Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
17:33:02 (364973): wrapper (7.7.26015): starting
17:33:02 (364973): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 17:33:02] Arguments: --nthreads 12
[2025-11-27 17:33:02] Threads: 12
[2025-11-27 17:33:02] Checking for CVMFS
[2025-11-27 17:33:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 17:33:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 17:33:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 17:33:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 17:33:03] 2.13.3.0 2257978 2139 46744 153377 3 81 3971032 4096001 0 130560 0 1273388 99.984 91393 2128 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-27 17:33:03] CVMFS is ok
[2025-11-27 17:33:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 17:33:03] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-27 17:33:03] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-27 17:33:03] Further information can be found at the LHC@home message board.
[2025-11-27 17:33:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 17:33:03] Checking for apptainer binary...
[2025-11-27 17:33:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 17:33:03] Running /usr/bin/apptainer --version
[2025-11-27 17:33:03] apptainer version 1.4.4
[2025-11-27 17:33:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 17:33:03] BoincUbuntu
[2025-11-27 17:33:03] apptainer works
[2025-11-27 17:33:03] Set ATHENA_PROC_NUMBER=12
[2025-11-27 17:33:03] Set ATHENA_CORE_NUMBER=12
[2025-11-27 17:33:03] Starting ATLAS job with PandaID=6891571911
[2025-11-27 17:33:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:07:51]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:07:51] 2025-11-27 21:07:17,815 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 21:07:51] 2025-11-27 21:07:18,336 | INFO     | monitor loop #969: job 0:6891571911 is in state 'finished'
[2025-11-27 21:07:51] 2025-11-27 21:07:18,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:07:51] 2025-11-27 21:07:18,465 | INFO     | time since job start (12850s) is within the limit (172800.0s)
[2025-11-27 21:07:51] 2025-11-27 21:07:19,892 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 21:07:51] 2025-11-27 21:07:19,893 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3692.452625
[2025-11-27 21:07:51] 2025-11-27 21:07:19,895 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6891571911/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:07:51] 2025-11-27 21:07:19,895 | INFO     | extracted standard info from prmon json
[2025-11-27 21:07:51] 2025-11-27 21:07:19,895 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:07:51] 2025-11-27 21:07:19,895 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:07:51] 2025-11-27 21:07:19,897 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:07:51] 2025-11-27 21:07:19,897 | INFO     | sum of square deviations: 2912890226.6255984
[2025-11-27 21:07:51] 2025-11-27 21:07:19,897 | INFO     | sum of deviations: 83542264740.99533
[2025-11-27 21:07:51] 2025-11-27 21:07:19,897 | INFO     | mean x: 1764271213.6398103
[2025-11-27 21:07:51] 2025-11-27 21:07:19,897 | INFO     | mean y: 3478228.8815165875
[2025-11-27 21:07:51] 2025-11-27 21:07:19,898 | INFO     | intersect: -50596167256.40602
[2025-11-27 21:07:51] 2025-11-27 21:07:19,898 | INFO     | chi2: 3.5596714688835633
[2025-11-27 21:07:51] 2025-11-27 21:07:19,898 | INFO     | sum of square deviations: 2710722957.0291133
[2025-11-27 21:07:51] 2025-11-27 21:07:19,898 | INFO     | sum of deviations: 142733791512.95154
[2025-11-27 21:07:51] 2025-11-27 21:07:19,898 | INFO     | mean x: 1764271061.1553397
[2025-11-27 21:07:51] 2025-11-27 21:07:19,898 | INFO     | mean y: 3522540.9077669904
[2025-11-27 21:07:51] 2025-11-27 21:07:19,898 | INFO     | intersect: -92894608993.44493
[2025-11-27 21:07:51] 2025-11-27 21:07:19,898 | INFO     | chi2: 1.5346439451913885
