Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:26:50 (20665): wrapper (7.7.26015): starting
00:26:50 (20665): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:26:50] Arguments: --nthreads 8
[2025-11-26 00:26:50] Threads: 8
[2025-11-26 00:26:50] Checking for CVMFS
[2025-11-26 00:26:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:26:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:26:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:26:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:26:51] 2.11.2.0 14221 117246 133876 153311 0 82 10078460 18432001 1885 130560 0 86607294 99.975 4882593 30679 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:26:51] CVMFS is ok
[2025-11-26 00:26:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:26:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:26:51] Further information can be found at the LHC@home message board.
[2025-11-26 00:26:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:26:51] Checking for apptainer binary...
[2025-11-26 00:26:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:26:51] Running /usr/bin/apptainer --version
[2025-11-26 00:26:51] apptainer version 1.3.2-1.el7
[2025-11-26 00:26:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:26:52] c-206-9.aglt2.org
[2025-11-26 00:26:52] apptainer works
[2025-11-26 00:26:52] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:26:52] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:26:52] Starting ATLAS job with PandaID=6891567927
[2025-11-26 00:26:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:12:20 (18923): wrapper (7.7.26015): starting
01:12:20 (18923): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 01:12:20] Arguments: --nthreads 8
[2025-11-26 01:12:20] Threads: 8
[2025-11-26 01:12:20] This job has been restarted, cleaning up previous attempt
[2025-11-26 01:12:20] Checking for CVMFS
[2025-11-26 01:12:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 01:12:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 01:12:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 01:12:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 01:12:20] 2.11.2.0 14221 117291 133816 153311 2 90 10078460 18432001 1 130560 0 86694715 99.975 4882600 30680 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 01:12:20] CVMFS is ok
[2025-11-26 01:12:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 01:12:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 01:12:20] Further information can be found at the LHC@home message board.
[2025-11-26 01:12:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 01:12:20] Checking for apptainer binary...
[2025-11-26 01:12:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 01:12:20] Running /usr/bin/apptainer --version
[2025-11-26 01:12:20] apptainer version 1.3.2-1.el7
[2025-11-26 01:12:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 01:12:21] c-206-9.aglt2.org
[2025-11-26 01:12:21] apptainer works
[2025-11-26 01:12:21] Set ATHENA_PROC_NUMBER=8
[2025-11-26 01:12:21] Set ATHENA_CORE_NUMBER=8
[2025-11-26 01:12:21] Starting ATLAS job with PandaID=6891567927
[2025-11-26 01:12:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:45:37]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:45:37] 2025-11-27 01:44:32,918 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2150.6666666666665
[2025-11-26 20:45:37] 2025-11-27 01:44:32,920 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891567927/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:45:37] 2025-11-27 01:44:32,921 | INFO     | extracted standard info from prmon json
[2025-11-26 20:45:37] 2025-11-27 01:44:32,921 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:45:37] 2025-11-27 01:44:32,921 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:45:37] 2025-11-27 01:44:32,937 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:45:37] 2025-11-27 01:44:32,939 | INFO     | sum of square deviations: 475297260398.77374
[2025-11-26 20:45:37] 2025-11-27 01:44:32,944 | INFO     | monitor loop #5028: job 0:6891567927 is in state 'finished'
