Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:46:50 (24749): wrapper (7.7.26015): starting
00:46:50 (24749): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 00:46:50] Arguments: --nthreads 12
[2025-11-26 00:46:50] Threads: 12
[2025-11-26 00:46:50] Checking for CVMFS
[2025-11-26 00:46:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:46:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:46:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:46:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:46:50] 2.11.2.0 2925 287280 95060 153311 1 82 18677171 20275201 1 130560 1 128181910 99.975 15769963 13698 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:46:50] CVMFS is ok
[2025-11-26 00:46:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:46:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:46:50] Further information can be found at the LHC@home message board.
[2025-11-26 00:46:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:46:50] Checking for apptainer binary...
[2025-11-26 00:46:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:46:50] Running /usr/bin/apptainer --version
[2025-11-26 00:46:50] apptainer version 1.3.2-1.el7
[2025-11-26 00:46:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:46:52] c-205-10.aglt2.org
[2025-11-26 00:46:52] apptainer works
[2025-11-26 00:46:52] Set ATHENA_PROC_NUMBER=12
[2025-11-26 00:46:52] Set ATHENA_CORE_NUMBER=12
[2025-11-26 00:46:52] Starting ATLAS job with PandaID=6896764154
[2025-11-26 00:46:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:56:26]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:56:26] 2025-11-26 14:55:50,969 | INFO     | time since job start (32922s) is within the limit (172800.0s)
[2025-11-26 09:56:26] 2025-11-26 14:55:52,974 | INFO     | time since job start (32924s) is within the limit (172800.0s)
[2025-11-26 09:56:26] 2025-11-26 14:55:53,352 | INFO     | monitor loop #2474: job 0:6896764154 is in state 'finished'
[2025-11-26 09:56:26] 2025-11-26 14:55:53,352 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:56:26] 2025-11-26 14:55:54,519 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 09:56:26] 2025-11-26 14:55:54,522 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1784.5833333333333
[2025-11-26 09:56:26] 2025-11-26 14:55:54,525 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896764154/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:56:26] 2025-11-26 14:55:54,526 | INFO     | extracted standard info from prmon json
[2025-11-26 09:56:26] 2025-11-26 14:55:54,526 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:56:26] 2025-11-26 14:55:54,526 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:56:26] 2025-11-26 14:55:54,535 | INFO     | fitting pss+swap vs Time
[2025-11-26 09:56:26] 2025-11-26 14:55:54,535 | INFO     | sum of square deviations: 48826703509.442505
[2025-11-26 09:56:26] 2025-11-26 14:55:54,541 | INFO     | sum of deviations: 617186043943.5413
[2025-11-26 09:56:26] 2025-11-26 14:55:54,541 | INFO     | mean x: 1764152497.5537038
[2025-11-26 09:56:26] 2025-11-26 14:55:54,542 | INFO     | mean y: 3435571.4296296295
[2025-11-26 09:56:26] 2025-11-26 14:55:54,542 | INFO     | intersect: -22296048575.96372
[2025-11-26 09:56:26] 2025-11-26 14:55:54,542 | INFO     | chi2: 6.127442887476364
[2025-11-26 09:56:26] 2025-11-26 14:55:54,543 | INFO     | sum of square deviations: 47482929019.42792
[2025-11-26 09:56:26] 2025-11-26 14:55:54,549 | INFO     | sum of deviations: 826429944275.2399
[2025-11-26 09:56:26] 2025-11-26 14:55:54,549 | INFO     | mean x: 1764152345.0542057
[2025-11-26 09:56:26] 2025-11-26 14:55:54,549 | INFO     | mean y: 3459297.7158878506
[2025-11-26 09:56:26] 2025-11-26 14:55:54,549 | INFO     | intersect: -30701224560.764133
[2025-11-26 09:56:26] 2025-11-26 14:55:54,550 | INFO     | chi2: 3.106636532713326
