Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:27:33 (2835595): wrapper (7.7.26015): starting
00:27:33 (2835595): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:27:33] Arguments: --nthreads 9
[2025-11-26 00:27:33] Threads: 9
[2025-11-26 00:27:33] Checking for CVMFS
[2025-11-26 00:27:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:27:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:27:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:27:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:27:34] 2.13.3.0 11771 29583 223748 153311 2 195 30021758 32935936 42274 16776704 0 210555433 99.600 217735330 38346 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:27:34] CVMFS is ok
[2025-11-26 00:27:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:27:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:27:34] Further information can be found at the LHC@home message board.
[2025-11-26 00:27:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:27:34] Checking for apptainer binary...
[2025-11-26 00:27:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:27:34] Running /usr/bin/apptainer --version
[2025-11-26 00:27:34] apptainer version 1.4.4-1.el9
[2025-11-26 00:27:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:27:34] c7-2-14.aglt2.org
[2025-11-26 00:27:34] apptainer works
[2025-11-26 00:27:34] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:27:34] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:27:34] Starting ATLAS job with PandaID=6896044039
[2025-11-26 00:27:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:01:03]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:01:03] 2025-11-26 20:00:24,369 | INFO     | job 6896044039 has state=finished
[2025-11-26 15:01:03] 2025-11-26 20:00:24,369 | INFO     | preparing for final server update for job 6896044039 in state='finished'
[2025-11-26 15:01:03] 2025-11-26 20:00:24,369 | INFO     | this job has now completed (state=finished)
[2025-11-26 15:01:03] 2025-11-26 20:00:24,369 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 15:01:03] 2025-11-26 20:00:24,369 | INFO     | log transfer has been attempted: DONE
[2025-11-26 15:01:03] 2025-11-26 20:00:24,370 | INFO     | job 6896044039 has finished - writing final server update
[2025-11-26 15:01:03] 2025-11-26 20:00:24,370 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 15:01:03] 2025-11-26 20:00:24,373 | INFO     | executing command: lscpu
[2025-11-26 15:01:03] 2025-11-26 20:00:24,435 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 15:01:03] 2025-11-26 20:00:24,827 | INFO     | time since job start (52331s) is within the limit (172800.0s)
[2025-11-26 15:01:03] 2025-11-26 20:00:25,419 | INFO     | monitor loop #2938: job 0:6896044039 is in state 'finished'
[2025-11-26 15:01:03] 2025-11-26 20:00:25,419 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:01:03] 2025-11-26 20:00:26,833 | INFO     | time since job start (52333s) is within the limit (172800.0s)
[2025-11-26 15:01:03] 2025-11-26 20:00:27,930 | INFO     | monitor loop #2939: job 0:6896044039 is in state 'finished'
[2025-11-26 15:01:03] 2025-11-26 20:00:27,930 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:01:03] 2025-11-26 20:00:28,840 | INFO     | time since job start (52335s) is within the limit (172800.0s)
[2025-11-26 15:01:03] 2025-11-26 20:00:30,102 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 15:01:03] 2025-11-26 20:00:30,108 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3255.6749895833345
[2025-11-26 15:01:03] 2025-11-26 20:00:30,122 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896044039/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:01:03] 2025-11-26 20:00:30,122 | INFO     | extracted standard info from prmon json
