Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:21:22 (28901): wrapper (7.7.26015): starting
06:21:22 (28901): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 06:21:22] Arguments: --nthreads 8
[2025-11-28 06:21:22] Threads: 8
[2025-11-28 06:21:22] Checking for CVMFS
[2025-11-28 06:21:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 06:21:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 06:21:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 06:21:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 06:21:25] 2.11.2.0 23125 174628 136836 153399 0 62 21866437 25165825 1288 130560 10 58194732 99.895 27527177 1978 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 06:21:25] CVMFS is ok
[2025-11-28 06:21:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 06:21:25] Checking for apptainer binary...
[2025-11-28 06:21:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 06:21:25] Running /usr/bin/apptainer --version
[2025-11-28 06:21:25] apptainer version 1.3.2-1.el7
[2025-11-28 06:21:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 06:21:46] cg-vwn409.simple-grid.lan
[2025-11-28 06:21:46] apptainer works
[2025-11-28 06:21:46] Set ATHENA_PROC_NUMBER=8
[2025-11-28 06:21:46] Set ATHENA_CORE_NUMBER=8
[2025-11-28 06:21:46] Starting ATLAS job with PandaID=6896765409
[2025-11-28 06:21:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 05:57:14]  *** The last 200 lines of the pilot log: ***
[2025-11-29 05:57:14] 2025-11-29 04:55:54,781 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 05:57:14] 2025-11-29 04:55:54,826 | INFO     | time since job start (84618s) is within the limit (172800.0s)
[2025-11-29 05:57:14] 2025-11-29 04:55:55,964 | INFO     | PID=32681 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 05:57:14] 2025-11-29 04:55:55,964 | INFO     | .. there are 9 such processes running
[2025-11-29 05:57:14] 2025-11-29 04:55:56,965 | INFO     | time since job start (84620s) is within the limit (172800.0s)
[2025-11-29 05:57:14] 2025-11-29 04:55:57,293 | INFO     | monitor loop #5706: job 0:6896765409 is in state 'finished'
[2025-11-29 05:57:14] 2025-11-29 04:55:57,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 05:57:14] 2025-11-29 04:55:58,980 | INFO     | time since job start (84622s) is within the limit (172800.0s)
[2025-11-29 05:57:14] 2025-11-29 04:55:59,799 | INFO     | monitor loop #5707: job 0:6896765409 is in state 'finished'
[2025-11-29 05:57:14] 2025-11-29 04:55:59,799 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 05:57:14] 2025-11-29 04:56:00,987 | INFO     | time since job start (84624s) is within the limit (172800.0s)
[2025-11-29 05:57:14] 2025-11-29 04:56:02,307 | INFO     | monitor loop #5708: job 0:6896765409 is in state 'finished'
[2025-11-29 05:57:14] 2025-11-29 04:56:02,307 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 05:57:14] 2025-11-29 04:56:02,994 | INFO     | time since job start (84626s) is within the limit (172800.0s)
[2025-11-29 05:57:14] 2025-11-29 04:56:04,127 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 05:57:14] 2025-11-29 04:56:04,130 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-29 05:57:14] 2025-11-29 04:56:04,133 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6896765409/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 05:57:14] 2025-11-29 04:56:04,133 | INFO     | extracted standard info from prmon json
[2025-11-29 05:57:14] 2025-11-29 04:56:04,133 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 05:57:14] 2025-11-29 04:56:04,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 05:57:14] 2025-11-29 04:56:04,168 | INFO     | fitting pss+swap vs Time
