Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:53:08 (133296): wrapper (7.7.26015): starting
21:53:08 (133296): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 21:53:08] Arguments: --nthreads 12
[2025-11-25 21:53:08] Threads: 12
[2025-11-25 21:53:08] Checking for CVMFS
[2025-11-25 21:53:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:53:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:53:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:53:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:53:08] 2.11.5.0 3259785 27675 214792 153311 0 383 36243167 45568000 18822 130560 0 279037185 99.796 163929328 13937 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 21:53:08] CVMFS is ok
[2025-11-25 21:53:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:53:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:53:08] Further information can be found at the LHC@home message board.
[2025-11-25 21:53:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:53:08] Checking for apptainer binary...
[2025-11-25 21:53:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:53:08] Running /usr/bin/apptainer --version
[2025-11-25 21:53:08] apptainer version 1.4.1-1.el9
[2025-11-25 21:53:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:53:08] wns0092.triumf.lcg
[2025-11-25 21:53:08] apptainer works
[2025-11-25 21:53:08] Set ATHENA_PROC_NUMBER=12
[2025-11-25 21:53:08] Set ATHENA_CORE_NUMBER=12
[2025-11-25 21:53:08] Starting ATLAS job with PandaID=6891591086
[2025-11-25 21:53:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:57:22]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:57:22] 2025-11-26 05:56:26,637 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 21:57:22] 2025-11-26 05:56:26,637 | WARNING  | wrong length of table data, x=[1764136419.0], y=[22005.0] (must be same and length>=4)
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | could have reported an average CPU frequency of 2788 MHz (4 samples)
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | ..............................
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . Timing measurements:
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . get job = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . initial setup = 2 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . payload setup = 4 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . stage-in = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . payload execution = 45 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . stage-out = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . log creation = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | ..............................
[2025-11-25 21:57:22] 2025-11-26 05:56:26,639 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 21:57:22] 2025-11-26 05:56:26,639 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891591086/pilotlog.txt
[2025-11-25 21:57:22] 2025-11-26 05:56:26,648 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 21:57:22] - Log from pilotlog.txt -
[2025-11-25 21:57:22] 2025-11-26 05:56:26,636 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891591086/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:57:22] 2025-11-26 05:56:26,636 | INFO     | extracted standard info from prmon json
[2025-11-25 21:57:22] 2025-11-26 05:56:26,636 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:57:22] 2025-11-26 05:56:26,636 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:57:22] 2025-11-26 05:56:26,637 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 21:57:22] 2025-11-26 05:56:26,637 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 21:57:22] 2025-11-26 05:56:26,637 | WARNING  | wrong length of table data, x=[1764136419.0], y=[22005.0] (must be same and length>=4)
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | could have reported an average CPU frequency of 2788 MHz (4 samples)
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | ..............................
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . Timing measurements:
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . get job = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . initial setup = 2 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . payload setup = 4 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . stage-in = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . payload execution = 45 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . stage-out = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . log creation = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | ..............................
[2025-11-25 21:57:22] 2025-11-26 05:56:26,639 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 21:57:22] 2025-11-26 05:56:26,639 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891591086/pilotlog.txt
[2025-11-25 21:57:22] 2025-11-26 05:56:26,648 | WARNING  | 
[2025-11-25 21:57:22] [begin log extracts]
[2025-11-25 21:57:22] - Log from pilotlog.txt -
[2025-11-25 21:57:22] 2025-11-26 05:56:26,636 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891591086/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:57:22] 2025-11-26 05:56:26,636 | INFO     | extracted standard info from prmon json
[2025-11-25 21:57:22] 2025-11-26 05:56:26,636 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:57:22] 2025-11-26 05:56:26,636 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:57:22] 2025-11-26 05:56:26,637 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 21:57:22] 2025-11-26 05:56:26,637 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 21:57:22] 2025-11-26 05:56:26,637 | WARNING  | wrong length of table data, x=[1764136419.0], y=[22005.0] (must be same and length>=4)
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | could have reported an average CPU frequency of 2788 MHz (4 samples)
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | ..............................