[2025-11-26 15:01:03] 2025-11-26 20:00:30,122 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:01:03] 2025-11-26 20:00:30,122 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:01:03] 2025-11-26 20:00:30,133 | INFO     | fitting pss+swap vs Time
[2025-11-26 15:01:03] 2025-11-26 20:00:30,134 | INFO     | sum of square deviations: 195157773832.39435
[2025-11-26 15:01:03] 2025-11-26 20:00:30,148 | INFO     | sum of deviations: 33234307269290.746
[2025-11-26 15:01:03] 2025-11-26 20:00:30,148 | INFO     | mean x: 1764161087.176196
[2025-11-26 15:01:03] 2025-11-26 20:00:30,148 | INFO     | mean y: 5569776.19369895
[2025-11-26 15:01:03] 2025-11-26 20:00:30,148 | INFO     | intersect: -300421466730.65326
[2025-11-26 15:01:03] 2025-11-26 20:00:30,149 | INFO     | chi2: 94.16971012933257
[2025-11-26 15:01:03] 2025-11-26 20:00:30,149 | INFO     | sum of square deviations: 191761868750.4363
[2025-11-26 15:01:03] 2025-11-26 20:00:30,163 | INFO     | sum of deviations: 33806487204344.0
[2025-11-26 15:01:03] 2025-11-26 20:00:30,163 | INFO     | mean x: 1764160934.6830986
[2025-11-26 15:01:03] 2025-11-26 20:00:30,163 | INFO     | mean y: 5595449.974178404
[2025-11-26 15:01:03] 2025-11-26 20:00:30,164 | INFO     | intersect: -311005579260.59784
[2025-11-26 15:01:03] 2025-11-26 20:00:30,164 | INFO     | chi2: 104.96193154230376
[2025-11-26 15:01:03] 2025-11-26 20:00:30,164 | INFO     | current chi2=104.96193154230376 (change=-11.46039570276808 %)
[2025-11-26 15:01:03] 2025-11-26 20:00:30,164 | INFO     | right removable region: 851
[2025-11-26 15:01:03] 2025-11-26 20:00:30,165 | INFO     | sum of square deviations: 191761253870.43665
[2025-11-26 15:01:03] 2025-11-26 20:00:30,178 | INFO     | sum of deviations: 32561988526170.953
[2025-11-26 15:01:03] 2025-11-26 20:00:30,178 | INFO     | mean x: 1764161239.6830986
[2025-11-26 15:01:03] 2025-11-26 20:00:30,179 | INFO     | mean y: 5599957.981220657
[2025-11-26 15:01:03] 2025-11-26 20:00:30,179 | INFO     | intersect: -299557512430.1396
[2025-11-26 15:01:03] 2025-11-26 20:00:30,179 | INFO     | chi2: 89.51042390424436
[2025-11-26 15:01:03] 2025-11-26 20:00:30,179 | INFO     | current chi2=89.51042390424436 (change=4.947754664094379 %)
[2025-11-26 15:01:03] 2025-11-26 20:00:30,179 | INFO     | left removable region: 10
[2025-11-26 15:01:03] 2025-11-26 20:00:30,180 | INFO     | sum of square deviations: 184429121744.179
[2025-11-26 15:01:03] 2025-11-26 20:00:30,193 | INFO     | sum of deviations: 32640045381386.133
[2025-11-26 15:01:03] 2025-11-26 20:00:30,194 | INFO     | mean x: 1764161209.1914387
[2025-11-26 15:01:03] 2025-11-26 20:00:30,194 | INFO     | mean y: 5648131.272294887
[2025-11-26 15:01:03] 2025-11-26 20:00:30,194 | INFO     | intersect: -312213492661.26373
[2025-11-26 15:01:03] 2025-11-26 20:00:30,194 | INFO     | chi2: 100.3721759704564
[2025-11-26 15:01:03] 2025-11-26 20:00:30,195 | INFO     | current memory leak: 176.98 B/s (using 841 data points, chi2=100.37)
[2025-11-26 15:01:03] 2025-11-26 20:00:30,195 | INFO     | could have reported an average CPU frequency of 3237 MHz (32 samples)
[2025-11-26 15:01:03] 2025-11-26 20:00:30,196 | INFO     | ..............................
[2025-11-26 15:01:03] 2025-11-26 20:00:30,196 | INFO     | . Timing measurements:
[2025-11-26 15:01:03] 2025-11-26 20:00:30,196 | INFO     | . get job = 0 s
[2025-11-26 15:01:03] 2025-11-26 20:00:30,196 | INFO     | . initial setup = 5 s
[2025-11-26 15:01:03] 2025-11-26 20:00:30,196 | INFO     | . payload setup = 31 s
[2025-11-26 15:01:03] 2025-11-26 20:00:30,196 | INFO     | . stage-in = 0 s
[2025-11-26 15:01:03] 2025-11-26 20:00:30,196 | INFO     | . payload execution = 52250 s
[2025-11-26 15:01:03] 2025-11-26 20:00:30,196 | INFO     | . stage-out = 3 s
[2025-11-26 15:01:03] 2025-11-26 20:00:30,196 | INFO     | . log creation = 0 s
[2025-11-26 15:01:03] 2025-11-26 20:00:30,196 | INFO     | ..............................