[2025-11-29 05:57:14] 2025-11-29 04:56:04,170 | INFO     | sum of square deviations: 809614326397.3688
[2025-11-29 05:57:14] 2025-11-29 04:56:04,223 | INFO     | sum of deviations: 2747116054038.902
[2025-11-29 05:57:14] 2025-11-29 04:56:04,223 | INFO     | mean x: 1764350043.0994916
[2025-11-29 05:57:14] 2025-11-29 04:56:04,223 | INFO     | mean y: 2834708.862018882
[2025-11-29 05:57:14] 2025-11-29 04:56:04,223 | INFO     | intersect: -5983811241.328264
[2025-11-29 05:57:14] 2025-11-29 04:56:04,225 | INFO     | chi2: 25.40033283040519
[2025-11-29 05:57:14] 2025-11-29 04:56:04,227 | INFO     | sum of square deviations: 800827404796.3025
[2025-11-29 05:57:14] 2025-11-29 04:56:04,290 | INFO     | sum of deviations: 3201391419884.1724
[2025-11-29 05:57:14] 2025-11-29 04:56:04,290 | INFO     | mean x: 1764349890.6034985
[2025-11-29 05:57:14] 2025-11-29 04:56:04,290 | INFO     | mean y: 2842591.9635568513
[2025-11-29 05:57:14] 2025-11-29 04:56:04,290 | INFO     | intersect: -7050330872.90848
[2025-11-29 05:57:14] 2025-11-29 04:56:04,292 | INFO     | chi2: 22.15003478961738
[2025-11-29 05:57:14] 2025-11-29 04:56:04,292 | INFO     | current chi2=22.15003478961738 (change=12.79628130264922 %)
[2025-11-29 05:57:14] 2025-11-29 04:56:04,292 | INFO     | right removable region: 1371
[2025-11-29 05:57:14] 2025-11-29 04:56:04,297 | INFO     | sum of square deviations: 800826481256.3032
[2025-11-29 05:57:14] 2025-11-29 04:56:04,355 | INFO     | sum of deviations: 2175097795235.8738
[2025-11-29 05:57:14] 2025-11-29 04:56:04,356 | INFO     | mean x: 1764350195.6034985
[2025-11-29 05:57:14] 2025-11-29 04:56:04,356 | INFO     | mean y: 2844634.817784257
[2025-11-29 05:57:14] 2025-11-29 04:56:04,356 | INFO     | intersect: -4789247422.953371
[2025-11-29 05:57:14] 2025-11-29 04:56:04,358 | INFO     | chi2: 20.78133234236735
[2025-11-29 05:57:14] 2025-11-29 04:56:04,358 | INFO     | current chi2=20.78133234236735 (change=18.184803005843754 %)
[2025-11-29 05:57:14] 2025-11-29 04:56:04,358 | INFO     | left removable region: 10
[2025-11-29 05:57:14] 2025-11-29 04:56:04,360 | INFO     | sum of square deviations: 781718632073.7985
[2025-11-29 05:57:14] 2025-11-29 04:56:04,429 | INFO     | sum of deviations: 2253959863526.7773
[2025-11-29 05:57:14] 2025-11-29 04:56:04,429 | INFO     | mean x: 1764350165.1124172
[2025-11-29 05:57:14] 2025-11-29 04:56:04,429 | INFO     | mean y: 2862676.1256429097
[2025-11-29 05:57:14] 2025-11-29 04:56:04,429 | INFO     | intersect: -5084357065.356484
[2025-11-29 05:57:14] 2025-11-29 04:56:04,431 | INFO     | chi2: 13.66101493862054
[2025-11-29 05:57:14] 2025-11-29 04:56:04,431 | INFO     | current memory leak: 2.88 B/s (using 1361 data points, chi2=13.66)
[2025-11-29 05:57:14] 2025-11-29 04:56:04,432 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-29 05:57:14] 2025-11-29 04:56:04,433 | INFO     | ..............................
[2025-11-29 05:57:14] 2025-11-29 04:56:04,433 | INFO     | . Timing measurements:
[2025-11-29 05:57:14] 2025-11-29 04:56:04,433 | INFO     | . get job = 0 s
[2025-11-29 05:57:14] 2025-11-29 04:56:04,433 | INFO     | . initial setup = 11 s
[2025-11-29 05:57:14] 2025-11-29 04:56:04,433 | INFO     | . payload setup = 178 s
[2025-11-29 05:57:14] 2025-11-29 04:56:04,433 | INFO     | . stage-in = 0 s
[2025-11-29 05:57:14] 2025-11-29 04:56:04,433 | INFO     | . payload execution = 84144 s
[2025-11-29 05:57:14] 2025-11-29 04:56:04,433 | INFO     | . stage-out = 5 s
[2025-11-29 05:57:14] 2025-11-29 04:56:04,433 | INFO     | . log creation = 2 s
[2025-11-29 05:57:14] 2025-11-29 04:56:04,433 | INFO     | ..............................
