 | INFO     | could have reported an average CPU frequency of 2626 MHz (41 samples)
[2025-11-26 20:23:54] 2025-11-27 01:23:22,611 | INFO     | ..............................
[2025-11-26 20:23:54] 2025-11-27 01:23:22,611 | INFO     | . Timing measurements:
[2025-11-26 20:23:54] 2025-11-27 01:23:22,611 | INFO     | . get job = 0 s
[2025-11-26 20:23:54] 2025-11-27 01:23:22,611 | INFO     | . initial setup = 2 s
[2025-11-26 20:23:54] 2025-11-27 01:23:22,611 | INFO     | . payload setup = 5 s
[2025-11-26 20:23:54] 2025-11-27 01:23:22,611 | INFO     | . stage-in = 0 s
[2025-11-26 20:23:54] 2025-11-27 01:23:22,612 | INFO     | . payload execution = 69235 s
[2025-11-26 20:23:54] 2025-11-27 01:23:22,612 | INFO     | . stage-out = 3 s
[2025-11-26 20:23:54] 2025-11-27 01:23:22,612 | INFO     | . log creation = 0 s
[2025-11-26 20:23:54] 2025-11-27 01:23:22,612 | INFO     | ..............................
[2025-11-26 20:23:54] 2025-11-27 01:23:22,743 | INFO     | 
[2025-11-26 20:23:54] 2025-11-27 01:23:22,743 | INFO     | job summary report
[2025-11-26 20:23:54] 2025-11-27 01:23:22,744 | INFO     | --------------------------------------------------
[2025-11-26 20:23:54] 2025-11-27 01:23:22,744 | INFO     | PanDA job id: 6896764770
[2025-11-26 20:23:54] 2025-11-27 01:23:22,744 | INFO     | task id: 47556185
[2025-11-26 20:23:54] 2025-11-27 01:23:22,744 | INFO     | errors: (none)
[2025-11-26 20:23:54] 2025-11-27 01:23:22,744 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:23:54] 2025-11-27 01:23:22,744 | INFO     | pilot state: finished 
[2025-11-26 20:23:54] 2025-11-27 01:23:22,745 | INFO     | transexitcode: 0
[2025-11-26 20:23:54] 2025-11-27 01:23:22,745 | INFO     | exeerrorcode: 0
[2025-11-26 20:23:54] 2025-11-27 01:23:22,745 | INFO     | exeerrordiag: 
[2025-11-26 20:23:54] 2025-11-27 01:23:22,745 | INFO     | exitcode: 0
[2025-11-26 20:23:54] 2025-11-27 01:23:22,745 | INFO     | exitmsg: OK
[2025-11-26 20:23:54] 2025-11-27 01:23:22,745 | INFO     | cpuconsumptiontime: 538507 s
[2025-11-26 20:23:54] 2025-11-27 01:23:22,746 | INFO     | nevents: 1000
[2025-11-26 20:23:54] 2025-11-27 01:23:22,746 | INFO     | neventsw: 0
[2025-11-26 20:23:54] 2025-11-27 01:23:22,746 | INFO     | pid: 17321
[2025-11-26 20:23:54] 2025-11-27 01:23:22,746 | INFO     | pgrp: 17321
[2025-11-26 20:23:54] 2025-11-27 01:23:22,746 | INFO     | corecount: 8
[2025-11-26 20:23:54] 2025-11-27 01:23:22,746 | INFO     | event service: False
[2025-11-26 20:23:54] 2025-11-27 01:23:22,747 | INFO     | sizes: {0: 2284312, 1: 2284312, 4: 2284602, 12: 2284630, 69244: 2340887, 69248: 2349881, 69249: 2350065, 69253: 2350407}
[2025-11-26 20:23:54] 2025-11-27 01:23:22,747 | INFO     | --------------------------------------------------
[2025-11-26 20:23:54] 2025-11-27 01:23:22,747 | INFO     | 
[2025-11-26 20:23:54] 2025-11-27 01:23:22,747 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 20:23:54] 2025-11-27 01:23:22,768 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,768 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,768 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,769 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,769 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,769 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,769 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,769 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,770 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,770 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,770 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,770 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,770 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,770 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,771 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,771 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,771 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,771 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:23:54] 2025-11-27 01:23:22,771 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,771 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:23:54] 2025-11-27 01:23:22,772 | INFO     | job 6896764770 has completed (purged errors)
[2025-11-26 20:23:54] 2025-11-27 01:23:22,772 | INFO     | overall cleanup function is called
[2025-11-26 20:23:54] 2025-11-27 01:23:23,788 | INFO     | --- collectZombieJob: --- 10, [17321]
[2025-11-26 20:23:54] 2025-11-27 01:23:23,788 | INFO     | zombie collector waiting for pid 17321
[2025-11-26 20:23:54] 2025-11-27 01:23:23,788 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:23:54] 2025-11-27 01:23:23,788 | INFO     | collected zombie processes
[2025-11-26 20:23:54] 2025-11-27 01:23:23,788 | INFO     | will attempt to kill all subprocesses of pid=17321
[2025-11-26 20:23:54] 2025-11-27 01:23:23,910 | INFO     | process IDs to be killed: [17321] (in reverse order)
[2025-11-26 20:23:54] 2025-11-27 01:23:23,969 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:23:54] 2025-11-27 01:23:23,970 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:23:54] 2025-11-27 01:23:23,975 | INFO     | did not find any defunct processes belonging to 17321
[2025-11-26 20:23:54] 2025-11-27 01:23:23,980 | INFO     | did not find any defunct processes belonging to 17321
