Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
22:41:25 (270528): wrapper (7.7.26015): starting
22:41:25 (270528): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 22:41:25] Arguments: --nthreads 4
[2025-11-25 22:41:25] Threads: 4
[2025-11-25 22:41:25] Checking for CVMFS
[2025-11-25 22:41:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:41:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:41:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:41:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:41:25] 2.13.2.0 774864 3781 59200 153311 3 82 2922561 4096000 5100 130560 0 11112392 99.947 550396 1381 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-25 22:41:25] CVMFS is ok
[2025-11-25 22:41:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:41:25] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-25 22:41:25] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-25 22:41:25] Further information can be found at the LHC@home message board.
[2025-11-25 22:41:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:41:25] Checking for apptainer binary...
[2025-11-25 22:41:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:41:25] Running /usr/bin/apptainer --version
[2025-11-25 22:41:25] apptainer version 1.4.3
[2025-11-25 22:41:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:41:26] msi670e
[2025-11-25 22:41:26] apptainer works
[2025-11-25 22:41:26] Set ATHENA_PROC_NUMBER=4
[2025-11-25 22:41:26] Set ATHENA_CORE_NUMBER=4
[2025-11-25 22:41:26] Starting ATLAS job with PandaID=6895337358
[2025-11-25 22:41:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:17:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:17:18] 2025-11-26 12:16:11,515 | INFO     | time since job start (23678s) is within the limit (172800.0s)
[2025-11-26 05:17:18] 2025-11-26 12:16:11,550 | INFO     | monitor loop #1792: job 0:6895337358 is in state 'finished'
[2025-11-26 05:17:18] 2025-11-26 12:16:11,550 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:17:18] 2025-11-26 12:16:13,158 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 05:17:18] 2025-11-26 12:16:13,160 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4848.13284375
[2025-11-26 05:17:18] 2025-11-26 12:16:13,163 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6895337358/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:17:18] 2025-11-26 12:16:13,163 | INFO     | extracted standard info from prmon json
[2025-11-26 05:17:18] 2025-11-26 12:16:13,164 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:17:18] 2025-11-26 12:16:13,164 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:17:18] 2025-11-26 12:16:13,166 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:17:18] 2025-11-26 12:16:13,167 | INFO     | sum of square deviations: 18112179597.0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,168 | INFO     | sum of deviations: 114126994008.00002
[2025-11-26 05:17:18] 2025-11-26 12:16:13,168 | INFO     | mean x: 1764147515.5
[2025-11-26 05:17:18] 2025-11-26 12:16:13,168 | INFO     | mean y: 2254624.3659793814
[2025-11-26 05:17:18] 2025-11-26 12:16:13,168 | INFO     | intersect: -11113848319.094503
[2025-11-26 05:17:18] 2025-11-26 12:16:13,168 | INFO     | chi2: 2.504864379357428
[2025-11-26 05:17:18] 2025-11-26 12:16:13,169 | INFO     | sum of square deviations: 17420948032.0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,170 | INFO     | sum of deviations: 151664213441.0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,170 | INFO     | mean x: 1764147363.0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,170 | INFO     | mean y: 2262844.9347258485
[2025-11-26 05:17:18] 2025-11-26 12:16:13,170 | INFO     | intersect: -15356144844.011953
[2025-11-26 05:17:18] 2025-11-26 12:16:13,171 | INFO     | chi2: 1.567200608095134
