Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:14:05 (3388759): wrapper (7.7.26015): starting
00:14:05 (3388759): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:14:05] Arguments: --nthreads 9
[2025-11-26 00:14:05] Threads: 9
[2025-11-26 00:14:05] Checking for CVMFS
[2025-11-26 00:14:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:14:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:14:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:14:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:14:06] 2.13.3.0 11772 29570 241820 153310 2 165 17650981 32935936 46702 16776704 0 159405529 99.494 211751458 39564 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:14:06] CVMFS is ok
[2025-11-26 00:14:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:14:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:14:06] Further information can be found at the LHC@home message board.
[2025-11-26 00:14:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:14:06] Checking for apptainer binary...
[2025-11-26 00:14:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:14:06] Running /usr/bin/apptainer --version
[2025-11-26 00:14:06] apptainer version 1.4.4-1.el9
[2025-11-26 00:14:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:14:06] c7-3-28.aglt2.org
[2025-11-26 00:14:06] apptainer works
[2025-11-26 00:14:06] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:14:06] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:14:06] Starting ATLAS job with PandaID=6896218918
[2025-11-26 00:14:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:01:45]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:01:45] 2025-11-26 23:00:49,268 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,043 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 18:01:45] 2025-11-26 23:00:50,062 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3191.9736562500025
[2025-11-26 18:01:45] 2025-11-26 23:00:50,075 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896218918/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,075 | INFO     | extracted standard info from prmon json
[2025-11-26 18:01:45] 2025-11-26 23:00:50,075 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:01:45] 2025-11-26 23:00:50,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:01:45] 2025-11-26 23:00:50,087 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:01:45] 2025-11-26 23:00:50,088 | INFO     | sum of square deviations: 355892394227.4576
[2025-11-26 18:01:45] 2025-11-26 23:00:50,107 | INFO     | sum of deviations: 2674079256895.188
[2025-11-26 18:01:45] 2025-11-26 23:00:50,107 | INFO     | mean x: 1764166073.8500478
[2025-11-26 18:01:45] 2025-11-26 23:00:50,107 | INFO     | mean y: 3083119.217765043
[2025-11-26 18:01:45] 2025-11-26 23:00:50,107 | INFO     | intersect: -13252383927.33446
[2025-11-26 18:01:45] 2025-11-26 23:00:50,108 | INFO     | chi2: 9.672290481981198
[2025-11-26 18:01:45] 2025-11-26 23:00:50,109 | INFO     | sum of square deviations: 350818235646.32715
[2025-11-26 18:01:45] 2025-11-26 23:00:50,126 | INFO     | sum of deviations: 2976074702251.8496
[2025-11-26 18:01:45] 2025-11-26 23:00:50,126 | INFO     | mean x: 1764165921.3541267
[2025-11-26 18:01:45] 2025-11-26 23:00:50,126 | INFO     | mean y: 3092187.8378119003
[2025-11-26 18:01:45] 2025-11-26 23:00:50,126 | INFO     | intersect: -14962747770.407272
[2025-11-26 18:01:45] 2025-11-26 23:00:50,127 | INFO     | chi2: 7.405059420124244
[2025-11-26 18:01:45] 2025-11-26 23:00:50,127 | INFO     | current chi2=7.405059420124244 (change=23.4404773727655 %)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,127 | INFO     | right removable region: 1041