[2025-11-26 20:23:54] 2025-11-27 01:23:23,982 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:23:54] 2025-11-27 01:23:23,982 | INFO     | ready for new job
[2025-11-26 20:23:54] 2025-11-27 01:23:23,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:23:54] 2025-11-27 01:23:23,987 | INFO     | ***************************************
[2025-11-26 20:23:54] 2025-11-27 01:23:23,988 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:23:54] 2025-11-27 01:23:23,988 | INFO     | ***************************************
[2025-11-26 20:23:54] 2025-11-27 01:23:23,988 | INFO     | 
[2025-11-26 20:23:54] 2025-11-27 01:23:23,989 | INFO     | architecture information:
[2025-11-26 20:23:54] 2025-11-27 01:23:23,990 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:23:54] 2025-11-27 01:23:24,007 | INFO     | cat /etc/os-release:
[2025-11-26 20:23:54] NAME="CentOS Linux"
[2025-11-26 20:23:54] VERSION="7 (Core)"
[2025-11-26 20:23:54] ID="centos"
[2025-11-26 20:23:54] ID_LIKE="rhel fedora"
[2025-11-26 20:23:54] VERSION_ID="7"
[2025-11-26 20:23:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:23:54] ANSI_COLOR="0;31"
[2025-11-26 20:23:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:23:54] HOME_URL="https://www.centos.org/"
[2025-11-26 20:23:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:23:54] 
[2025-11-26 20:23:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:23:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:23:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:23:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:23:54] 
[2025-11-26 20:23:54] 2025-11-27 01:23:24,007 | INFO     | ***************************************
[2025-11-26 20:23:54] 2025-11-27 01:23:24,510 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 20:23:54] 2025-11-27 01:23:24,524 | INFO     | sufficient remaining disk space (25522339840 B)
[2025-11-26 20:23:54] 2025-11-27 01:23:24,525 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:23:54] 2025-11-27 01:23:24,525 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:23:54] 2025-11-27 01:23:24,525 | INFO     | update_server=False
[2025-11-26 20:23:54] 2025-11-27 01:23:24,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:23:54] 2025-11-27 01:23:24,526 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:23:54] 2025-11-27 01:23:24,526 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:23:54] 2025-11-27 01:23:24,646 | INFO     | all data control threads have been joined
[2025-11-26 20:23:54] 2025-11-27 01:23:24,863 | INFO     | all payload control threads have been joined
[2025-11-26 20:23:54] 2025-11-27 01:23:25,030 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:23:54] 2025-11-27 01:23:25,089 | INFO     | all job control threads have been joined
[2025-11-26 20:23:54] 2025-11-27 01:23:25,217 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:23:54] 2025-11-27 01:23:25,217 | INFO     | aborting loop
[2025-11-26 20:23:54] 2025-11-27 01:23:25,531 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:25,532 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:25,647 | INFO     | [data] control thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:25,868 | INFO     | [payload] control thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:26,097 | INFO     | [job] control thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:26,217 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:26,222 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:26,261 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:26,322 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:26,323 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:26,412 | INFO     | [job] validate thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:26,532 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:26,613 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:26,940 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:27,003 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:29,035 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:23:54] 2025-11-27 01:23:48,423 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:23:54] 2025-11-27 01:23:48,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239273965376)>', '<ExcThread(monitor, started 140238382946048)>']
[2025-11-26 20:23:54] 2025-11-27 01:23:53,909 | INFO     | all workflow threads have been joined
[2025-11-26 20:23:54] 2025-11-27 01:23:53,909 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:23:54] 2025-11-27 01:23:53,909 | INFO     | traces error code: 0
[2025-11-26 20:23:54] 2025-11-27 01:23:53,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:23:54] 2025-11-27 01:23:54,131 | INFO     | PID=10218 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 20:23:54] 2025-11-27 01:23:54,131 | INFO     | .. there are 3 such processes running
[2025-11-26 20:23:54] 2025-11-27 01:23:54,132 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:23:54] 2025-11-27 01:23:54,132 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:23:54] 2025-11-27 01:23:54,132 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:23:54] 2025-11-27 01:23:54,132 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:23:54] 2025-11-27 01:23:54,133 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 20:23:54] 2025-11-27 01:23:54,133 | INFO     | [monitor] control thread has ended