[2025-11-26 09:56:26] 2025-11-26 14:55:54,550 | INFO     | current chi2=3.106636532713326 (change=49.29962482289543 %)
[2025-11-26 09:56:26] 2025-11-26 14:55:54,551 | INFO     | sum of square deviations: 46164038716.91344
[2025-11-26 09:56:26] 2025-11-26 14:55:54,556 | INFO     | sum of deviations: 889229936995.7661
[2025-11-26 09:56:26] 2025-11-26 14:55:54,556 | INFO     | mean x: 1764152192.554717
[2025-11-26 09:56:26] 2025-11-26 14:55:54,557 | INFO     | mean y: 3466536.9735849057
[2025-11-26 09:56:26] 2025-11-26 14:55:54,557 | INFO     | intersect: -33978329394.18754
[2025-11-26 09:56:26] 2025-11-26 14:55:54,557 | INFO     | chi2: 2.642339445159941
[2025-11-26 09:56:26] 2025-11-26 14:55:54,557 | INFO     | current chi2=2.642339445159941 (change=14.945330187946679 %)
[2025-11-26 09:56:26] 2025-11-26 14:55:54,558 | INFO     | right removable region: 529
[2025-11-26 09:56:26] 2025-11-26 14:55:54,558 | INFO     | sum of square deviations: 47482911329.427925
[2025-11-26 09:56:26] 2025-11-26 14:55:54,564 | INFO     | sum of deviations: 430847930660.89374
[2025-11-26 09:56:26] 2025-11-26 14:55:54,564 | INFO     | mean x: 1764152650.0542057
[2025-11-26 09:56:26] 2025-11-26 14:55:54,564 | INFO     | mean y: 3456672.3140186914
[2025-11-26 09:56:26] 2025-11-26 14:55:54,564 | INFO     | intersect: -16004018382.711084
[2025-11-26 09:56:26] 2025-11-26 14:55:54,565 | INFO     | chi2: 3.6712944526031155
[2025-11-26 09:56:26] 2025-11-26 14:55:54,565 | INFO     | current chi2=3.6712944526031155 (change=40.0843953991521 %)
[2025-11-26 09:56:26] 2025-11-26 14:55:54,566 | INFO     | sum of square deviations: 46164003336.91344
[2025-11-26 09:56:26] 2025-11-26 14:55:54,571 | INFO     | sum of deviations: 385942857837.8256
[2025-11-26 09:56:26] 2025-11-26 14:55:54,571 | INFO     | mean x: 1764152802.554717
[2025-11-26 09:56:26] 2025-11-26 14:55:54,572 | INFO     | mean y: 3461861.109433962
[2025-11-26 09:56:26] 2025-11-26 14:55:54,572 | INFO     | intersect: -14745306119.68111
[2025-11-26 09:56:26] 2025-11-26 14:55:54,572 | INFO     | chi2: 3.608033034140316
[2025-11-26 09:56:26] 2025-11-26 14:55:54,572 | INFO     | current chi2=3.608033034140316 (change=1.7231366015314866 %)
[2025-11-26 09:56:26] 2025-11-26 14:55:54,573 | INFO     | left removable region: 20
[2025-11-26 09:56:26] 2025-11-26 14:55:54,573 | INFO     | sum of square deviations: 40891210456.6718
[2025-11-26 09:56:26] 2025-11-26 14:55:54,578 | INFO     | sum of deviations: 607228680068.0432
[2025-11-26 09:56:26] 2025-11-26 14:55:54,579 | INFO     | mean x: 1764152772.0510805
[2025-11-26 09:56:26] 2025-11-26 14:55:54,582 | INFO     | mean y: 3500793.9214145383
[2025-11-26 09:56:26] 2025-11-26 14:55:54,582 | INFO     | intersect: -26193917850.509377
[2025-11-26 09:56:26] 2025-11-26 14:55:54,583 | INFO     | chi2: 0.06495255944806748
[2025-11-26 09:56:26] 2025-11-26 14:55:54,583 | INFO     | current memory leak: 14.85 B/s (using 509 data points, chi2=0.06)
[2025-11-26 09:56:26] 2025-11-26 14:55:54,584 | INFO     | could have reported an average CPU frequency of 2411 MHz (22 samples)
[2025-11-26 09:56:26] 2025-11-26 14:55:54,584 | INFO     | ..............................
[2025-11-26 09:56:26] 2025-11-26 14:55:54,584 | INFO     | . Timing measurements:
[2025-11-26 09:56:26] 2025-11-26 14:55:54,584 | INFO     | . get job = 0 s
[2025-11-26 09:56:26] 2025-11-26 14:55:54,584 | INFO     | . initial setup = 2 s
[2025-11-26 09:56:26] 2025-11-26 14:55:54,585 | INFO     | . payload setup = 8 s
[2025-11-26 09:56:26] 2025-11-26 14:55:54,585 | INFO     | . stage-in = 0 s
[2025-11-26 09:56:26] 2025-11-26 14:55:54,585 | INFO     | . payload execution = 32888 s
[2025-11-26 09:56:26] 2025-11-26 14:55:54,585 | INFO     | . stage-out = 3 s
[2025-11-26 09:56:26] 2025-11-26 14:55:54,585 | INFO     | . log creation = 0 s
[2025-11-26 09:56:26] 2025-11-26 14:55:54,586 | INFO     | ..............................