[2025-11-26 05:17:18] 2025-11-26 12:16:13,171 | INFO     | current chi2=1.567200608095134 (change=37.43371413596582 %)
[2025-11-26 05:17:18] 2025-11-26 12:16:13,171 | INFO     | sum of square deviations: 16747530754.5
[2025-11-26 05:17:18] 2025-11-26 12:16:13,172 | INFO     | sum of deviations: 148244917336.50003
[2025-11-26 05:17:18] 2025-11-26 12:16:13,172 | INFO     | mean x: 1764147210.5
[2025-11-26 05:17:18] 2025-11-26 12:16:13,172 | INFO     | mean y: 2262070.67989418
[2025-11-26 05:17:18] 2025-11-26 12:16:13,172 | INFO     | intersect: -15613523994.959578
[2025-11-26 05:17:18] 2025-11-26 12:16:13,173 | INFO     | chi2: 1.5668905189242317
[2025-11-26 05:17:18] 2025-11-26 12:16:13,173 | INFO     | current chi2=1.5668905189242317 (change=0.019786182400678778 %)
[2025-11-26 05:17:18] 2025-11-26 12:16:13,173 | INFO     | right removable region: 377
[2025-11-26 05:17:18] 2025-11-26 12:16:13,173 | INFO     | sum of square deviations: 17420948032.0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,174 | INFO     | sum of deviations: 55972685732.000015
[2025-11-26 05:17:18] 2025-11-26 12:16:13,174 | INFO     | mean x: 1764147668.0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,174 | INFO     | mean y: 2267382.511749347
[2025-11-26 05:17:18] 2025-11-26 12:16:13,174 | INFO     | intersect: -5665856006.894197
[2025-11-26 05:17:18] 2025-11-26 12:16:13,175 | INFO     | chi2: 0.9731120155253397
[2025-11-26 05:17:18] 2025-11-26 12:16:13,175 | INFO     | current chi2=0.9731120155253397 (change=61.15110967504869 %)
[2025-11-26 05:17:18] 2025-11-26 12:16:13,175 | INFO     | sum of square deviations: 16747530754.5
[2025-11-26 05:17:18] 2025-11-26 12:16:13,176 | INFO     | sum of deviations: 51017196158.000015
[2025-11-26 05:17:18] 2025-11-26 12:16:13,176 | INFO     | mean x: 1764147820.5
[2025-11-26 05:17:18] 2025-11-26 12:16:13,176 | INFO     | mean y: 2268502.2645502645
[2025-11-26 05:17:18] 2025-11-26 12:16:13,176 | INFO     | intersect: -5371770018.964827
[2025-11-26 05:17:18] 2025-11-26 12:16:13,176 | INFO     | chi2: 0.9709125005714603
[2025-11-26 05:17:18] 2025-11-26 12:16:13,176 | INFO     | current chi2=0.9709125005714603 (change=0.2260289585153214 %)
[2025-11-26 05:17:18] 2025-11-26 12:16:13,176 | INFO     | left removable region: 20
[2025-11-26 05:17:18] 2025-11-26 12:16:13,177 | INFO     | sum of square deviations: 14108461738.0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,178 | INFO     | sum of deviations: 82413477210.00002
[2025-11-26 05:17:18] 2025-11-26 12:16:13,178 | INFO     | mean x: 1764147790.0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,178 | INFO     | mean y: 2277127.6694677873
[2025-11-26 05:17:18] 2025-11-26 12:16:13,178 | INFO     | intersect: -10302854387.458216
[2025-11-26 05:17:18] 2025-11-26 12:16:13,178 | INFO     | chi2: 0.019986286923950675
[2025-11-26 05:17:18] 2025-11-26 12:16:13,178 | INFO     | current memory leak: 5.84 B/s (using 357 data points, chi2=0.02)
[2025-11-26 05:17:18] 2025-11-26 12:16:13,178 | INFO     | could have reported an average CPU frequency of 5000 MHz (17 samples)
[2025-11-26 05:17:18] 2025-11-26 12:16:13,179 | INFO     | ..............................
[2025-11-26 05:17:18] 2025-11-26 12:16:13,179 | INFO     | . Timing measurements:
[2025-11-26 05:17:18] 2025-11-26 12:16:13,179 | INFO     | . get job = 0 s
[2025-11-26 05:17:18] 2025-11-26 12:16:13,179 | INFO     | . initial setup = 3 s
[2025-11-26 05:17:18] 2025-11-26 12:16:13,179 | INFO     | . payload setup = 2 s
[2025-11-26 05:17:18] 2025-11-26 12:16:13,179 | INFO     | . stage-in = 0 s
[2025-11-26 05:17:18] 2025-11-26 12:16:13,179 | INFO     | . payload execution = 23649 s
[2025-11-26 05:17:18] 2025-11-26 12:16:13,179 | INFO     | . stage-out = 6 s
[2025-11-26 05:17:18] 2025-11-26 12:16:13,179 | INFO     | . log creation = 0 s
[2025-11-26 05:17:18] 2025-11-26 12:16:13,179 | INFO     | ..............................