[2025-11-27 21:07:51] 2025-11-27 21:07:19,898 | INFO     | current chi2=1.5346439451913885 (change=56.88804546694006 %)
[2025-11-27 21:07:51] 2025-11-27 21:07:19,899 | INFO     | sum of square deviations: 2518086999.6219025
[2025-11-27 21:07:51] 2025-11-27 21:07:19,899 | INFO     | sum of deviations: 135943426876.13441
[2025-11-27 21:07:51] 2025-11-27 21:07:19,899 | INFO     | mean x: 1764270908.6517413
[2025-11-27 21:07:51] 2025-11-27 21:07:19,899 | INFO     | mean y: 3517164.0447761193
[2025-11-27 21:07:51] 2025-11-27 21:07:19,899 | INFO     | intersect: -95243800857.93063
[2025-11-27 21:07:51] 2025-11-27 21:07:19,899 | INFO     | chi2: 1.5338534053169652
[2025-11-27 21:07:51] 2025-11-27 21:07:19,899 | INFO     | current chi2=1.5338534053169652 (change=0.051512917826984625 %)
[2025-11-27 21:07:51] 2025-11-27 21:07:19,899 | INFO     | right removable region: 200
[2025-11-27 21:07:51] 2025-11-27 21:07:19,899 | INFO     | sum of square deviations: 2710665983.631083
[2025-11-27 21:07:51] 2025-11-27 21:07:19,900 | INFO     | sum of deviations: 35362870011.83493
[2025-11-27 21:07:51] 2025-11-27 21:07:19,900 | INFO     | mean x: 1764271366.145631
[2025-11-27 21:07:51] 2025-11-27 21:07:19,900 | INFO     | mean y: 3514197.5388349514
[2025-11-27 21:07:51] 2025-11-27 21:07:19,900 | INFO     | intersect: -23012858665.574318
[2025-11-27 21:07:51] 2025-11-27 21:07:19,900 | INFO     | chi2: 2.0867382097593383
[2025-11-27 21:07:51] 2025-11-27 21:07:19,900 | INFO     | current chi2=2.0867382097593383 (change=41.37834831106445 %)
[2025-11-27 21:07:51] 2025-11-27 21:07:19,900 | INFO     | sum of square deviations: 2518024047.6219025
[2025-11-27 21:07:51] 2025-11-27 21:07:19,900 | INFO     | sum of deviations: 27023000468.567127
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | mean x: 1764271518.6517413
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | mean y: 3520785.5223880596
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | intersect: -18930337340.34905
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | chi2: 2.0804566266331763
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | current chi2=2.0804566266331763 (change=0.3010240142622612 %)
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | left removable region: 20
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | sum of square deviations: 1808417325.6444414
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | sum of deviations: 68552849579.42222
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | mean x: 1764271488.1555555
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | mean y: 3572604.1277777776
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | intersect: -66875812054.328384
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | chi2: 0.015311281128979583
[2025-11-27 21:07:51] 2025-11-27 21:07:19,901 | INFO     | current memory leak: 37.91 B/s (using 180 data points, chi2=0.02)
[2025-11-27 21:07:51] 2025-11-27 21:07:19,902 | INFO     | could have reported an average CPU frequency of 3863 MHz (11 samples)
[2025-11-27 21:07:51] 2025-11-27 21:07:19,902 | INFO     | ..............................
[2025-11-27 21:07:51] 2025-11-27 21:07:19,902 | INFO     | . Timing measurements:
[2025-11-27 21:07:51] 2025-11-27 21:07:19,902 | INFO     | . get job = 0 s
[2025-11-27 21:07:51] 2025-11-27 21:07:19,902 | INFO     | . initial setup = 1 s
[2025-11-27 21:07:51] 2025-11-27 21:07:19,902 | INFO     | . payload setup = 3 s
[2025-11-27 21:07:51] 2025-11-27 21:07:19,902 | INFO     | . stage-in = 0 s
[2025-11-27 21:07:51] 2025-11-27 21:07:19,902 | INFO     | . payload execution = 12824 s
[2025-11-27 21:07:51] 2025-11-27 21:07:19,902 | INFO     | . stage-out = 1 s
[2025-11-27 21:07:51] 2025-11-27 21:07:19,902 | INFO     | . log creation = 0 s
[2025-11-27 21:07:51] 2025-11-27 21:07:19,902 | INFO     | ..............................