[2025-11-26 09:56:26] 2025-11-26 14:55:54,667 | INFO     | 
[2025-11-26 09:56:26] 2025-11-26 14:55:54,668 | INFO     | job summary report
[2025-11-26 09:56:26] 2025-11-26 14:55:54,668 | INFO     | --------------------------------------------------
[2025-11-26 09:56:26] 2025-11-26 14:55:54,668 | INFO     | PanDA job id: 6896764154
[2025-11-26 09:56:26] 2025-11-26 14:55:54,668 | INFO     | task id: 47556185
[2025-11-26 09:56:26] 2025-11-26 14:55:54,668 | INFO     | errors: (none)
[2025-11-26 09:56:26] 2025-11-26 14:55:54,668 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:56:26] 2025-11-26 14:55:54,669 | INFO     | pilot state: finished 
[2025-11-26 09:56:26] 2025-11-26 14:55:54,669 | INFO     | transexitcode: 0
[2025-11-26 09:56:26] 2025-11-26 14:55:54,669 | INFO     | exeerrorcode: 0
[2025-11-26 09:56:26] 2025-11-26 14:55:54,669 | INFO     | exeerrordiag: 
[2025-11-26 09:56:26] 2025-11-26 14:55:54,669 | INFO     | exitcode: 0
[2025-11-26 09:56:26] 2025-11-26 14:55:54,669 | INFO     | exitmsg: OK
[2025-11-26 09:56:26] 2025-11-26 14:55:54,670 | INFO     | cpuconsumptiontime: 319198 s
[2025-11-26 09:56:26] 2025-11-26 14:55:54,670 | INFO     | nevents: 1000
[2025-11-26 09:56:26] 2025-11-26 14:55:54,670 | INFO     | neventsw: 0
[2025-11-26 09:56:26] 2025-11-26 14:55:54,670 | INFO     | pid: 2542
[2025-11-26 09:56:26] 2025-11-26 14:55:54,670 | INFO     | pgrp: 2542
[2025-11-26 09:56:26] 2025-11-26 14:55:54,670 | INFO     | corecount: 12
[2025-11-26 09:56:26] 2025-11-26 14:55:54,671 | INFO     | event service: False
[2025-11-26 09:56:26] 2025-11-26 14:55:54,671 | INFO     | sizes: {0: 2284085, 1: 2284340, 6: 2284602, 12: 2284630, 32900: 2325340, 32904: 2334334, 32906: 2334518, 32911: 2334764}
[2025-11-26 09:56:26] 2025-11-26 14:55:54,671 | INFO     | --------------------------------------------------
[2025-11-26 09:56:26] 2025-11-26 14:55:54,671 | INFO     | 
[2025-11-26 09:56:26] 2025-11-26 14:55:54,671 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 09:56:26] 2025-11-26 14:55:54,696 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,697 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,698 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,698 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,698 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,698 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,698 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,698 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,699 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,699 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,699 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,699 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,699 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:56:26] 2025-11-26 14:55:54,700 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,700 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:56:26] 2025-11-26 14:55:54,700 | INFO     | job 6896764154 has completed (purged errors)
[2025-11-26 09:56:26] 2025-11-26 14:55:54,700 | INFO     | overall cleanup function is called
[2025-11-26 09:56:26] 2025-11-26 14:55:55,717 | INFO     | --- collectZombieJob: --- 10, [2542]
[2025-11-26 09:56:26] 2025-11-26 14:55:55,717 | INFO     | zombie collector waiting for pid 2542
[2025-11-26 09:56:26] 2025-11-26 14:55:55,717 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:56:26] 2025-11-26 14:55:55,717 | INFO     | collected zombie processes
[2025-11-26 09:56:26] 2025-11-26 14:55:55,717 | INFO     | will attempt to kill all subprocesses of pid=2542
[2025-11-26 09:56:26] 2025-11-26 14:55:55,817 | INFO     | process IDs to be killed: [2542] (in reverse order)
[2025-11-26 09:56:26] 2025-11-26 14:55:55,866 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:56:26] 2025-11-26 14:55:55,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:56:26] 2025-11-26 14:55:55,870 | INFO     | did not find any defunct processes belonging to 2542
[2025-11-26 09:56:26] 2025-11-26 14:55:55,874 | INFO     | did not find any defunct processes belonging to 2542
[2025-11-26 09:56:26] 2025-11-26 14:55:55,876 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:56:26] 2025-11-26 14:55:55,876 | INFO     | ready for new job
[2025-11-26 09:56:26] 2025-11-26 14:55:55,877 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:56:26] 2025-11-26 14:55:55,879 | INFO     | ***************************************
[2025-11-26 09:56:26] 2025-11-26 14:55:55,879 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:56:26] 2025-11-26 14:55:55,879 | INFO     | ***************************************
[2025-11-26 09:56:26] 2025-11-26 14:55:55,879 | INFO     | 
[2025-11-26 09:56:26] 2025-11-26 14:55:55,880 | INFO     | architecture information:
[2025-11-26 09:56:26] 2025-11-26 14:55:55,881 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:56:26] 2025-11-26 14:55:55,895 | INFO     | cat /etc/os-release:
[2025-11-26 09:56:26] NAME="CentOS Linux"
[2025-11-26 09:56:26] VERSION="7 (Core)"
[2025-11-26 09:56:26] ID="centos"
[2025-11-26 09:56:26] ID_LIKE="rhel fedora"
[2025-11-26 09:56:26] VERSION_ID="7"
[2025-11-26 09:56:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:56:26] ANSI_COLOR="0;31"
[2025-11-26 09:56:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:56:26] HOME_URL="https://www.centos.org/"
[2025-11-26 09:56:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:56:26] 
[2025-11-26 09:56:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:56:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:56:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:56:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:56:26] 
[2025-11-26 09:56:26] 2025-11-26 14:55:55,896 | INFO     | ***************************************
[2025-11-26 09:56:26] 2025-11-26 14:55:56,399 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 09:56:26] 2025-11-26 14:55:56,417 | INFO     | sufficient remaining disk space (28251783168 B)
[2025-11-26 09:56:26] 2025-11-26 14:55:56,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:56:26] 2025-11-26 14:55:56,417 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:56:26] 2025-11-26 14:55:56,418 | INFO     | update_server=False
[2025-11-26 09:56:26] 2025-11-26 14:55:56,418 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:56:26] 2025-11-26 14:55:56,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:56:26] 2025-11-26 14:55:56,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:56:26] 2025-11-26 14:55:56,419 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:56:26] 2025-11-26 14:55:56,550 | INFO     | all data control threads have been joined
[2025-11-26 09:56:26] 2025-11-26 14:55:56,861 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:56:26] 2025-11-26 14:55:56,861 | INFO     | aborting loop
[2025-11-26 09:56:26] 2025-11-26 14:55:57,074 | INFO     | all job control threads have been joined
[2025-11-26 09:56:26] 2025-11-26 14:55:57,422 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:57,423 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:57,477 | INFO     | [job] validate thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:57,555 | INFO     | [data] control thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:57,559 | INFO     | all payload control threads have been joined
[2025-11-26 09:56:26] 2025-11-26 14:55:57,619 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:57,633 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:57,769 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:56:26] 2025-11-26 14:55:57,791 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:57,866 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:58,079 | INFO     | [job] control thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:58,089 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:58,093 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:58,424 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:58,514 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:58,564 | INFO     | [payload] control thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:55:58,589 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:56:00,424 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:56:26] 2025-11-26 14:56:00,866 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140487764571968)>', '<ExcThread(monitor, started 140487457478400)>']
[2025-11-26 09:56:26] 2025-11-26 14:56:05,881 | INFO     | all workflow threads have been joined
[2025-11-26 09:56:26] 2025-11-26 14:56:05,881 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:56:26] 2025-11-26 14:56:05,891 | INFO     | traces error code: 0
[2025-11-26 09:56:26] 2025-11-26 14:56:05,891 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:56:26] 2025-11-26 14:56:26,162 | INFO     | PID=28486 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 09:56:26] 2025-11-26 14:56:26,163 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:56:26] 2025-11-26 14:56:26,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:56:26] 2025-11-26 14:56:26,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:56:26] 2025-11-26 14:56:26,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:56:26] 2025-11-26 14:56:26,163 | INFO     | [monitor] control thread has ended
[2025-11-26 09:56:26] 2025-11-26 14:56:26,257 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:56:26] 2025-11-26 14:56:26,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:56:26] 2025-11-26 14:56:26,265 [wrapper] pilotpid: 28486
[2025-11-26 09:56:26] 2025-11-26 14:56:26,269 [wrapper] Pilot exit status: 0
[2025-11-26 09:56:26] 2025-11-26 14:56:26,285 [wrapper] pandaids: 6896764154