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . Timing measurements:
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . get job = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . initial setup = 2 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . payload setup = 4 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . stage-in = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . payload execution = 45 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . stage-out = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | . log creation = 0 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,638 | INFO     | ..............................
[2025-11-25 21:57:22] 2025-11-26 05:56:26,639 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 21:57:22] 2025-11-26 05:56:26,639 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891591086/pilotlog.txt
[2025-11-25 21:57:22] [end log extracts]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,648 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 21:57:22] 2025-11-26 05:56:26,649 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 21:57:22] 2025-11-26 05:56:26,703 | INFO     | 
[2025-11-25 21:57:22] 2025-11-26 05:56:26,703 | INFO     | job summary report
[2025-11-25 21:57:22] 2025-11-26 05:56:26,703 | INFO     | --------------------------------------------------
[2025-11-25 21:57:22] 2025-11-26 05:56:26,703 | INFO     | PanDA job id: 6891591086
[2025-11-25 21:57:22] 2025-11-26 05:56:26,703 | INFO     | task id: 47493068
[2025-11-25 21:57:22] 2025-11-26 05:56:26,703 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 21:54:17,794 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 21:57:22] 2025-11-26 05:56:26,703 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 21:57:22] 2025-11-26 05:56:26,703 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | pilot state: failed 
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | transexitcode: 65
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | exeerrorcode: 65
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | exitcode: 65
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | cpuconsumptiontime: 39 s
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | nevents: 0
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | neventsw: 0
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | pid: 143519
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | pgrp: 143519
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | corecount: 12
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | event service: False
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | sizes: {0: 2284295, 3: 2284557, 11: 2284585, 50: 2310051, 52: 2314341, 55: 2314369, 176: 2314723}
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | --------------------------------------------------
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | 
[2025-11-25 21:57:22] 2025-11-26 05:56:26,704 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 21:57:22] 2025-11-26 05:56:26,718 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,718 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,718 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,718 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,718 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,718 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,718 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | job 6891591086 has completed (purged errors)
[2025-11-25 21:57:22] 2025-11-26 05:56:26,719 | INFO     | overall cleanup function is called
[2025-11-25 21:57:22] 2025-11-26 05:56:27,725 | INFO     | --- collectZombieJob: --- 10, [143519]
[2025-11-25 21:57:22] 2025-11-26 05:56:27,725 | INFO     | zombie collector waiting for pid 143519
[2025-11-25 21:57:22] 2025-11-26 05:56:27,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:57:22] 2025-11-26 05:56:27,725 | INFO     | collected zombie processes
[2025-11-25 21:57:22] 2025-11-26 05:56:27,725 | INFO     | will attempt to kill all subprocesses of pid=143519
[2025-11-25 21:57:22] 2025-11-26 05:56:27,876 | INFO     | process IDs to be killed: [143519] (in reverse order)
[2025-11-25 21:57:22] 2025-11-26 05:56:27,934 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:57:22] 2025-11-26 05:56:27,934 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:57:22] 2025-11-26 05:56:27,941 | INFO     | did not find any defunct processes belonging to 143519
[2025-11-25 21:57:22] 2025-11-26 05:56:27,946 | INFO     | did not find any defunct processes belonging to 143519
[2025-11-25 21:57:22] 2025-11-26 05:56:27,947 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:57:22] 2025-11-26 05:56:27,947 | INFO     | ready for new job
[2025-11-25 21:57:22] 2025-11-26 05:56:27,947 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:57:22] 2025-11-26 05:56:27,950 | INFO     | ***************************************