[2025-11-29 05:57:14] 2025-11-29 04:56:05,004 | INFO     | time since job start (84629s) is within the limit (172800.0s)
[2025-11-29 05:57:14] 2025-11-29 04:56:05,041 | INFO     | 
[2025-11-29 05:57:14] 2025-11-29 04:56:05,041 | INFO     | job summary report
[2025-11-29 05:57:14] 2025-11-29 04:56:05,041 | INFO     | --------------------------------------------------
[2025-11-29 05:57:14] 2025-11-29 04:56:05,041 | INFO     | PanDA job id: 6896765409
[2025-11-29 05:57:14] 2025-11-29 04:56:05,041 | INFO     | task id: 47556185
[2025-11-29 05:57:14] 2025-11-29 04:56:05,041 | INFO     | errors: (none)
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | pilot state: finished 
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | transexitcode: 0
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | exeerrorcode: 0
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | exeerrordiag: 
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | exitcode: 0
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | exitmsg: OK
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | cpuconsumptiontime: 316621 s
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | nevents: 1000
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | neventsw: 0
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | pid: 6850
[2025-11-29 05:57:14] 2025-11-29 04:56:05,042 | INFO     | pgrp: 6850
[2025-11-29 05:57:14] 2025-11-29 04:56:05,043 | INFO     | corecount: 8
[2025-11-29 05:57:14] 2025-11-29 04:56:05,043 | INFO     | event service: False
[2025-11-29 05:57:14] 2025-11-29 04:56:05,043 | INFO     | sizes: {0: 2284085, 1: 2284340, 2: 2284340, 12: 2284368, 23: 2284396, 34: 2284424, 45: 2284580, 55: 2284608, 66: 2284636, 77: 2284664, 87: 2284720, 98: 2285028, 10
[2025-11-29 05:57:14] 2025-11-29 04:56:05,043 | INFO     | --------------------------------------------------
[2025-11-29 05:57:14] 2025-11-29 04:56:05,043 | INFO     | 
[2025-11-29 05:57:14] 2025-11-29 04:56:05,043 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-29 05:57:14] 2025-11-29 04:56:05,609 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,610 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,610 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,610 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,610 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,610 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,610 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,610 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,610 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,611 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,611 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,611 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,611 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,611 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,611 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 05:57:14] 2025-11-29 04:56:05,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,611 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 05:57:14] 2025-11-29 04:56:05,611 | INFO     | job 6896765409 has completed (purged errors)
[2025-11-29 05:57:14] 2025-11-29 04:56:05,612 | INFO     | overall cleanup function is called
[2025-11-29 05:57:14] 2025-11-29 04:56:06,635 | INFO     | --- collectZombieJob: --- 10, [6850]
[2025-11-29 05:57:14] 2025-11-29 04:56:06,635 | INFO     | zombie collector waiting for pid 6850
[2025-11-29 05:57:14] 2025-11-29 04:56:06,635 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 05:57:14] 2025-11-29 04:56:06,635 | INFO     | collected zombie processes
[2025-11-29 05:57:14] 2025-11-29 04:56:06,635 | INFO     | will attempt to kill all subprocesses of pid=6850
[2025-11-29 05:57:14] 2025-11-29 04:56:06,740 | INFO     | process IDs to be killed: [6850] (in reverse order)
[2025-11-29 05:57:14] 2025-11-29 04:56:06,823 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 05:57:14] 2025-11-29 04:56:06,824 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 05:57:14] 2025-11-29 04:56:06,827 | INFO     | did not find any defunct processes belonging to 6850
[2025-11-29 05:57:14] 2025-11-29 04:56:06,829 | INFO     | did not find any defunct processes belonging to 6850
[2025-11-29 05:57:14] 2025-11-29 04:56:06,833 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 05:57:14] 2025-11-29 04:56:06,833 | INFO     | ready for new job
[2025-11-29 05:57:14] 2025-11-29 04:56:06,834 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 05:57:14] 2025-11-29 04:56:06,838 | INFO     | ***************************************
[2025-11-29 05:57:14] 2025-11-29 04:56:06,839 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 05:57:14] 2025-11-29 04:56:06,839 | INFO     | ***************************************
[2025-11-29 05:57:14] 2025-11-29 04:56:06,839 | INFO     | 
[2025-11-29 05:57:14] 2025-11-29 04:56:06,839 | INFO     | pilot is running in a VM
[2025-11-29 05:57:14] 2025-11-29 04:56:06,840 | INFO     | architecture information:
[2025-11-29 05:57:14] 2025-11-29 04:56:06,840 | INFO     | executing command: cat /etc/os-release
[2025-11-29 05:57:14] 2025-11-29 04:56:07,053 | INFO     | cat /etc/os-release:
[2025-11-29 05:57:14] NAME="CentOS Linux"
[2025-11-29 05:57:14] VERSION="7 (Core)"
[2025-11-29 05:57:14] ID="centos"
[2025-11-29 05:57:14] ID_LIKE="rhel fedora"
[2025-11-29 05:57:14] VERSION_ID="7"
[2025-11-29 05:57:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 05:57:14] ANSI_COLOR="0;31"
[2025-11-29 05:57:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 05:57:14] HOME_URL="https://www.centos.org/"
[2025-11-29 05:57:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 05:57:14] 
[2025-11-29 05:57:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 05:57:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 05:57:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 05:57:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 05:57:14] 
[2025-11-29 05:57:14] 2025-11-29 04:56:07,054 | INFO     | ***************************************
[2025-11-29 05:57:14] 2025-11-29 04:56:07,557 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-29 05:57:14] 2025-11-29 04:56:07,761 | INFO     | sufficient remaining disk space (495231959040 B)
[2025-11-29 05:57:14] 2025-11-29 04:56:07,761 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 05:57:14] 2025-11-29 04:56:07,761 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 05:57:14] 2025-11-29 04:56:07,761 | INFO     | update_server=False
[2025-11-29 05:57:14] 2025-11-29 04:56:07,761 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 05:57:14] 2025-11-29 04:56:07,941 | INFO     | all job control threads have been joined
[2025-11-29 05:57:14] 2025-11-29 04:56:07,942 | INFO     | all data control threads have been joined
[2025-11-29 05:57:14] 2025-11-29 04:56:08,112 | INFO     | all payload control threads have been joined
[2025-11-29 05:57:14] 2025-11-29 04:56:08,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 05:57:14] 2025-11-29 04:56:08,330 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 05:57:14] 2025-11-29 04:56:08,330 | INFO     | aborting loop
[2025-11-29 05:57:14] 2025-11-29 04:56:08,767 | INFO     | [job] retrieve thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:08,770 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:08,845 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:08,947 | INFO     | [job] control thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:08,948 | INFO     | [data] control thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:08,971 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 05:57:14] 2025-11-29 04:56:09,081 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:09,118 | INFO     | [payload] control thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:09,336 | INFO     | [job] job monitor thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:09,563 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 05:57:14] 2025-11-29 04:56:09,569 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:09,788 | INFO     | [job] validate thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:10,100 | INFO     | [data] copytool_in thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:10,136 | INFO     | [data] copytool_out thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:10,198 | INFO     | [payload] validate_post thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:10,248 | INFO     | [payload] failed_post thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:10,569 | INFO     | [job] queue monitor thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:12,980 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 05:57:14] 2025-11-29 04:56:19,402 [wrapper] supervise_pilot (15 min periods counter: 95)
[2025-11-29 05:57:14] 2025-11-29 04:56:38,150 | INFO     | PID=32681 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 05:57:14] 2025-11-29 04:56:38,150 | INFO     | .. there are 9 such processes running
[2025-11-29 05:57:14] 2025-11-29 04:56:38,151 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 05:57:14] 2025-11-29 04:56:38,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 05:57:14] 2025-11-29 04:56:38,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 05:57:14] 2025-11-29 04:57:02,886 | INFO     | [monitor] cgroup control has ended
[2025-11-29 05:57:14] 2025-11-29 04:57:04,245 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139895452960576)>', '<ExcThread(monitor, started 139895154644736)>']
[2025-11-29 05:57:14] 2025-11-29 04:57:04,305 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 05:57:14] 2025-11-29 04:57:04,305 | INFO     | [monitor] control thread has ended
[2025-11-29 05:57:14] 2025-11-29 04:57:09,270 | INFO     | all workflow threads have been joined
[2025-11-29 05:57:14] 2025-11-29 04:57:09,270 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 05:57:14] 2025-11-29 04:57:09,270 | INFO     | traces error code: 0
[2025-11-29 05:57:14] 2025-11-29 04:57:09,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 05:57:14] 2025-11-29 04:57:09,567 [wrapper] ==== pilot stdout END ====