[2025-11-26 15:01:03] 2025-11-26 20:00:30,692 | INFO     | 
[2025-11-26 15:01:03] 2025-11-26 20:00:30,692 | INFO     | job summary report
[2025-11-26 15:01:03] 2025-11-26 20:00:30,692 | INFO     | --------------------------------------------------
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | PanDA job id: 6896044039
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | task id: 47556173
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | errors: (none)
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | pilot state: finished 
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | transexitcode: 0
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | exeerrorcode: 0
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | exeerrordiag: 
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | exitcode: 0
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | exitmsg: OK
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | cpuconsumptiontime: 194815 s
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | nevents: 1000
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | neventsw: 0
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | pid: 2847912
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | pgrp: 2847912
[2025-11-26 15:01:03] 2025-11-26 20:00:30,693 | INFO     | corecount: 9
[2025-11-26 15:01:03] 2025-11-26 20:00:30,694 | INFO     | event service: False
[2025-11-26 15:01:03] 2025-11-26 20:00:30,694 | INFO     | sizes: {0: 2283482, 1: 2284167, 2: 2284366, 13: 2284366, 17: 2284684, 23: 2284712, 52286: 2333497, 52290: 2342491, 52293: 2342547, 52300: 2342793}
[2025-11-26 15:01:03] 2025-11-26 20:00:30,694 | INFO     | --------------------------------------------------
[2025-11-26 15:01:03] 2025-11-26 20:00:30,694 | INFO     | 
[2025-11-26 15:01:03] 2025-11-26 20:00:30,694 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 15:01:03] 2025-11-26 20:00:30,711 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,711 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,711 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,711 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,712 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,712 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,712 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,714 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,714 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,714 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,714 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,714 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,714 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,715 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:01:03] 2025-11-26 20:00:30,715 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,715 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:01:03] 2025-11-26 20:00:30,715 | INFO     | job 6896044039 has completed (purged errors)
[2025-11-26 15:01:03] 2025-11-26 20:00:30,715 | INFO     | overall cleanup function is called
[2025-11-26 15:01:03] 2025-11-26 20:00:31,731 | INFO     | --- collectZombieJob: --- 10, [2847912]
[2025-11-26 15:01:03] 2025-11-26 20:00:31,732 | INFO     | zombie collector waiting for pid 2847912
[2025-11-26 15:01:03] 2025-11-26 20:00:31,732 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:01:03] 2025-11-26 20:00:31,732 | INFO     | collected zombie processes
[2025-11-26 15:01:03] 2025-11-26 20:00:31,732 | INFO     | will attempt to kill all subprocesses of pid=2847912
[2025-11-26 15:01:03] 2025-11-26 20:00:32,433 | INFO     | process IDs to be killed: [2847912] (in reverse order)
[2025-11-26 15:01:03] 2025-11-26 20:00:32,627 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:01:03] 2025-11-26 20:00:32,627 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:01:03] 2025-11-26 20:00:32,663 | INFO     | did not find any defunct processes belonging to 2847912
[2025-11-26 15:01:03] 2025-11-26 20:00:32,686 | INFO     | did not find any defunct processes belonging to 2847912
[2025-11-26 15:01:03] 2025-11-26 20:00:32,687 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:01:03] 2025-11-26 20:00:32,687 | INFO     | ready for new job
[2025-11-26 15:01:03] 2025-11-26 20:00:32,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:01:03] 2025-11-26 20:00:32,696 | INFO     | ***************************************
[2025-11-26 15:01:03] 2025-11-26 20:00:32,696 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:01:03] 2025-11-26 20:00:32,696 | INFO     | ***************************************
[2025-11-26 15:01:03] 2025-11-26 20:00:32,696 | INFO     | 
[2025-11-26 15:01:03] 2025-11-26 20:00:32,701 | INFO     | architecture information:
[2025-11-26 15:01:03] 2025-11-26 20:00:32,701 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:01:03] 2025-11-26 20:00:32,713 | INFO     | cat /etc/os-release:
[2025-11-26 15:01:03] NAME="CentOS Linux"
[2025-11-26 15:01:03] VERSION="7 (Core)"
[2025-11-26 15:01:03] ID="centos"
[2025-11-26 15:01:03] ID_LIKE="rhel fedora"
[2025-11-26 15:01:03] VERSION_ID="7"
[2025-11-26 15:01:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:01:03] ANSI_COLOR="0;31"
[2025-11-26 15:01:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:01:03] HOME_URL="https://www.centos.org/"
[2025-11-26 15:01:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:01:03] 
[2025-11-26 15:01:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:01:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:01:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:01:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:01:03] 
[2025-11-26 15:01:03] 2025-11-26 20:00:32,714 | INFO     | ***************************************
[2025-11-26 15:01:03] 2025-11-26 20:00:33,217 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 15:01:03] 2025-11-26 20:00:33,238 | INFO     | sufficient remaining disk space (68182605824 B)
[2025-11-26 15:01:03] 2025-11-26 20:00:33,238 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:01:03] 2025-11-26 20:00:33,238 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:01:03] 2025-11-26 20:00:33,238 | INFO     | update_server=False
[2025-11-26 15:01:03] 2025-11-26 20:00:33,238 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:01:03] 2025-11-26 20:00:33,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:01:03] 2025-11-26 20:00:33,490 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:01:03] 2025-11-26 20:00:33,566 | INFO     | all payload control threads have been joined
[2025-11-26 15:01:03] 2025-11-26 20:00:33,617 | INFO     | all data control threads have been joined
[2025-11-26 15:01:03] 2025-11-26 20:00:33,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:01:03] 2025-11-26 20:00:33,946 | INFO     | aborting loop
[2025-11-26 15:01:03] 2025-11-26 20:00:34,244 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:34,457 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:34,495 | INFO     | all job control threads have been joined
[2025-11-26 15:01:03] 2025-11-26 20:00:34,572 | INFO     | [payload] control thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:34,625 | INFO     | [data] control thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:34,682 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:34,864 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:34,952 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:35,099 | INFO     | [job] validate thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:35,247 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:35,291 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:01:03] 2025-11-26 20:00:35,292 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:35,501 | INFO     | [job] control thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:35,547 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:35,606 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:35,689 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:36,299 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:37,500 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:01:03] 2025-11-26 20:00:45,815 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:01:03] 2025-11-26 20:00:46,873 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140084390188864)>', '<ExcThread(monitor, started 140083906733824)>']
[2025-11-26 15:01:03] 2025-11-26 20:00:51,899 | INFO     | all workflow threads have been joined
[2025-11-26 15:01:03] 2025-11-26 20:00:51,900 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:01:03] 2025-11-26 20:00:51,905 | INFO     | traces error code: 0
[2025-11-26 15:01:03] 2025-11-26 20:00:51,905 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:01:03] 2025-11-26 20:01:02,688 | INFO     | PID=2839854 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:01:03] 2025-11-26 20:01:02,689 | INFO     | .. there are 60 such processes running
[2025-11-26 15:01:03] 2025-11-26 20:01:02,689 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:01:03] 2025-11-26 20:01:02,689 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:01:03] 2025-11-26 20:01:02,690 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:01:03] 2025-11-26 20:01:02,690 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:01:03] 2025-11-26 20:01:02,690 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 15:01:03] 2025-11-26 20:01:02,690 | INFO     | [monitor] control thread has ended
[2025-11-26 15:01:03] 2025-11-26 20:01:02,874 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:01:03] 2025-11-26 20:01:02,878 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:01:03] 2025-11-26 20:01:02,881 [wrapper] pilotpid: 2839854