[2025-11-26 18:01:45] 2025-11-26 23:00:50,128 | INFO     | sum of square deviations: 350817692746.3272
[2025-11-26 18:01:45] 2025-11-26 23:00:50,145 | INFO     | sum of deviations: 2228591291081.896
[2025-11-26 18:01:45] 2025-11-26 23:00:50,145 | INFO     | mean x: 1764166226.3541267
[2025-11-26 18:01:45] 2025-11-26 23:00:50,146 | INFO     | mean y: 3096505.0355086373
[2025-11-26 18:01:45] 2025-11-26 23:00:50,146 | INFO     | intersect: -11203879566.483566
[2025-11-26 18:01:45] 2025-11-26 23:00:50,146 | INFO     | chi2: 5.511872528029293
[2025-11-26 18:01:45] 2025-11-26 23:00:50,146 | INFO     | current chi2=5.511872528029293 (change=43.013782120196595 %)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,147 | INFO     | sum of square deviations: 345791457290.16235
[2025-11-26 18:01:45] 2025-11-26 23:00:50,165 | INFO     | sum of deviations: 1861615060646.0012
[2025-11-26 18:01:45] 2025-11-26 23:00:50,166 | INFO     | mean x: 1764166378.858245
[2025-11-26 18:01:45] 2025-11-26 23:00:50,166 | INFO     | mean y: 3107635.62584378
[2025-11-26 18:01:45] 2025-11-26 23:00:50,166 | INFO     | intersect: -9494520576.779572
[2025-11-26 18:01:45] 2025-11-26 23:00:50,167 | INFO     | chi2: 2.7786121122271776
[2025-11-26 18:01:45] 2025-11-26 23:00:50,167 | INFO     | current chi2=2.7786121122271776 (change=49.58859991595925 %)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,167 | INFO     | sum of square deviations: 340813581811.90704
[2025-11-26 18:01:45] 2025-11-26 23:00:50,184 | INFO     | sum of deviations: 1739185665891.6057
[2025-11-26 18:01:45] 2025-11-26 23:00:50,185 | INFO     | mean x: 1764166531.360465
[2025-11-26 18:01:45] 2025-11-26 23:00:50,185 | INFO     | mean y: 3111382.406976744
[2025-11-26 18:01:45] 2025-11-26 23:00:50,185 | INFO     | intersect: -8999502677.971529
[2025-11-26 18:01:45] 2025-11-26 23:00:50,185 | INFO     | chi2: 2.480244611463657
[2025-11-26 18:01:45] 2025-11-26 23:00:50,186 | INFO     | current chi2=2.480244611463657 (change=10.738004756063855 %)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,186 | INFO     | left removable region: 30
[2025-11-26 18:01:45] 2025-11-26 23:00:50,186 | INFO     | sum of square deviations: 320428714410.97296
[2025-11-26 18:01:45] 2025-11-26 23:00:50,202 | INFO     | sum of deviations: 1861711712441.016
[2025-11-26 18:01:45] 2025-11-26 23:00:50,203 | INFO     | mean x: 1764166805.866469
[2025-11-26 18:01:45] 2025-11-26 23:00:50,203 | INFO     | mean y: 3126452.755687438
[2025-11-26 18:01:45] 2025-11-26 23:00:50,203 | INFO     | intersect: -10246797656.632399
[2025-11-26 18:01:45] 2025-11-26 23:00:50,204 | INFO     | chi2: 0.07802691181852457
[2025-11-26 18:01:45] 2025-11-26 23:00:50,204 | INFO     | current memory leak: 5.81 B/s (using 1011 data points, chi2=0.08)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,205 | INFO     | could have reported an average CPU frequency of 3202 MHz (39 samples)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,205 | INFO     | ..............................
[2025-11-26 18:01:45] 2025-11-26 23:00:50,205 | INFO     | . Timing measurements:
[2025-11-26 18:01:45] 2025-11-26 23:00:50,205 | INFO     | . get job = 0 s
[2025-11-26 18:01:45] 2025-11-26 23:00:50,205 | INFO     | . initial setup = 4 s
[2025-11-26 18:01:45] 2025-11-26 23:00:50,205 | INFO     | . payload setup = 21 s
[2025-11-26 18:01:45] 2025-11-26 23:00:50,205 | INFO     | . stage-in = 0 s
[2025-11-26 18:01:45] 2025-11-26 23:00:50,205 | INFO     | . payload execution = 63880 s
[2025-11-26 18:01:45] 2025-11-26 23:00:50,205 | INFO     | . stage-out = 3 s
[2025-11-26 18:01:45] 2025-11-26 23:00:50,205 | INFO     | . log creation = 0 s
[2025-11-26 18:01:45] 2025-11-26 23:00:50,205 | INFO     | ..............................