[2025-11-26 09:56:26] 2025-11-26 14:56:26,320 [wrapper] cleanup supervisor_pilot  4015 28487
[2025-11-26 09:56:26] 2025-11-26 14:56:26,324 [wrapper] Test setup, not cleaning
[2025-11-26 09:56:26] 2025-11-26 14:56:26,328 [wrapper] apfmon messages muted
[2025-11-26 09:56:26] 2025-11-26 14:56:26,332 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:56:26] 2025-11-26 14:56:26,336 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:56:26]  *** Error codes and diagnostics ***
[2025-11-26 09:56:26]     "exeErrorCode": 0,
[2025-11-26 09:56:26]     "exeErrorDiag": "",
[2025-11-26 09:56:26]     "pilotErrorCode": 0,
[2025-11-26 09:56:26]     "pilotErrorDiag": "",
[2025-11-26 09:56:26]  *** Listing of results directory ***
[2025-11-26 09:56:26] total 1311296
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 03:00 pilot3.tar.gz
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 03:32 queuedata.json
[2025-11-26 09:56:26] -rwx------ 1 boincer umatlas     36292 Nov 25 03:35 runpilot2-wrapper.sh
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas       100 Nov 26 00:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:56:26] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 00:46 run_atlas
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas       105 Nov 26 00:46 job.xml
[2025-11-26 09:56:26] -rw-r--r-- 2 boincer umatlas 409754507 Nov 26 00:46 EVNT.47483658._004249.pool.root.1
[2025-11-26 09:56:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 00:46 start_atlas.sh
[2025-11-26 09:56:26] drwxrwx--x 2 boincer umatlas      4096 Nov 26 00:46 shared
[2025-11-26 09:56:26] -rw-r--r-- 2 boincer umatlas    590106 Nov 26 00:46 input.tar.gz
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas         0 Nov 26 00:46 boinc_lockfile
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas      2784 Nov 26 00:46 pandaJob.out
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas        57 Nov 26 00:46 setup.sh.local
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas    991877 Nov 26 00:47 agis_schedconf.cvmfs.json
[2025-11-26 09:56:26] drwx------ 5 boincer umatlas      4096 Nov 26 00:47 pilot3
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas       532 Nov 26 09:45 boinc_task_state.xml
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas      5956 Nov 26 09:54 init_data.xml
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas 915352539 Nov 26 09:55 HITS.47556185._000128.pool.root.1
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas      1061 Nov 26 09:55 memory_monitor_summary.json
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas   1516240 Nov 26 09:55 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas   2278049 Nov 26 09:55 log.47556185._000128.job.log.tgz.1
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas      8665 Nov 26 09:55 heartbeat.json
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 09:56 boinc_mmap_file
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas        29 Nov 26 09:56 wrapper_checkpoint.txt
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas       745 Nov 26 09:56 pilotlog.txt
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas        95 Nov 26 09:56 pilot_heartbeat.json
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas   4595208 Nov 26 09:56 log.47556185._000128.job.log.1
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas       353 Nov 26 09:56 output.list
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas       620 Nov 26 09:56 runtime_log
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas   6891520 Nov 26 09:56 result.tar.gz
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas      9345 Nov 26 09:56 runtime_log.err
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas       670 Nov 26 09:56 6VfMDmQh3h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1FMKDmKegBFo.diag
[2025-11-26 09:56:26] -rw-r--r-- 1 boincer umatlas     21324 Nov 26 09:56 stderr.txt
[2025-11-26 09:56:26] HITS file was successfully produced:
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas 915352539 Nov 26 09:55 shared/HITS.pool.root.1
[2025-11-26 09:56:26]  *** Contents of shared directory: ***
[2025-11-26 09:56:26] total 1301384
[2025-11-26 09:56:26] -rw-r--r-- 2 boincer umatlas 409754507 Nov 26 00:46 ATLAS.root_0
[2025-11-26 09:56:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 00:46 start_atlas.sh
[2025-11-26 09:56:26] -rw-r--r-- 2 boincer umatlas    590106 Nov 26 00:46 input.tar.gz
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas 915352539 Nov 26 09:55 HITS.pool.root.1
[2025-11-26 09:56:26] -rw------- 1 boincer umatlas   6891520 Nov 26 09:56 result.tar.gz
09:56:27 (24749): run_atlas exited; CPU time 307872.842198
09:56:27 (24749): called boinc_finish(0)

</stderr_txt>
]]>

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