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | 
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | job summary report
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | --------------------------------------------------
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | PanDA job id: 6895337358
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | task id: 47556137
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | errors: (none)
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | pilot state: finished 
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | transexitcode: 0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | exeerrorcode: 0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | exeerrordiag: 
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | exitcode: 0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | exitmsg: OK
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | cpuconsumptiontime: 93752 s
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | nevents: 1000
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | neventsw: 0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | pid: 281051
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | pgrp: 281051
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | corecount: 4
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | event service: False
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | sizes: {0: 2284220, 2: 2284482, 11: 2284510, 23655: 2320664, 23663: 2329672, 23665: 2329728, 23666: 2330166}
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | --------------------------------------------------
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | 
[2025-11-26 05:17:18] 2025-11-26 12:16:13,218 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,231 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,232 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,232 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,232 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:17:18] 2025-11-26 12:16:13,232 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,232 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:17:18] 2025-11-26 12:16:13,232 | INFO     | job 6895337358 has completed (purged errors)
[2025-11-26 05:17:18] 2025-11-26 12:16:13,232 | INFO     | overall cleanup function is called
[2025-11-26 05:17:18] 2025-11-26 12:16:14,238 | INFO     | --- collectZombieJob: --- 10, [281051]
[2025-11-26 05:17:18] 2025-11-26 12:16:14,239 | INFO     | zombie collector waiting for pid 281051
[2025-11-26 05:17:18] 2025-11-26 12:16:14,239 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:17:18] 2025-11-26 12:16:14,239 | INFO     | collected zombie processes
[2025-11-26 05:17:18] 2025-11-26 12:16:14,239 | INFO     | will attempt to kill all subprocesses of pid=281051
[2025-11-26 05:17:18] 2025-11-26 12:16:14,320 | INFO     | process IDs to be killed: [281051] (in reverse order)
[2025-11-26 05:17:18] 2025-11-26 12:16:14,359 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:17:18] 2025-11-26 12:16:14,359 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:17:18] 2025-11-26 12:16:14,362 | INFO     | did not find any defunct processes belonging to 281051
[2025-11-26 05:17:18] 2025-11-26 12:16:14,364 | INFO     | did not find any defunct processes belonging to 281051
[2025-11-26 05:17:18] 2025-11-26 12:16:14,365 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:17:18] 2025-11-26 12:16:14,365 | INFO     | ready for new job
[2025-11-26 05:17:18] 2025-11-26 12:16:14,365 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:17:18] 2025-11-26 12:16:14,366 | INFO     | ***************************************
[2025-11-26 05:17:18] 2025-11-26 12:16:14,366 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:17:18] 2025-11-26 12:16:14,366 | INFO     | ***************************************
[2025-11-26 05:17:18] 2025-11-26 12:16:14,366 | INFO     | 
[2025-11-26 05:17:18] 2025-11-26 12:16:14,367 | INFO     | architecture information:
[2025-11-26 05:17:18] 2025-11-26 12:16:14,367 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:17:18] 2025-11-26 12:16:14,376 | INFO     | cat /etc/os-release:
[2025-11-26 05:17:18] NAME="CentOS Linux"
[2025-11-26 05:17:18] VERSION="7 (Core)"
[2025-11-26 05:17:18] ID="centos"
[2025-11-26 05:17:18] ID_LIKE="rhel fedora"
[2025-11-26 05:17:18] VERSION_ID="7"
[2025-11-26 05:17:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:17:18] ANSI_COLOR="0;31"
[2025-11-26 05:17:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:17:18] HOME_URL="https://www.centos.org/"