[2025-11-29 05:57:14] 2025-11-29 04:57:09,664 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 05:57:14] 2025-11-29 04:57:09,727 [wrapper] pilotpid: 32681
[2025-11-29 05:57:14] 2025-11-29 04:57:09,813 [wrapper] Pilot exit status: 0
[2025-11-29 05:57:14] 2025-11-29 04:57:10,207 [wrapper] pandaids: 6896765409
[2025-11-29 05:57:14] 2025-11-29 04:57:11,194 [wrapper] cleanup supervisor_pilot  4727 32682
[2025-11-29 05:57:14] 2025-11-29 04:57:11,250 [wrapper] Test setup, not cleaning
[2025-11-29 05:57:14] 2025-11-29 04:57:11,370 [wrapper] apfmon messages muted
[2025-11-29 05:57:14] 2025-11-29 04:57:11,503 [wrapper] ==== wrapper stdout END ====
[2025-11-29 05:57:14] 2025-11-29 04:57:11,597 [wrapper] ==== wrapper stderr END ====
[2025-11-29 05:57:14]  *** Error codes and diagnostics ***
[2025-11-29 05:57:14]     "exeErrorCode": 0,
[2025-11-29 05:57:14]     "exeErrorDiag": "",
[2025-11-29 05:57:14]     "pilotErrorCode": 0,
[2025-11-29 05:57:14]     "pilotErrorDiag": "",
[2025-11-29 05:57:14]  *** Listing of results directory ***
[2025-11-29 05:57:14] total 1337204
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc    576529 Nov 25 09:55 pilot3.tar.gz
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc      5112 Nov 25 10:08 queuedata.json
[2025-11-29 05:57:14] -rwx------. 1 boinc boinc     36292 Nov 25 10:09 runpilot2-wrapper.sh
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc       100 Nov 28 06:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 05:57:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 06:21 run_atlas
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc       105 Nov 28 06:21 job.xml
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc      6393 Nov 28 06:21 init_data.xml
[2025-11-29 05:57:14] -rw-r--r--. 2 boinc boinc 411991538 Nov 28 06:21 EVNT.47483658._004263.pool.root.1
[2025-11-29 05:57:14] -rw-r--r--. 2 boinc boinc     15847 Nov 28 06:21 start_atlas.sh
[2025-11-29 05:57:14] drwxrwx--x. 2 boinc boinc        68 Nov 28 06:21 shared
[2025-11-29 05:57:14] -rw-r--r--. 2 boinc boinc    590107 Nov 28 06:21 input.tar.gz
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc         0 Nov 28 06:21 boinc_lockfile
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc      2784 Nov 28 06:21 pandaJob.out
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc    991858 Nov 28 06:25 agis_schedconf.cvmfs.json
[2025-11-29 05:57:14] drwx------. 5 boinc boinc      4096 Nov 28 06:25 pilot3
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc       533 Nov 29 05:25 boinc_task_state.xml
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc 925931117 Nov 29 05:53 HITS.47556185._000270.pool.root.1
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc      1032 Nov 29 05:54 memory_monitor_summary.json
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc   1516240 Nov 29 05:54 agis_ddmendpoints.agis.ALL.json
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc   2464678 Nov 29 05:54 log.47556185._000270.job.log.tgz.1
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc      8636 Nov 29 05:56 heartbeat.json
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc        95 Nov 29 05:56 pilot_heartbeat.json
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc      8192 Nov 29 05:56 boinc_mmap_file
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc        29 Nov 29 05:56 wrapper_checkpoint.txt
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc      4884 Nov 29 05:57 pilotlog.txt
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc  11270725 Nov 29 05:57 log.47556185._000270.job.log.1
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc       353 Nov 29 05:57 output.list
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc       620 Nov 29 05:57 runtime_log
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc  13752320 Nov 29 05:57 result.tar.gz
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc       662 Nov 29 05:57 ymKMDm9D4h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9OJKDmvjKJVo.diag
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc      8817 Nov 29 05:57 runtime_log.err
[2025-11-29 05:57:14] -rw-r--r--. 1 boinc boinc     21475 Nov 29 05:57 stderr.txt
[2025-11-29 05:57:14] HITS file was successfully produced:
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc 925931117 Nov 29 05:53 shared/HITS.pool.root.1
[2025-11-29 05:57:14]  *** Contents of shared directory: ***
[2025-11-29 05:57:14] total 1320596
[2025-11-29 05:57:14] -rw-r--r--. 2 boinc boinc 411991538 Nov 28 06:21 ATLAS.root_0
[2025-11-29 05:57:14] -rw-r--r--. 2 boinc boinc     15847 Nov 28 06:21 start_atlas.sh
[2025-11-29 05:57:14] -rw-r--r--. 2 boinc boinc    590107 Nov 28 06:21 input.tar.gz
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc 925931117 Nov 29 05:53 HITS.pool.root.1
[2025-11-29 05:57:14] -rw-------. 1 boinc boinc  13752320 Nov 29 05:57 result.tar.gz
05:57:16 (28901): run_atlas exited; CPU time 317183.158647
05:57:16 (28901): called boinc_finish(0)

</stderr_txt>
]]>

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