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | 
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | job summary report
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | --------------------------------------------------
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | PanDA job id: 6891571911
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | task id: 47493068
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | errors: (none)
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | pilot state: finished 
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | transexitcode: 0
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | exeerrorcode: 0
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | exeerrordiag: 
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | exitcode: 0
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | exitmsg: OK
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | cpuconsumptiontime: 148977 s
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | nevents: 1000
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | neventsw: 0
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | pid: 375628
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | pgrp: 375628
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | corecount: 12
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | event service: False
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | sizes: {0: 2284311, 2: 2284573, 10: 2284601, 12830: 2315704, 12831: 2315703, 12833: 2324767, 12836: 2324951, 12838: 2325197}
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | --------------------------------------------------
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | 
[2025-11-27 21:07:51] 2025-11-27 21:07:19,933 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-27 21:07:51] 2025-11-27 21:07:19,948 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,948 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,948 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,948 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,948 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,948 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,948 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,948 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,948 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | job 6891571911 has completed (purged errors)
[2025-11-27 21:07:51] 2025-11-27 21:07:19,949 | INFO     | overall cleanup function is called
[2025-11-27 21:07:51] 2025-11-27 21:07:20,962 | INFO     | --- collectZombieJob: --- 10, [375628]
[2025-11-27 21:07:51] 2025-11-27 21:07:20,962 | INFO     | zombie collector waiting for pid 375628
[2025-11-27 21:07:51] 2025-11-27 21:07:20,962 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:07:51] 2025-11-27 21:07:20,962 | INFO     | collected zombie processes
[2025-11-27 21:07:51] 2025-11-27 21:07:20,962 | INFO     | will attempt to kill all subprocesses of pid=375628
[2025-11-27 21:07:51] 2025-11-27 21:07:21,012 | INFO     | process IDs to be killed: [375628] (in reverse order)
[2025-11-27 21:07:51] 2025-11-27 21:07:21,038 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:07:51] 2025-11-27 21:07:21,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:07:51] 2025-11-27 21:07:21,040 | INFO     | did not find any defunct processes belonging to 375628
[2025-11-27 21:07:51] 2025-11-27 21:07:21,041 | INFO     | did not find any defunct processes belonging to 375628
[2025-11-27 21:07:51] 2025-11-27 21:07:21,042 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:07:51] 2025-11-27 21:07:21,042 | INFO     | ready for new job
[2025-11-27 21:07:51] 2025-11-27 21:07:21,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:07:51] 2025-11-27 21:07:21,043 | INFO     | ***************************************
[2025-11-27 21:07:51] 2025-11-27 21:07:21,043 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:07:51] 2025-11-27 21:07:21,043 | INFO     | ***************************************
[2025-11-27 21:07:51] 2025-11-27 21:07:21,044 | INFO     | 
[2025-11-27 21:07:51] 2025-11-27 21:07:21,044 | INFO     | architecture information:
[2025-11-27 21:07:51] 2025-11-27 21:07:21,044 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:07:51] 2025-11-27 21:07:21,053 | INFO     | cat /etc/os-release:
[2025-11-27 21:07:51] NAME="CentOS Linux"
[2025-11-27 21:07:51] VERSION="7 (Core)"
[2025-11-27 21:07:51] ID="centos"
[2025-11-27 21:07:51] ID_LIKE="rhel fedora"
[2025-11-27 21:07:51] VERSION_ID="7"