[2025-11-26 05:17:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:17:18] 
[2025-11-26 05:17:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:17:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:17:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:17:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:17:18] 
[2025-11-26 05:17:18] 2025-11-26 12:16:14,376 | INFO     | ***************************************
[2025-11-26 05:17:18] 2025-11-26 12:16:14,879 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-11-26 05:17:18] 2025-11-26 12:16:14,889 | INFO     | sufficient remaining disk space (438067789824 B)
[2025-11-26 05:17:18] 2025-11-26 12:16:14,889 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:17:18] 2025-11-26 12:16:14,889 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:17:18] 2025-11-26 12:16:14,889 | INFO     | update_server=False
[2025-11-26 05:17:18] 2025-11-26 12:16:14,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:17:18] 2025-11-26 12:16:14,889 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:17:18] 2025-11-26 12:16:14,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:17:18] 2025-11-26 12:16:15,057 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:17:18] 2025-11-26 12:16:15,057 | INFO     | aborting loop
[2025-11-26 05:17:18] 2025-11-26 12:16:15,336 | INFO     | all payload control threads have been joined
[2025-11-26 05:17:18] 2025-11-26 12:16:15,531 | INFO     | all data control threads have been joined
[2025-11-26 05:17:18] 2025-11-26 12:16:15,894 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:15,894 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:16,062 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:16,123 | INFO     | all job control threads have been joined
[2025-11-26 05:17:18] 2025-11-26 12:16:16,341 | INFO     | [payload] control thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:16,417 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:16,536 | INFO     | [data] control thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:16,791 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:16,798 | INFO     | [job] validate thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:16,799 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:16,810 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:16,997 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:17,128 | INFO     | [job] control thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:17,342 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:17,354 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:17,355 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:17:18] 2025-11-26 12:16:17,357 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:21,360 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:17:18] 2025-11-26 12:16:44,671 | INFO     | PID=274380 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 05:17:18] 2025-11-26 12:16:44,671 | INFO     | .. there are 7 such processes running
[2025-11-26 05:17:18] 2025-11-26 12:16:44,672 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:17:18] 2025-11-26 12:16:44,672 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:17:18] 2025-11-26 12:16:44,672 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:17:18] 2025-11-26 12:17:12,190 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:17:18] 2025-11-26 12:17:13,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136253928720192)>', '<ExcThread(monitor, started 136253441816320)>']
[2025-11-26 05:17:18] 2025-11-26 12:17:13,812 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:17:18] 2025-11-26 12:17:13,812 | INFO     | [monitor] control thread has ended
[2025-11-26 05:17:18] 2025-11-26 12:17:18,087 | INFO     | all workflow threads have been joined
[2025-11-26 05:17:18] 2025-11-26 12:17:18,087 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:17:18] 2025-11-26 12:17:18,087 | INFO     | traces error code: 0
[2025-11-26 05:17:18] 2025-11-26 12:17:18,087 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:17:18] 2025-11-26 12:17:18,141 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:17:18] 2025-11-26 12:17:18,143 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:17:18] 2025-11-26 12:17:18,144 [wrapper] pilotpid: 274380
[2025-11-26 05:17:18] 2025-11-26 12:17:18,146 [wrapper] Pilot exit status: 0
[2025-11-26 05:17:18] 2025-11-26 12:17:18,151 [wrapper] pandaids: 6895337358
[2025-11-26 05:17:18] 2025-11-26 12:17:18,175 [wrapper] cleanup supervisor_pilot  628091 274381