[2025-11-26 18:01:45] 2025-11-26 23:00:50,275 | INFO     | 
[2025-11-26 18:01:45] 2025-11-26 23:00:50,275 | INFO     | job summary report
[2025-11-26 18:01:45] 2025-11-26 23:00:50,275 | INFO     | --------------------------------------------------
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | PanDA job id: 6896218918
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | task id: 47556149
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | errors: (none)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | pilot state: finished 
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | transexitcode: 0
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | exeerrorcode: 0
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | exeerrordiag: 
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | exitcode: 0
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | exitmsg: OK
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | cpuconsumptiontime: 202365 s
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | nevents: 1000
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | neventsw: 0
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | pid: 3428925
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | pgrp: 3428925
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | corecount: 9
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | event service: False
[2025-11-26 18:01:45] 2025-11-26 23:00:50,276 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 17: 2284633, 23: 2284661, 63906: 2339104, 63910: 2348098, 63913: 2348154, 63922: 2348400}
[2025-11-26 18:01:45] 2025-11-26 23:00:50,277 | INFO     | --------------------------------------------------
[2025-11-26 18:01:45] 2025-11-26 23:00:50,277 | INFO     | 
[2025-11-26 18:01:45] 2025-11-26 23:00:50,277 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 18:01:45] 2025-11-26 23:00:50,283 | INFO     | time since job start (63965s) is within the limit (172800.0s)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,293 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,294 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,294 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,294 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,294 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,294 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:01:45] 2025-11-26 23:00:50,294 | INFO     | job 6896218918 has completed (purged errors)
[2025-11-26 18:01:45] 2025-11-26 23:00:50,294 | INFO     | overall cleanup function is called
[2025-11-26 18:01:45] 2025-11-26 23:00:51,309 | INFO     | --- collectZombieJob: --- 10, [3428925]
[2025-11-26 18:01:45] 2025-11-26 23:00:51,309 | INFO     | zombie collector waiting for pid 3428925
[2025-11-26 18:01:45] 2025-11-26 23:00:51,309 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:01:45] 2025-11-26 23:00:51,309 | INFO     | collected zombie processes
[2025-11-26 18:01:45] 2025-11-26 23:00:51,309 | INFO     | will attempt to kill all subprocesses of pid=3428925
[2025-11-26 18:01:45] 2025-11-26 23:00:52,682 | INFO     | PID=3398395 has CPU usage=22.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 18:01:45] 2025-11-26 23:00:52,683 | INFO     | .. there are 75 such processes running
[2025-11-26 18:01:45] 2025-11-26 23:00:52,731 | INFO     | process IDs to be killed: [3428925] (in reverse order)
[2025-11-26 18:01:45] 2025-11-26 23:00:52,962 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:01:45] 2025-11-26 23:00:52,963 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:01:45] 2025-11-26 23:00:52,994 | INFO     | did not find any defunct processes belonging to 3428925
[2025-11-26 18:01:45] 2025-11-26 23:00:53,019 | INFO     | did not find any defunct processes belonging to 3428925
[2025-11-26 18:01:45] 2025-11-26 23:00:53,020 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:01:45] 2025-11-26 23:00:53,021 | INFO     | ready for new job
[2025-11-26 18:01:45] 2025-11-26 23:00:53,021 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:01:45] 2025-11-26 23:00:53,025 | INFO     | ***************************************
[2025-11-26 18:01:45] 2025-11-26 23:00:53,025 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:01:45] 2025-11-26 23:00:53,025 | INFO     | ***************************************
[2025-11-26 18:01:45] 2025-11-26 23:00:53,025 | INFO     | 
[2025-11-26 18:01:45] 2025-11-26 23:00:53,029 | INFO     | architecture information:
[2025-11-26 18:01:45] 2025-11-26 23:00:53,030 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:01:45] 2025-11-26 23:00:53,048 | INFO     | cat /etc/os-release:
[2025-11-26 18:01:45] NAME="CentOS Linux"
[2025-11-26 18:01:45] VERSION="7 (Core)"
[2025-11-26 18:01:45] ID="centos"
[2025-11-26 18:01:45] ID_LIKE="rhel fedora"
[2025-11-26 18:01:45] VERSION_ID="7"
[2025-11-26 18:01:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:01:45] ANSI_COLOR="0;31"
[2025-11-26 18:01:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:01:45] HOME_URL="https://www.centos.org/"
[2025-11-26 18:01:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:01:45] 
[2025-11-26 18:01:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:01:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:01:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:01:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:01:45] 
[2025-11-26 18:01:45] 2025-11-26 23:00:53,048 | INFO     | ***************************************
[2025-11-26 18:01:45] 2025-11-26 23:00:53,551 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 18:01:45] 2025-11-26 23:00:53,586 | INFO     | sufficient remaining disk space (66684190720 B)
[2025-11-26 18:01:45] 2025-11-26 23:00:53,586 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:01:45] 2025-11-26 23:00:53,587 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:01:45] 2025-11-26 23:00:53,587 | INFO     | update_server=False
[2025-11-26 18:01:45] 2025-11-26 23:00:53,587 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:01:45] 2025-11-26 23:00:53,587 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 18:01:45] 2025-11-26 23:00:53,587 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:01:45] 2025-11-26 23:00:53,587 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:01:45] 2025-11-26 23:00:53,588 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:01:45] 2025-11-26 23:00:53,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:01:45] 2025-11-26 23:00:53,588 | INFO     | aborting loop
[2025-11-26 18:01:45] 2025-11-26 23:00:53,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:01:45] 2025-11-26 23:00:53,691 | INFO     | all data control threads have been joined
[2025-11-26 18:01:45] 2025-11-26 23:00:54,281 | INFO     | all job control threads have been joined
[2025-11-26 18:01:45] 2025-11-26 23:00:54,421 | INFO     | all payload control threads have been joined
[2025-11-26 18:01:45] 2025-11-26 23:00:54,593 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:54,594 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:54,692 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:54,697 | INFO     | [data] control thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:54,719 | INFO     | [job] validate thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:54,808 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:54,895 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:55,175 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:55,279 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:55,286 | INFO     | [job] control thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:55,289 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:01:45] 2025-11-26 23:00:55,427 | INFO     | [payload] control thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:55,637 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:55,819 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:56,069 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:00:56,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:01:45] 2025-11-26 23:00:56,294 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:01:00,286 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:01:45] 2025-11-26 23:01:40,230 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:01:45] 2025-11-26 23:01:40,245 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140529804789568)>', '<ExcThread(monitor, started 140529174046464)>']
[2025-11-26 18:01:45] 2025-11-26 23:01:40,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:01:45] 2025-11-26 23:01:40,869 | INFO     | [monitor] control thread has ended
[2025-11-26 18:01:45] 2025-11-26 23:01:45,276 | INFO     | all workflow threads have been joined
[2025-11-26 18:01:45] 2025-11-26 23:01:45,277 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:01:45] 2025-11-26 23:01:45,277 | INFO     | traces error code: 0
[2025-11-26 18:01:45] 2025-11-26 23:01:45,277 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:01:45] 2025-11-26 23:01:45,409 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:01:45] 2025-11-26 23:01:45,416 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:01:45] 2025-11-26 23:01:45,418 [wrapper] pilotpid: 3398395
[2025-11-26 18:01:45] 2025-11-26 23:01:45,421 [wrapper] Pilot exit status: 0