[2025-11-26 20:45:37] 2025-11-27 01:44:32,949 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:45:37] 2025-11-27 01:44:32,964 | INFO     | sum of deviations: 2389469485987.3765
[2025-11-26 20:45:37] 2025-11-27 01:44:32,964 | INFO     | mean x: 1764172716.7658284
[2025-11-26 20:45:37] 2025-11-27 01:44:32,964 | INFO     | mean y: 2866461.527320035
[2025-11-26 20:45:37] 2025-11-27 01:44:32,964 | INFO     | intersect: -8866187130.716513
[2025-11-26 20:45:37] 2025-11-27 01:44:32,965 | INFO     | chi2: 5.803081970683552
[2025-11-26 20:45:37] 2025-11-27 01:44:32,967 | INFO     | sum of square deviations: 469140893345.82825
[2025-11-26 20:45:37] 2025-11-27 01:44:32,992 | INFO     | sum of deviations: 2763283127857.0576
[2025-11-26 20:45:37] 2025-11-27 01:44:32,992 | INFO     | mean x: 1764172564.2691638
[2025-11-26 20:45:37] 2025-11-27 01:44:32,992 | INFO     | mean y: 2875717.281358885
[2025-11-26 20:45:37] 2025-11-27 01:44:32,992 | INFO     | intersect: -10388263385.316017
[2025-11-26 20:45:37] 2025-11-27 01:44:32,993 | INFO     | chi2: 2.7267110567005295
[2025-11-26 20:45:37] 2025-11-27 01:44:32,993 | INFO     | current chi2=2.7267110567005295 (change=53.0127082389059 %)
[2025-11-26 20:45:37] 2025-11-27 01:44:32,994 | INFO     | sum of square deviations: 463037922642.8573
[2025-11-26 20:45:37] 2025-11-27 01:44:33,019 | INFO     | sum of deviations: 2848285626552.5293
[2025-11-26 20:45:37] 2025-11-27 01:44:33,019 | INFO     | mean x: 1764172411.7725284
[2025-11-26 20:45:37] 2025-11-27 01:44:33,019 | INFO     | mean y: 2877837.105861767
[2025-11-26 20:45:37] 2025-11-27 01:44:33,019 | INFO     | intersect: -10849077645.35664
[2025-11-26 20:45:37] 2025-11-27 01:44:33,020 | INFO     | chi2: 2.3858560317605955
[2025-11-26 20:45:37] 2025-11-27 01:44:33,020 | INFO     | current chi2=2.3858560317605955 (change=12.500592026512239 %)
[2025-11-26 20:45:37] 2025-11-27 01:44:33,020 | INFO     | right removable region: 1142
[2025-11-26 20:45:37] 2025-11-27 01:44:33,021 | INFO     | sum of square deviations: 469140354715.8282
[2025-11-26 20:45:37] 2025-11-27 01:44:33,054 | INFO     | sum of deviations: 2104206991146.9802
[2025-11-26 20:45:37] 2025-11-27 01:44:33,054 | INFO     | mean x: 1764172869.2691638
[2025-11-26 20:45:37] 2025-11-27 01:44:33,054 | INFO     | mean y: 2873518.194250871
[2025-11-26 20:45:37] 2025-11-27 01:44:33,054 | INFO     | intersect: -7909864850.596427
[2025-11-26 20:45:37] 2025-11-27 01:44:33,056 | INFO     | chi2: 3.8406286132056184
[2025-11-26 20:45:37] 2025-11-27 01:44:33,056 | INFO     | current chi2=3.8406286132056184 (change=33.81743300184288 %)
[2025-11-26 20:45:37] 2025-11-27 01:44:33,058 | INFO     | sum of square deviations: 463036915655.4013
[2025-11-26 20:45:37] 2025-11-27 01:44:33,100 | INFO     | sum of deviations: 2004882036966.7573
[2025-11-26 20:45:37] 2025-11-27 01:44:33,100 | INFO     | mean x: 1764173021.7716537
[2025-11-26 20:45:37] 2025-11-27 01:44:33,101 | INFO     | mean y: 2875999.61592301
[2025-11-26 20:45:37] 2025-11-27 01:44:33,101 | INFO     | intersect: -7635734836.509306
[2025-11-26 20:45:37] 2025-11-27 01:44:33,102 | INFO     | chi2: 3.7334483075688896
[2025-11-26 20:45:37] 2025-11-27 01:44:33,103 | INFO     | current chi2=3.7334483075688896 (change=2.7906969517489943 %)
[2025-11-26 20:45:37] 2025-11-27 01:44:33,103 | INFO     | left removable region: 20
[2025-11-26 20:45:37] 2025-11-27 01:44:33,104 | INFO     | sum of square deviations: 437981823072.3492
[2025-11-26 20:45:37] 2025-11-27 01:44:33,147 | INFO     | sum of deviations: 2314595240220.7524
[2025-11-26 20:45:37] 2025-11-27 01:44:33,147 | INFO     | mean x: 1764172991.2762923
[2025-11-26 20:45:37] 2025-11-27 01:44:33,147 | INFO     | mean y: 2891168.5169340465
[2025-11-26 20:45:37] 2025-11-27 01:44:33,147 | INFO     | intersect: -9320204433.693926
[2025-11-26 20:45:37] 2025-11-27 01:44:33,149 | INFO     | chi2: 0.22902053935717287
[2025-11-26 20:45:37] 2025-11-27 01:44:33,149 | INFO     | current memory leak: 5.28 B/s (using 1122 data points, chi2=0.23)
[2025-11-26 20:45:37] 2025-11-27 01:44:33,150 | INFO     | could have reported an average CPU frequency of 2570 MHz (42 samples)
[2025-11-26 20:45:37] 2025-11-27 01:44:33,151 | INFO     | ..............................