[2025-11-25 21:57:22] 2025-11-26 05:56:27,950 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:57:22] 2025-11-26 05:56:27,950 | INFO     | ***************************************
[2025-11-25 21:57:22] 2025-11-26 05:56:27,950 | INFO     | 
[2025-11-25 21:57:22] 2025-11-26 05:56:27,952 | INFO     | architecture information:
[2025-11-25 21:57:22] 2025-11-26 05:56:27,956 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:57:22] 2025-11-26 05:56:27,965 | INFO     | cat /etc/os-release:
[2025-11-25 21:57:22] NAME="CentOS Linux"
[2025-11-25 21:57:22] VERSION="7 (Core)"
[2025-11-25 21:57:22] ID="centos"
[2025-11-25 21:57:22] ID_LIKE="rhel fedora"
[2025-11-25 21:57:22] VERSION_ID="7"
[2025-11-25 21:57:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:57:22] ANSI_COLOR="0;31"
[2025-11-25 21:57:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:57:22] HOME_URL="https://www.centos.org/"
[2025-11-25 21:57:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:57:22] 
[2025-11-25 21:57:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:57:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:57:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:57:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:57:22] 
[2025-11-25 21:57:22] 2025-11-26 05:56:27,966 | INFO     | ***************************************
[2025-11-25 21:57:22] 2025-11-26 05:56:28,468 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 21:57:22] 2025-11-26 05:56:28,478 | INFO     | sufficient remaining disk space (2009202688000 B)
[2025-11-25 21:57:22] 2025-11-26 05:56:28,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:57:22] 2025-11-26 05:56:28,479 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:57:22] 2025-11-26 05:56:28,479 | INFO     | update_server=False
[2025-11-25 21:57:22] 2025-11-26 05:56:28,479 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:57:22] 2025-11-26 05:56:28,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:57:22] 2025-11-26 05:56:28,759 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:57:22] 2025-11-26 05:56:28,760 | INFO     | aborting loop
[2025-11-25 21:57:22] 2025-11-26 05:56:28,771 | INFO     | all data control threads have been joined
[2025-11-25 21:57:22] 2025-11-26 05:56:28,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:57:22] 2025-11-26 05:56:29,441 | INFO     | all payload control threads have been joined
[2025-11-25 21:57:22] 2025-11-26 05:56:29,484 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:29,484 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:29,499 | INFO     | all job control threads have been joined
[2025-11-25 21:57:22] 2025-11-26 05:56:29,540 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:57:22] 2025-11-26 05:56:29,751 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:29,761 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:29,779 | INFO     | [data] control thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:30,218 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:30,378 | INFO     | [job] validate thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:30,446 | INFO     | [payload] control thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:30,504 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:30,504 | INFO     | [job] control thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:30,599 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:30,764 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:30,817 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:30,850 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:30,890 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:33,546 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:57:22] 2025-11-26 05:56:58,883 | INFO     | PID=136971 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 21:57:22] 2025-11-26 05:56:58,883 | INFO     | .. there are 21 such processes running
[2025-11-25 21:57:22] 2025-11-26 05:56:58,883 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:57:22] 2025-11-26 05:56:58,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:57:22] 2025-11-26 05:56:58,884 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:57:22] 2025-11-26 05:57:16,720 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:57:22] 2025-11-26 05:57:17,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140147510519616)>', '<ExcThread(monitor, started 140146972280576)>']
[2025-11-25 21:57:22] 2025-11-26 05:57:17,997 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:57:22] 2025-11-26 05:57:17,998 | INFO     | [monitor] control thread has ended
[2025-11-25 21:57:22] 2025-11-26 05:57:22,653 | INFO     | all workflow threads have been joined
[2025-11-25 21:57:22] 2025-11-26 05:57:22,653 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:57:22] 2025-11-26 05:57:22,653 | INFO     | traces error code: 0