[2025-11-27 21:07:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:07:51] ANSI_COLOR="0;31"
[2025-11-27 21:07:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:07:51] HOME_URL="https://www.centos.org/"
[2025-11-27 21:07:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:07:51] 
[2025-11-27 21:07:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:07:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:07:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:07:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:07:51] 
[2025-11-27 21:07:51] 2025-11-27 21:07:21,053 | INFO     | ***************************************
[2025-11-27 21:07:51] 2025-11-27 21:07:21,556 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-27 21:07:51] 2025-11-27 21:07:21,567 | INFO     | sufficient remaining disk space (340740014080 B)
[2025-11-27 21:07:51] 2025-11-27 21:07:21,567 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:07:51] 2025-11-27 21:07:21,567 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:07:51] 2025-11-27 21:07:21,567 | INFO     | update_server=False
[2025-11-27 21:07:51] 2025-11-27 21:07:21,567 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:07:51] 2025-11-27 21:07:21,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:07:51] 2025-11-27 21:07:21,647 | INFO     | all payload control threads have been joined
[2025-11-27 21:07:51] 2025-11-27 21:07:21,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:07:51] 2025-11-27 21:07:21,844 | INFO     | aborting loop
[2025-11-27 21:07:51] 2025-11-27 21:07:21,852 | INFO     | all job control threads have been joined
[2025-11-27 21:07:51] 2025-11-27 21:07:22,069 | INFO     | all data control threads have been joined
[2025-11-27 21:07:51] 2025-11-27 21:07:22,571 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:22,573 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:22,614 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:22,652 | INFO     | [payload] control thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:22,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:07:51] 2025-11-27 21:07:22,849 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:22,855 | INFO     | [job] control thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:22,996 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:23,074 | INFO     | [data] control thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:23,324 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:23,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:07:51] 2025-11-27 21:07:23,803 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:23,816 | INFO     | [job] validate thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:23,816 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:23,816 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:23,987 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:24,835 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:27,807 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:07:51] 2025-11-27 21:07:29,672 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:07:51] 2025-11-27 21:07:30,811 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126704695383872)>', '<ExcThread(monitor, started 126704211191552)>']
[2025-11-27 21:07:51] 2025-11-27 21:07:35,819 | INFO     | all workflow threads have been joined
[2025-11-27 21:07:51] 2025-11-27 21:07:35,819 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:07:51] 2025-11-27 21:07:35,819 | INFO     | traces error code: 0
[2025-11-27 21:07:51] 2025-11-27 21:07:35,819 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:07:51] 2025-11-27 21:07:51,602 | INFO     | PID=368822 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 21:07:51] 2025-11-27 21:07:51,602 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:07:51] 2025-11-27 21:07:51,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:07:51] 2025-11-27 21:07:51,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:07:51] 2025-11-27 21:07:51,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:07:51] 2025-11-27 21:07:51,603 | INFO     | [monitor] control thread has ended
[2025-11-27 21:07:51] 2025-11-27 21:07:51,664 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:07:51] 2025-11-27 21:07:51,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:07:51] 2025-11-27 21:07:51,668 [wrapper] pilotpid: 368822
[2025-11-27 21:07:51] 2025-11-27 21:07:51,670 [wrapper] Pilot exit status: 0
[2025-11-27 21:07:51] 2025-11-27 21:07:51,675 [wrapper] pandaids: 6891571911
[2025-11-27 21:07:51] 2025-11-27 21:07:51,694 [wrapper] cleanup supervisor_pilot  582099 368823