[2025-11-26 20:45:37] 2025-11-27 01:44:33,151 | INFO     | . Timing measurements:
[2025-11-26 20:45:37] 2025-11-27 01:44:33,151 | INFO     | . get job = 0 s
[2025-11-26 20:45:37] 2025-11-27 01:44:33,151 | INFO     | . initial setup = 1 s
[2025-11-26 20:45:37] 2025-11-27 01:44:33,151 | INFO     | . payload setup = 6 s
[2025-11-26 20:45:37] 2025-11-27 01:44:33,152 | INFO     | . stage-in = 0 s
[2025-11-26 20:45:37] 2025-11-27 01:44:33,152 | INFO     | . payload execution = 70281 s
[2025-11-26 20:45:37] 2025-11-27 01:44:33,152 | INFO     | . stage-out = 3 s
[2025-11-26 20:45:37] 2025-11-27 01:44:33,152 | INFO     | . log creation = 0 s
[2025-11-26 20:45:37] 2025-11-27 01:44:33,152 | INFO     | ..............................
[2025-11-26 20:45:37] 2025-11-27 01:44:33,292 | INFO     | 
[2025-11-26 20:45:37] 2025-11-27 01:44:33,292 | INFO     | job summary report
[2025-11-26 20:45:37] 2025-11-27 01:44:33,292 | INFO     | --------------------------------------------------
[2025-11-26 20:45:37] 2025-11-27 01:44:33,292 | INFO     | PanDA job id: 6891567927
[2025-11-26 20:45:37] 2025-11-27 01:44:33,293 | INFO     | task id: 47493068
[2025-11-26 20:45:37] 2025-11-27 01:44:33,293 | INFO     | errors: (none)
[2025-11-26 20:45:37] 2025-11-27 01:44:33,293 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:45:37] 2025-11-27 01:44:33,293 | INFO     | pilot state: finished 
[2025-11-26 20:45:37] 2025-11-27 01:44:33,293 | INFO     | transexitcode: 0
[2025-11-26 20:45:37] 2025-11-27 01:44:33,293 | INFO     | exeerrorcode: 0
[2025-11-26 20:45:37] 2025-11-27 01:44:33,293 | INFO     | exeerrordiag: 
[2025-11-26 20:45:37] 2025-11-27 01:44:33,293 | INFO     | exitcode: 0
[2025-11-26 20:45:37] 2025-11-27 01:44:33,293 | INFO     | exitmsg: OK
[2025-11-26 20:45:37] 2025-11-27 01:44:33,294 | INFO     | cpuconsumptiontime: 542289 s
[2025-11-26 20:45:37] 2025-11-27 01:44:33,294 | INFO     | nevents: 1000
[2025-11-26 20:45:37] 2025-11-27 01:44:33,294 | INFO     | neventsw: 0
[2025-11-26 20:45:37] 2025-11-27 01:44:33,294 | INFO     | pid: 16820
[2025-11-26 20:45:37] 2025-11-27 01:44:33,294 | INFO     | pgrp: 16820
[2025-11-26 20:45:37] 2025-11-27 01:44:33,294 | INFO     | corecount: 8
[2025-11-26 20:45:37] 2025-11-27 01:44:33,294 | INFO     | event service: False
[2025-11-26 20:45:37] 2025-11-27 01:44:33,294 | INFO     | sizes: {0: 2284133, 1: 2284332, 5: 2284594, 11: 2284650, 70291: 2341321, 70292: 2341320, 70295: 2350498, 70298: 2350554, 70303: 2350800}
[2025-11-26 20:45:37] 2025-11-27 01:44:33,294 | INFO     | --------------------------------------------------
[2025-11-26 20:45:37] 2025-11-27 01:44:33,294 | INFO     | 
[2025-11-26 20:45:37] 2025-11-27 01:44:33,295 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 20:45:37] 2025-11-27 01:44:33,314 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,314 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,315 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,315 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,315 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,315 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,315 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,315 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,316 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,316 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,316 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,316 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,316 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,317 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,317 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,317 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,317 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:45:37] 2025-11-27 01:44:33,318 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,318 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:45:37] 2025-11-27 01:44:33,318 | INFO     | job 6891567927 has completed (purged errors)