[2025-11-25 21:57:22] 2025-11-26 05:57:22,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:57:22] 2025-11-26 05:57:22,777 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:57:22] 2025-11-26 05:57:22,779 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:57:22] 2025-11-26 05:57:22,781 [wrapper] pilotpid: 136971
[2025-11-25 21:57:22] 2025-11-26 05:57:22,783 [wrapper] Pilot exit status: 0
[2025-11-25 21:57:22] 2025-11-26 05:57:22,789 [wrapper] pandaids: 6891591086
[2025-11-25 21:57:22] 2025-11-26 05:57:22,827 [wrapper] cleanup supervisor_pilot  136977 136972
[2025-11-25 21:57:22] 2025-11-26 05:57:22,829 [wrapper] Test setup, not cleaning
[2025-11-25 21:57:22] 2025-11-26 05:57:22,831 [wrapper] apfmon messages muted
[2025-11-25 21:57:22] 2025-11-26 05:57:22,833 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:57:22] 2025-11-26 05:57:22,834 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:57:22]  *** Error codes and diagnostics ***
[2025-11-25 21:57:22]     "exeErrorCode": 65,
[2025-11-25 21:57:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 21:57:22]     "pilotErrorCode": 1305,
[2025-11-25 21:57:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 21:57:22]  *** Listing of results directory ***
[2025-11-25 21:57:22] total 405276
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc    576529 Nov 18 09:59 pilot3.tar.gz
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc      5112 Nov 18 10:03 queuedata.json
[2025-11-25 21:57:22] -rwx------. 1 boinc boinc     36292 Nov 18 10:04 runpilot2-wrapper.sh
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc       100 Nov 25 21:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:57:22] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 21:53 run_atlas
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc       105 Nov 25 21:53 job.xml
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc      6595 Nov 25 21:53 init_data.xml
[2025-11-25 21:57:22] -rw-r--r--. 2 boinc boinc 410807282 Nov 25 21:53 EVNT.47493065._000611.pool.root.1
[2025-11-25 21:57:22] -rw-r--r--. 2 boinc boinc     15120 Nov 25 21:53 start_atlas.sh
[2025-11-25 21:57:22] drwxrwx--x. 2 boinc boinc      4096 Nov 25 21:53 shared
[2025-11-25 21:57:22] -rw-r--r--. 2 boinc boinc    590089 Nov 25 21:53 input.tar.gz
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc         0 Nov 25 21:53 boinc_lockfile
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc      2770 Nov 25 21:53 pandaJob.out
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc    991877 Nov 25 21:53 agis_schedconf.cvmfs.json
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc   1516240 Nov 25 21:53 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:57:22] drwx------. 5 boinc boinc      4096 Nov 25 21:53 pilot3
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc       523 Nov 25 21:54 boinc_task_state.xml
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc       974 Nov 25 21:54 memory_monitor_summary.json
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc     46387 Nov 25 21:54 log.47493068._005601.job.log.tgz.1
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc        95 Nov 25 21:56 pilot_heartbeat.json
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc     10324 Nov 25 21:56 heartbeat.json
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc        23 Nov 25 21:57 wrapper_checkpoint.txt
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc      8192 Nov 25 21:57 boinc_mmap_file
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc      4822 Nov 25 21:57 pilotlog.txt
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc     92257 Nov 25 21:57 log.47493068._005601.job.log.1
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc       186 Nov 25 21:57 output.list
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc       620 Nov 25 21:57 runtime_log
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc    163840 Nov 25 21:57 result.tar.gz
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc      8528 Nov 25 21:57 runtime_log.err
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc       645 Nov 25 21:57 fEOKDmPFff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhAGKDmhACY4m.diag
[2025-11-25 21:57:22] -rw-r--r--. 1 boinc boinc     22386 Nov 25 21:57 stderr.txt
[2025-11-25 21:57:22] No HITS result produced
[2025-11-25 21:57:22]  *** Contents of shared directory: ***
[2025-11-25 21:57:22] total 401940
[2025-11-25 21:57:22] -rw-r--r--. 2 boinc boinc 410807282 Nov 25 21:53 ATLAS.root_0
[2025-11-25 21:57:22] -rw-r--r--. 2 boinc boinc     15120 Nov 25 21:53 start_atlas.sh
[2025-11-25 21:57:22] -rw-r--r--. 2 boinc boinc    590089 Nov 25 21:53 input.tar.gz
[2025-11-25 21:57:22] -rw-------. 1 boinc boinc    163840 Nov 25 21:57 result.tar.gz
21:57:24 (133296): run_atlas exited; CPU time 38.163808
21:57:24 (133296): called boinc_finish(0)

</stderr_txt>
]]>

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