[2025-11-27 21:07:51] 2025-11-27 21:07:51,696 [wrapper] Test setup, not cleaning
[2025-11-27 21:07:51] 2025-11-27 21:07:51,697 [wrapper] apfmon messages muted
[2025-11-27 21:07:51] 2025-11-27 21:07:51,699 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:07:51] 2025-11-27 21:07:51,700 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:07:51]  *** Error codes and diagnostics ***
[2025-11-27 21:07:51]     "exeErrorCode": 0,
[2025-11-27 21:07:51]     "exeErrorDiag": "",
[2025-11-27 21:07:51]     "pilotErrorCode": 0,
[2025-11-27 21:07:51]     "pilotErrorDiag": "",
[2025-11-27 21:07:51]  *** Listing of results directory ***
[2025-11-27 21:07:51] total 1318344
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc    576529 Nov 18 15:47 pilot3.tar.gz
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:03 queuedata.json
[2025-11-27 21:07:51] -rwx------ 1 boinc boinc     36292 Nov 18 16:03 runpilot2-wrapper.sh
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc       100 Nov 27 17:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:07:51] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 17:33 run_atlas
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc       105 Nov 27 17:33 job.xml
[2025-11-27 21:07:51] -rw-r--r-- 2 boinc boinc 410390002 Nov 27 17:33 EVNT.47493065._000311.pool.root.1
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc      9656 Nov 27 17:33 init_data.xml
[2025-11-27 21:07:51] drwxrwx--x 2 boinc boinc      4096 Nov 27 17:33 shared
[2025-11-27 21:07:51] -rw-r--r-- 2 boinc boinc    590096 Nov 27 17:33 input.tar.gz
[2025-11-27 21:07:51] -rw-r--r-- 2 boinc boinc     15120 Nov 27 17:33 start_atlas.sh
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc         0 Nov 27 17:33 boinc_lockfile
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc      2773 Nov 27 17:33 pandaJob.out
[2025-11-27 21:07:51] -rw------- 1 boinc boinc    991231 Nov 27 17:33 agis_schedconf.cvmfs.json
[2025-11-27 21:07:51] drwx------ 5 boinc boinc      4096 Nov 27 17:33 pilot3
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc       532 Nov 27 21:02 boinc_task_state.xml
[2025-11-27 21:07:51] -rw------- 1 boinc boinc 928081408 Nov 27 21:06 HITS.47493068._003103.pool.root.1
[2025-11-27 21:07:51] -rw------- 1 boinc boinc        95 Nov 27 21:06 pilot_heartbeat.json
[2025-11-27 21:07:51] -rw------- 1 boinc boinc      1033 Nov 27 21:07 memory_monitor_summary.json
[2025-11-27 21:07:51] -rw------- 1 boinc boinc   1516240 Nov 27 21:07 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:07:51] -rw------- 1 boinc boinc   1951725 Nov 27 21:07 log.47493068._003103.job.log.tgz.1
[2025-11-27 21:07:51] -rw------- 1 boinc boinc      8570 Nov 27 21:07 heartbeat.json
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc        29 Nov 27 21:07 wrapper_checkpoint.txt
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc      8192 Nov 27 21:07 boinc_mmap_file
[2025-11-27 21:07:51] -rw------- 1 boinc boinc       746 Nov 27 21:07 pilotlog.txt
[2025-11-27 21:07:51] -rw------- 1 boinc boinc   1844364 Nov 27 21:07 log.47493068._003103.job.log.1
[2025-11-27 21:07:51] -rw------- 1 boinc boinc       353 Nov 27 21:07 output.list
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc       620 Nov 27 21:07 runtime_log
[2025-11-27 21:07:51] -rw------- 1 boinc boinc   3819520 Nov 27 21:07 result.tar.gz
[2025-11-27 21:07:51] -rw------- 1 boinc boinc       658 Nov 27 21:07 wi0LDmVMdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQjFKDmKeYIyn.diag
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc      8784 Nov 27 21:07 runtime_log.err
[2025-11-27 21:07:51] -rw-r--r-- 1 boinc boinc     21539 Nov 27 21:07 stderr.txt
[2025-11-27 21:07:51] HITS file was successfully produced:
[2025-11-27 21:07:51] -rw------- 1 boinc boinc 928081408 Nov 27 21:06 shared/HITS.pool.root.1
[2025-11-27 21:07:51]  *** Contents of shared directory: ***
[2025-11-27 21:07:51] total 1311440
[2025-11-27 21:07:51] -rw-r--r-- 2 boinc boinc 410390002 Nov 27 17:33 ATLAS.root_0
[2025-11-27 21:07:51] -rw-r--r-- 2 boinc boinc    590096 Nov 27 17:33 input.tar.gz
[2025-11-27 21:07:51] -rw-r--r-- 2 boinc boinc     15120 Nov 27 17:33 start_atlas.sh
[2025-11-27 21:07:51] -rw------- 1 boinc boinc 928081408 Nov 27 21:06 HITS.pool.root.1
[2025-11-27 21:07:51] -rw------- 1 boinc boinc   3819520 Nov 27 21:07 result.tar.gz
21:07:53 (364973): run_atlas exited; CPU time 148715.879742
21:07:53 (364973): called boinc_finish(0)

</stderr_txt>
]]>

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