[2025-11-26 05:17:18] 2025-11-26 12:17:18,177 [wrapper] Test setup, not cleaning
[2025-11-26 05:17:18] 2025-11-26 12:17:18,178 [wrapper] apfmon messages muted
[2025-11-26 05:17:18] 2025-11-26 12:17:18,180 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:17:18] 2025-11-26 12:17:18,181 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:17:18]  *** Error codes and diagnostics ***
[2025-11-26 05:17:18]     "exeErrorCode": 0,
[2025-11-26 05:17:18]     "exeErrorDiag": "",
[2025-11-26 05:17:18]     "pilotErrorCode": 0,
[2025-11-26 05:17:18]     "pilotErrorDiag": "",
[2025-11-26 05:17:18]  *** Listing of results directory ***
[2025-11-26 05:17:18] total 1311196
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc    576529 Nov 22 00:15 pilot3.tar.gz
[2025-11-26 05:17:18] -rwx------ 1 boinc boinc     36292 Nov 22 00:18 runpilot2-wrapper.sh
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc      5112 Nov 22 00:18 queuedata.json
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc       100 Nov 25 22:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:17:18] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 22:41 run_atlas
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc       105 Nov 25 22:41 job.xml
[2025-11-26 05:17:18] drwxrwx--x 2 boinc boinc      4096 Nov 25 22:41 shared
[2025-11-26 05:17:18] -rw-r--r-- 2 boinc boinc    590102 Nov 25 22:41 input.tar.gz
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc      9948 Nov 25 22:41 init_data.xml
[2025-11-26 05:17:18] -rw-r--r-- 2 boinc boinc 407130185 Nov 25 22:41 EVNT.47483658._000300.pool.root.1
[2025-11-26 05:17:18] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:41 start_atlas.sh
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc         0 Nov 25 22:41 boinc_lockfile
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc      2784 Nov 25 22:41 pandaJob.out
[2025-11-26 05:17:18] -rw------- 1 boinc boinc    991877 Nov 25 22:41 agis_schedconf.cvmfs.json
[2025-11-26 05:17:18] drwx------ 5 boinc boinc      4096 Nov 25 22:41 pilot3
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc       531 Nov 26 05:12 boinc_task_state.xml
[2025-11-26 05:17:18] -rw------- 1 boinc boinc 922289559 Nov 26 05:15 HITS.47556137._002970.pool.root.1
[2025-11-26 05:17:18] -rw------- 1 boinc boinc      1031 Nov 26 05:15 memory_monitor_summary.json
[2025-11-26 05:17:18] -rw------- 1 boinc boinc   1516240 Nov 26 05:16 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:17:18] -rw------- 1 boinc boinc   1225422 Nov 26 05:16 log.47556137._002970.job.log.tgz.1
[2025-11-26 05:17:18] -rw------- 1 boinc boinc      8541 Nov 26 05:16 heartbeat.json
[2025-11-26 05:17:18] -rw------- 1 boinc boinc        95 Nov 26 05:16 pilot_heartbeat.json
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc      8192 Nov 26 05:17 boinc_mmap_file
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc        28 Nov 26 05:17 wrapper_checkpoint.txt
[2025-11-26 05:17:18] -rw------- 1 boinc boinc      4830 Nov 26 05:17 pilotlog.txt
[2025-11-26 05:17:18] -rw------- 1 boinc boinc   3430798 Nov 26 05:17 log.47556137._002970.job.log.1
[2025-11-26 05:17:18] -rw------- 1 boinc boinc       353 Nov 26 05:17 output.list
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc       620 Nov 26 05:17 runtime_log
[2025-11-26 05:17:18] -rw------- 1 boinc boinc   4679680 Nov 26 05:17 result.tar.gz
[2025-11-26 05:17:18] -rw------- 1 boinc boinc       660 Nov 26 05:17 UMKMDmj4wg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm10HKDmmUGjKo.diag
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc      8920 Nov 26 05:17 runtime_log.err
[2025-11-26 05:17:18] -rw-r--r-- 1 boinc boinc     21330 Nov 26 05:17 stderr.txt
[2025-11-26 05:17:18] HITS file was successfully produced:
[2025-11-26 05:17:18] -rw------- 1 boinc boinc 922289559 Nov 26 05:15 shared/HITS.pool.root.1
[2025-11-26 05:17:18]  *** Contents of shared directory: ***
[2025-11-26 05:17:18] total 1303444
[2025-11-26 05:17:18] -rw-r--r-- 2 boinc boinc    590102 Nov 25 22:41 input.tar.gz
[2025-11-26 05:17:18] -rw-r--r-- 2 boinc boinc 407130185 Nov 25 22:41 ATLAS.root_0
[2025-11-26 05:17:18] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:41 start_atlas.sh
[2025-11-26 05:17:18] -rw------- 1 boinc boinc 922289559 Nov 26 05:15 HITS.pool.root.1
[2025-11-26 05:17:18] -rw------- 1 boinc boinc   4679680 Nov 26 05:17 result.tar.gz
05:17:20 (270528): run_atlas exited; CPU time 93714.065713
05:17:20 (270528): called boinc_finish(0)

</stderr_txt>
]]>

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