[2025-11-26 18:01:45] 2025-11-26 23:01:45,443 [wrapper] pandaids: 6896218918
[2025-11-26 18:01:45] 2025-11-26 23:01:45,599 [wrapper] cleanup supervisor_pilot 3068081 3398396
[2025-11-26 18:01:45] 2025-11-26 23:01:45,604 [wrapper] Test setup, not cleaning
[2025-11-26 18:01:45] 2025-11-26 23:01:45,608 [wrapper] apfmon messages muted
[2025-11-26 18:01:45] 2025-11-26 23:01:45,612 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:01:45] 2025-11-26 23:01:45,615 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:01:45]  *** Error codes and diagnostics ***
[2025-11-26 18:01:45]     "exeErrorCode": 0,
[2025-11-26 18:01:45]     "exeErrorDiag": "",
[2025-11-26 18:01:45]     "pilotErrorCode": 0,
[2025-11-26 18:01:45]     "pilotErrorDiag": "",
[2025-11-26 18:01:45]  *** Listing of results directory ***
[2025-11-26 18:01:45] total 1326072
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:46 queuedata.json
[2025-11-26 18:01:45] -rwx------. 1 boincer umatlas     36292 Nov 24 14:46 runpilot2-wrapper.sh
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:01:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:14 run_atlas
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:14 job.xml
[2025-11-26 18:01:45] -rw-r--r--. 2 boincer umatlas 408621800 Nov 26 00:14 EVNT.47483658._001408.pool.root.1
[2025-11-26 18:01:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:14 start_atlas.sh
[2025-11-26 18:01:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:14 shared
[2025-11-26 18:01:45] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:14 input.tar.gz
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:14 boinc_lockfile
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:14 pandaJob.out
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas        57 Nov 26 00:14 setup.sh.local
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas    991877 Nov 26 00:14 agis_schedconf.cvmfs.json
[2025-11-26 18:01:45] drwx------. 5 boincer umatlas      4096 Nov 26 00:14 pilot3
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas       533 Nov 26 17:53 boinc_task_state.xml
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas      6948 Nov 26 17:57 init_data.xml
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas        95 Nov 26 17:59 pilot_heartbeat.json
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas 925991312 Nov 26 18:00 HITS.47556149._003948.pool.root.1
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas      1073 Nov 26 18:00 memory_monitor_summary.json
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:00 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas   2245038 Nov 26 18:00 log.47556149._003948.job.log.tgz.1
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas      8622 Nov 26 18:00 heartbeat.json
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:01 boinc_mmap_file
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas      4552 Nov 26 18:01 pilotlog.txt
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas        29 Nov 26 18:01 wrapper_checkpoint.txt
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas   7431933 Nov 26 18:01 log.47556149._003948.job.log.1
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas       353 Nov 26 18:01 output.list
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:01 runtime_log
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas   9697280 Nov 26 18:01 result.tar.gz
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 18:01 runtime_log.err
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas       664 Nov 26 18:01 kzqNDmGhrh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTtLKDmsxQ9Co.diag
[2025-11-26 18:01:45] -rw-r--r--. 1 boincer umatlas     21382 Nov 26 18:01 stderr.txt
[2025-11-26 18:01:45] HITS file was successfully produced:
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas 925991312 Nov 26 18:00 shared/HITS.pool.root.1
[2025-11-26 18:01:45]  *** Contents of shared directory: ***
[2025-11-26 18:01:45] total 1313416
[2025-11-26 18:01:45] -rw-r--r--. 2 boincer umatlas 408621800 Nov 26 00:14 ATLAS.root_0
[2025-11-26 18:01:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:14 start_atlas.sh
[2025-11-26 18:01:45] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:14 input.tar.gz
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas 925991312 Nov 26 18:00 HITS.pool.root.1
[2025-11-26 18:01:45] -rw-------. 1 boincer umatlas   9697280 Nov 26 18:01 result.tar.gz
18:01:47 (3388759): run_atlas exited; CPU time 203977.293153
18:01:47 (3388759): called boinc_finish(0)

</stderr_txt>
]]>

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