[2025-11-26 20:45:37] 2025-11-27 01:44:33,318 | INFO     | overall cleanup function is called
[2025-11-26 20:45:37] 2025-11-27 01:44:34,333 | INFO     | --- collectZombieJob: --- 10, [16820]
[2025-11-26 20:45:37] 2025-11-27 01:44:34,333 | INFO     | zombie collector waiting for pid 16820
[2025-11-26 20:45:37] 2025-11-27 01:44:34,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:45:37] 2025-11-27 01:44:34,333 | INFO     | collected zombie processes
[2025-11-26 20:45:37] 2025-11-27 01:44:34,334 | INFO     | will attempt to kill all subprocesses of pid=16820
[2025-11-26 20:45:37] 2025-11-27 01:44:34,446 | INFO     | process IDs to be killed: [16820] (in reverse order)
[2025-11-26 20:45:37] 2025-11-27 01:44:34,501 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:45:37] 2025-11-27 01:44:34,501 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:45:37] 2025-11-27 01:44:34,504 | INFO     | did not find any defunct processes belonging to 16820
[2025-11-26 20:45:37] 2025-11-27 01:44:34,507 | INFO     | did not find any defunct processes belonging to 16820
[2025-11-26 20:45:37] 2025-11-27 01:44:34,508 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:45:37] 2025-11-27 01:44:34,509 | INFO     | ready for new job
[2025-11-26 20:45:37] 2025-11-27 01:44:34,509 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:45:37] 2025-11-27 01:44:34,513 | INFO     | ***************************************
[2025-11-26 20:45:37] 2025-11-27 01:44:34,513 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:45:37] 2025-11-27 01:44:34,513 | INFO     | ***************************************
[2025-11-26 20:45:37] 2025-11-27 01:44:34,513 | INFO     | 
[2025-11-26 20:45:37] 2025-11-27 01:44:34,514 | INFO     | architecture information:
[2025-11-26 20:45:37] 2025-11-27 01:44:34,515 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:45:37] 2025-11-27 01:44:34,526 | INFO     | cat /etc/os-release:
[2025-11-26 20:45:37] NAME="CentOS Linux"
[2025-11-26 20:45:37] VERSION="7 (Core)"
[2025-11-26 20:45:37] ID="centos"
[2025-11-26 20:45:37] ID_LIKE="rhel fedora"
[2025-11-26 20:45:37] VERSION_ID="7"
[2025-11-26 20:45:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:45:37] ANSI_COLOR="0;31"
[2025-11-26 20:45:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:45:37] HOME_URL="https://www.centos.org/"
[2025-11-26 20:45:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:45:37] 
[2025-11-26 20:45:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:45:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:45:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:45:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:45:37] 
[2025-11-26 20:45:37] 2025-11-27 01:44:34,526 | INFO     | ***************************************
[2025-11-26 20:45:37] 2025-11-27 01:44:35,029 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 20:45:37] 2025-11-27 01:44:35,041 | INFO     | sufficient remaining disk space (25198329856 B)
[2025-11-26 20:45:37] 2025-11-27 01:44:35,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:45:37] 2025-11-27 01:44:35,041 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:45:37] 2025-11-27 01:44:35,041 | INFO     | update_server=False
[2025-11-26 20:45:37] 2025-11-27 01:44:35,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:45:37] 2025-11-27 01:44:35,042 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:45:37] 2025-11-27 01:44:35,042 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:45:37] 2025-11-27 01:44:35,125 | INFO     | all data control threads have been joined
[2025-11-26 20:45:37] 2025-11-27 01:44:35,225 | INFO     | all payload control threads have been joined