[2025-11-26 20:23:54] 2025-11-27 01:23:54,257 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:23:54] 2025-11-27 01:23:54,260 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:23:54] 2025-11-27 01:23:54,262 [wrapper] pilotpid: 10218
[2025-11-26 20:23:54] 2025-11-27 01:23:54,264 [wrapper] Pilot exit status: 0
[2025-11-26 20:23:54] 2025-11-27 01:23:54,273 [wrapper] pandaids: 6896764770
[2025-11-26 20:23:54] 2025-11-27 01:23:54,301 [wrapper] cleanup supervisor_pilot 32673 10219
[2025-11-26 20:23:54] 2025-11-27 01:23:54,304 [wrapper] Test setup, not cleaning
[2025-11-26 20:23:54] 2025-11-27 01:23:54,306 [wrapper] apfmon messages muted
[2025-11-26 20:23:54] 2025-11-27 01:23:54,308 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:23:54] 2025-11-27 01:23:54,310 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:23:54]  *** Error codes and diagnostics ***
[2025-11-26 20:23:54]     "exeErrorCode": 0,
[2025-11-26 20:23:54]     "exeErrorDiag": "",
[2025-11-26 20:23:54]     "pilotErrorCode": 0,
[2025-11-26 20:23:54]     "pilotErrorDiag": "",
[2025-11-26 20:23:54]  *** Listing of results directory ***
[2025-11-26 20:23:54] total 1331096
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 03:55 pilot3.tar.gz
[2025-11-26 20:23:54] -rwx------ 1 boincer umatlas     36292 Nov 25 03:56 runpilot2-wrapper.sh
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 03:56 queuedata.json
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas       100 Nov 26 01:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:23:54] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 01:08 run_atlas
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas       105 Nov 26 01:08 job.xml
[2025-11-26 20:23:54] -rw-r--r-- 2 boincer umatlas 409379774 Nov 26 01:08 EVNT.47483658._004258.pool.root.1
[2025-11-26 20:23:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 01:08 start_atlas.sh
[2025-11-26 20:23:54] drwxrwx--x 2 boincer umatlas      4096 Nov 26 01:08 shared
[2025-11-26 20:23:54] -rw-r--r-- 2 boincer umatlas    590100 Nov 26 01:08 input.tar.gz
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas         0 Nov 26 01:08 boinc_lockfile
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas      2784 Nov 26 01:08 pandaJob.out
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas        57 Nov 26 01:08 setup.sh.local
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas    991877 Nov 26 01:08 agis_schedconf.cvmfs.json
[2025-11-26 20:23:54] drwx------ 5 boincer umatlas      4096 Nov 26 01:08 pilot3
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas       533 Nov 26 20:08 boinc_task_state.xml
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas      5954 Nov 26 20:18 init_data.xml
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas 925878917 Nov 26 20:22 HITS.47556185._000220.pool.root.1
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas      1079 Nov 26 20:23 memory_monitor_summary.json
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas   1516240 Nov 26 20:23 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas   2311773 Nov 26 20:23 log.47556185._000220.job.log.tgz.1
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas      8662 Nov 26 20:23 heartbeat.json
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas        29 Nov 26 20:23 wrapper_checkpoint.txt
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 20:23 boinc_mmap_file
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas        95 Nov 26 20:23 pilot_heartbeat.json
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas       890 Nov 26 20:23 pilotlog.txt
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas   9622644 Nov 26 20:23 log.47556185._000220.job.log.1
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas       353 Nov 26 20:23 output.list
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas       620 Nov 26 20:23 runtime_log
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas  11950080 Nov 26 20:23 result.tar.gz
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 20:23 runtime_log.err
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas       668 Nov 26 20:23 892KDmE23h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNHMKDmQ4W7Hm.diag
[2025-11-26 20:23:54] -rw-r--r-- 1 boincer umatlas     21275 Nov 26 20:23 stderr.txt
[2025-11-26 20:23:54] HITS file was successfully produced:
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas 925878917 Nov 26 20:22 shared/HITS.pool.root.1
[2025-11-26 20:23:54]  *** Contents of shared directory: ***
[2025-11-26 20:23:54] total 1316240
[2025-11-26 20:23:54] -rw-r--r-- 2 boincer umatlas 409379774 Nov 26 01:08 ATLAS.root_0
[2025-11-26 20:23:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 01:08 start_atlas.sh
[2025-11-26 20:23:54] -rw-r--r-- 2 boincer umatlas    590100 Nov 26 01:08 input.tar.gz
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas 925878917 Nov 26 20:22 HITS.pool.root.1
[2025-11-26 20:23:54] -rw------- 1 boincer umatlas  11950080 Nov 26 20:23 result.tar.gz
20:23:56 (6540): run_atlas exited; CPU time 537985.146124
20:23:56 (6540): called boinc_finish(0)

</stderr_txt>
]]>

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