[2025-11-26 15:01:03] 2025-11-26 20:01:02,883 [wrapper] Pilot exit status: 0
[2025-11-26 15:01:03] 2025-11-26 20:01:02,896 [wrapper] pandaids: 6896044039
[2025-11-26 15:01:03] 2025-11-26 20:01:03,029 [wrapper] cleanup supervisor_pilot 4176383 2839855
[2025-11-26 15:01:03] 2025-11-26 20:01:03,032 [wrapper] Test setup, not cleaning
[2025-11-26 15:01:03] 2025-11-26 20:01:03,038 [wrapper] apfmon messages muted
[2025-11-26 15:01:03] 2025-11-26 20:01:03,041 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:01:03] 2025-11-26 20:01:03,043 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:01:03]  *** Error codes and diagnostics ***
[2025-11-26 15:01:03]     "exeErrorCode": 0,
[2025-11-26 15:01:03]     "exeErrorDiag": "",
[2025-11-26 15:01:03]     "pilotErrorCode": 0,
[2025-11-26 15:01:03]     "pilotErrorDiag": "",
[2025-11-26 15:01:03]  *** Listing of results directory ***
[2025-11-26 15:01:03] total 1326180
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-26 15:01:03] -rwx------. 1 boincer umatlas     36292 Nov 24 12:47 runpilot2-wrapper.sh
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 12:47 queuedata.json
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:01:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:27 run_atlas
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:27 job.xml
[2025-11-26 15:01:03] -rw-r--r--. 2 boincer umatlas 411805055 Nov 26 00:27 EVNT.47483658._003021.pool.root.1
[2025-11-26 15:01:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:27 start_atlas.sh
[2025-11-26 15:01:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:27 shared
[2025-11-26 15:01:03] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 00:27 input.tar.gz
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:27 boinc_lockfile
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 00:27 pandaJob.out
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas        57 Nov 26 00:27 setup.sh.local
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas    991877 Nov 26 00:28 agis_schedconf.cvmfs.json
[2025-11-26 15:01:03] drwx------. 5 boincer umatlas      4096 Nov 26 00:28 pilot3
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas       533 Nov 26 14:52 boinc_task_state.xml
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 14:58 init_data.xml
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas 925341342 Nov 26 14:59 HITS.47556173._000033.pool.root.1
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas      1076 Nov 26 15:00 memory_monitor_summary.json
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas   1516240 Nov 26 15:00 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas   2133066 Nov 26 15:00 log.47556173._000033.job.log.tgz.1
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas      8656 Nov 26 15:00 heartbeat.json
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 15:01 boinc_mmap_file
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas        29 Nov 26 15:01 wrapper_checkpoint.txt
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas        95 Nov 26 15:01 pilot_heartbeat.json
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas       893 Nov 26 15:01 pilotlog.txt
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas   6340207 Nov 26 15:01 log.47556173._000033.job.log.1
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas       353 Nov 26 15:01 output.list
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas       620 Nov 26 15:01 runtime_log
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas   8488960 Nov 26 15:01 result.tar.gz
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 15:01 runtime_log.err
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas       665 Nov 26 15:01 cMzKDmGqph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIpLKDmzUpTEm.diag
[2025-11-26 15:01:03] -rw-r--r--. 1 boincer umatlas     21724 Nov 26 15:01 stderr.txt
[2025-11-26 15:01:03] HITS file was successfully produced:
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas 925341342 Nov 26 14:59 shared/HITS.pool.root.1
[2025-11-26 15:01:03]  *** Contents of shared directory: ***
[2025-11-26 15:01:03] total 1314708
[2025-11-26 15:01:03] -rw-r--r--. 2 boincer umatlas 411805055 Nov 26 00:27 ATLAS.root_0
[2025-11-26 15:01:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:27 start_atlas.sh
[2025-11-26 15:01:03] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 00:27 input.tar.gz
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas 925341342 Nov 26 14:59 HITS.pool.root.1
[2025-11-26 15:01:03] -rw-------. 1 boincer umatlas   8488960 Nov 26 15:01 result.tar.gz
15:01:04 (2835595): run_atlas exited; CPU time 195988.656552
15:01:04 (2835595): called boinc_finish(0)

</stderr_txt>
]]>

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