[2025-11-26 20:45:37] 2025-11-27 01:44:35,457 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 20:45:37] 2025-11-27 01:44:35,458 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 20:45:37] 2025-11-27 01:44:35,458 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:45:37] 2025-11-27 01:44:35,458 | INFO     | will abort loop
[2025-11-26 20:45:37] 2025-11-27 01:44:35,491 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:45:37] 2025-11-27 01:44:36,047 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:36,048 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:36,128 | INFO     | [data] control thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:36,230 | INFO     | [payload] control thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:36,338 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:36,463 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:36,536 | INFO     | all job control threads have been joined
[2025-11-26 20:45:37] 2025-11-27 01:44:36,541 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:36,689 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:36,844 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:37,191 | INFO     | [job] validate thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:37,301 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:37,491 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:37,523 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:37,529 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:37,541 | INFO     | [job] control thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:44:39,048 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:45:37] 2025-11-27 01:45:04,591 | INFO     | PID=30015 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 20:45:37] 2025-11-27 01:45:04,591 | INFO     | .. there are 3 such processes running
[2025-11-26 20:45:37] 2025-11-27 01:45:04,592 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:45:37] 2025-11-27 01:45:04,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:45:37] 2025-11-27 01:45:04,592 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:45:37] 2025-11-27 01:45:30,365 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:45:37] 2025-11-27 01:45:32,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140375732762432)>', '<ExcThread(monitor, started 140375134025472)>']
[2025-11-26 20:45:37] 2025-11-27 01:45:32,732 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:45:37] 2025-11-27 01:45:32,737 | INFO     | [monitor] control thread has ended
[2025-11-26 20:45:37] 2025-11-27 01:45:37,090 | INFO     | all workflow threads have been joined
[2025-11-26 20:45:37] 2025-11-27 01:45:37,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:45:37] 2025-11-27 01:45:37,092 | INFO     | traces error code: 0
[2025-11-26 20:45:37] 2025-11-27 01:45:37,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:45:37] 2025-11-27 01:45:37,178 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:45:37] 2025-11-27 01:45:37,180 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:45:37] 2025-11-27 01:45:37,183 [wrapper] pilotpid: 30015
[2025-11-26 20:45:37] 2025-11-27 01:45:37,185 [wrapper] Pilot exit status: 0
[2025-11-26 20:45:37] 2025-11-27 01:45:37,193 [wrapper] pandaids: 6891567927 6891567927
[2025-11-26 20:45:37] 2025-11-27 01:45:37,224 [wrapper] cleanup supervisor_pilot 25825 30017
[2025-11-26 20:45:37] 2025-11-27 01:45:37,227 [wrapper] Test setup, not cleaning
[2025-11-26 20:45:37] 2025-11-27 01:45:37,229 [wrapper] apfmon messages muted
[2025-11-26 20:45:37] 2025-11-27 01:45:37,231 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:45:37] 2025-11-27 01:45:37,234 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:45:37]  *** Error codes and diagnostics ***
[2025-11-26 20:45:37]     "exeErrorCode": 0,
[2025-11-26 20:45:37]     "exeErrorDiag": "",
[2025-11-26 20:45:37]     "pilotErrorCode": 0,
[2025-11-26 20:45:37]     "pilotErrorDiag": "",
[2025-11-26 20:45:37]  *** Listing of results directory ***
[2025-11-26 20:45:37] total 1727440
[2025-11-26 20:45:37] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 10:32 queuedata.json
[2025-11-26 20:45:37] -rwx------ 1 boincer umatlas     36292 Nov 18 10:33 runpilot2-wrapper.sh
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas       100 Nov 26 00:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:45:37] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 00:26 run_atlas
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas       105 Nov 26 00:26 job.xml
[2025-11-26 20:45:37] -rw-r--r-- 3 boincer umatlas 411579093 Nov 26 00:26 EVNT.47493065._000179.pool.root.1
[2025-11-26 20:45:37] -rw-r--r-- 3 boincer umatlas 411579093 Nov 26 00:26 ATLAS.root_0
[2025-11-26 20:45:37] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 00:26 start_atlas.sh
[2025-11-26 20:45:37] drwxrwx--x 2 boincer umatlas      4096 Nov 26 00:26 shared
[2025-11-26 20:45:37] -rw-r--r-- 2 boincer umatlas    590100 Nov 26 00:26 input.tar.gz
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas         0 Nov 26 00:26 boinc_lockfile
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas      2773 Nov 26 01:12 pandaJob.out
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas    991877 Nov 26 01:12 agis_schedconf.cvmfs.json
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas       532 Nov 26 20:35 boinc_task_state.xml
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas      5953 Nov 26 20:40 init_data.xml
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas 917651047 Nov 26 20:43 HITS.47493068._001790.pool.root.1
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas      1064 Nov 26 20:44 memory_monitor_summary.json
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas   1516240 Nov 26 20:44 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas   2321351 Nov 26 20:44 log.47493068._001790.job.log.tgz.1
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas      8673 Nov 26 20:44 heartbeat.json
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas        96 Nov 26 20:45 pilot_heartbeat.json
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas        29 Nov 26 20:45 wrapper_checkpoint.txt
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 20:45 boinc_mmap_file
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas      5007 Nov 26 20:45 pilotlog.txt
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas   9758521 Nov 26 20:45 log.47493068._001790.job.log.1
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas       353 Nov 26 20:45 output.list
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas       620 Nov 26 20:45 runtime_log
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas  12103680 Nov 26 20:45 result.tar.gz
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas       792 Nov 26 20:45 weeLDmXtcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBKFKDmXCw5Lo.diag
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas      8784 Nov 26 20:45 runtime_log.err
[2025-11-26 20:45:37] -rw-r--r-- 1 boincer umatlas     23497 Nov 26 20:45 stderr.txt
[2025-11-26 20:45:37] HITS file was successfully produced:
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas 917651047 Nov 26 20:43 shared/HITS.pool.root.1
[2025-11-26 20:45:37]  *** Contents of shared directory: ***
[2025-11-26 20:45:37] total 1310504
[2025-11-26 20:45:37] -rw-r--r-- 3 boincer umatlas 411579093 Nov 26 00:26 ATLAS.root_0
[2025-11-26 20:45:37] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 00:26 start_atlas.sh
[2025-11-26 20:45:37] -rw-r--r-- 2 boincer umatlas    590100 Nov 26 00:26 input.tar.gz
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas 917651047 Nov 26 20:43 HITS.pool.root.1
[2025-11-26 20:45:37] -rw------- 1 boincer umatlas  12103680 Nov 26 20:45 result.tar.gz
20:45:38 (18923): run_atlas exited; CPU time 540895.048862
20:45:38 (18923): called boinc_finish(0)

</stderr_txt>
]]>

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