Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:15:55 (2876517): wrapper (7.7.26015): starting
00:15:55 (2876517): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:15:55] Arguments: --nthreads 9
[2025-11-26 00:15:55] Threads: 9
[2025-11-26 00:15:55] Checking for CVMFS
[2025-11-26 00:15:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:15:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:15:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:15:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:15:56] 2.13.3.0 11338 29483 235116 153310 2 335 26834327 32935937 44916 16776704 0 143616604 99.519 174143851 38968 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:15:56] CVMFS is ok
[2025-11-26 00:15:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:15:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:15:56] Further information can be found at the LHC@home message board.
[2025-11-26 00:15:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:15:56] Checking for apptainer binary...
[2025-11-26 00:15:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:15:56] Running /usr/bin/apptainer --version
[2025-11-26 00:15:56] apptainer version 1.4.4-1.el9
[2025-11-26 00:15:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:15:56] c7-3-17.aglt2.org
[2025-11-26 00:15:56] apptainer works
[2025-11-26 00:15:56] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:15:56] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:15:56] Starting ATLAS job with PandaID=6896242875
[2025-11-26 00:15:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:35:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:35:20] 2025-11-27 15:34:23,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:35:20] 2025-11-27 15:34:24,237 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 10:35:20] 2025-11-27 15:34:24,280 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3129.2605208333334
[2025-11-27 10:35:20] 2025-11-27 15:34:24,397 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896242875/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:35:20] 2025-11-27 15:34:24,398 | INFO     | extracted standard info from prmon json
[2025-11-27 10:35:20] 2025-11-27 15:34:24,398 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:35:20] 2025-11-27 15:34:24,398 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:35:20] 2025-11-27 15:34:24,429 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:35:20] 2025-11-27 15:34:24,433 | INFO     | sum of square deviations: 2571059175804.3228
[2025-11-27 10:35:20] 2025-11-27 15:34:24,632 | INFO     | sum of deviations: 15270192577639.057
[2025-11-27 10:35:20] 2025-11-27 15:34:24,632 | INFO     | mean x: 1764195923.2317193
[2025-11-27 10:35:20] 2025-11-27 15:34:24,633 | INFO     | mean y: 3164026.4817193677
[2025-11-27 10:35:20] 2025-11-27 15:34:24,633 | INFO     | intersect: -10474856761.976551
[2025-11-27 10:35:20] 2025-11-27 15:34:24,635 | INFO     | chi2: 13.371360874439095
[2025-11-27 10:35:20] 2025-11-27 15:34:24,636 | INFO     | sum of square deviations: 2552052461826.636
[2025-11-27 10:35:20] 2025-11-27 15:34:24,724 | INFO     | sum of deviations: 16080098306866.64
[2025-11-27 10:35:20] 2025-11-27 15:34:24,724 | INFO     | mean x: 1764195770.7335315
[2025-11-27 10:35:20] 2025-11-27 15:34:24,725 | INFO     | mean y: 3170524.913818722
[2025-11-27 10:35:20] 2025-11-27 15:34:24,725 | INFO     | intersect: -11112761396.661486
[2025-11-27 10:35:20] 2025-11-27 15:34:24,726 | INFO     | chi2: 9.586466358328822
[2025-11-27 10:35:20] 2025-11-27 15:34:24,726 | INFO     | current chi2=9.586466358328822 (change=28.305978364143446 %)
[2025-11-27 10:35:20] 2025-11-27 15:34:24,728 | INFO     | sum of square deviations: 2533139656586.443
[2025-11-27 10:35:20] 2025-11-27 15:34:24,812 | INFO     | sum of deviations: 16778922930996.613
[2025-11-27 10:35:20] 2025-11-27 15:34:24,813 | INFO     | mean x: 1764195618.2353525
[2025-11-27 10:35:20] 2025-11-27 15:34:24,813 | INFO     | mean y: 3176157.665342602
[2025-11-27 10:35:20] 2025-11-27 15:34:24,813 | INFO     | intersect: -11682441821.037983
[2025-11-27 10:35:20] 2025-11-27 15:34:24,815 | INFO     | chi2: 6.509100009597934
[2025-11-27 10:35:20] 2025-11-27 15:34:24,815 | INFO     | current chi2=6.509100009597934 (change=32.101154207433694 %)
[2025-11-27 10:35:20] 2025-11-27 15:34:24,816 | INFO     | sum of square deviations: 2514320527521.2573
[2025-11-27 10:35:20] 2025-11-27 15:34:24,899 | INFO     | sum of deviations: 17148276907074.895
[2025-11-27 10:35:20] 2025-11-27 15:34:24,900 | INFO     | mean x: 1764195465.7371826
[2025-11-27 10:35:20] 2025-11-27 15:34:24,900 | INFO     | mean y: 3179150.6854156298
[2025-11-27 10:35:20] 2025-11-27 15:34:24,900 | INFO     | intersect: -12029062575.66759
[2025-11-27 10:35:20] 2025-11-27 15:34:24,902 | INFO     | chi2: 5.464574969698596
[2025-11-27 10:35:20] 2025-11-27 15:34:24,902 | INFO     | current chi2=5.464574969698596 (change=16.047149964805325 %)
[2025-11-27 10:35:20] 2025-11-27 15:34:24,902 | INFO     | right removable region: 2008
[2025-11-27 10:35:20] 2025-11-27 15:34:24,904 | INFO     | sum of square deviations: 2552051558416.639
[2025-11-27 10:35:20] 2025-11-27 15:34:24,983 | INFO     | sum of deviations: 14497052809830.832
[2025-11-27 10:35:20] 2025-11-27 15:34:24,983 | INFO     | mean x: 1764196075.7335315
[2025-11-27 10:35:20] 2025-11-27 15:34:24,983 | INFO     | mean y: 3170227.9940564637
[2025-11-27 10:35:20] 2025-11-27 15:34:24,983 | INFO     | intersect: -10018431252.76644
[2025-11-27 10:35:20] 2025-11-27 15:34:24,985 | INFO     | chi2: 10.371840445742192
[2025-11-27 10:35:20] 2025-11-27 15:34:24,985 | INFO     | current chi2=10.371840445742192 (change=22.432424469455707 %)
[2025-11-27 10:35:20] 2025-11-27 15:34:24,985 | INFO     | left removable region: 10
[2025-11-27 10:35:20] 2025-11-27 15:34:24,986 | INFO     | sum of square deviations: 2473245719437.6426
[2025-11-27 10:35:20] 2025-11-27 15:34:25,058 | INFO     | sum of deviations: 16195688562081.799
[2025-11-27 10:35:20] 2025-11-27 15:34:25,059 | INFO     | mean x: 1764195740.2392392
[2025-11-27 10:35:20] 2025-11-27 15:34:25,059 | INFO     | mean y: 3187899.757757758
[2025-11-27 10:35:20] 2025-11-27 15:34:25,059 | INFO     | intersect: -11549390377.002691
[2025-11-27 10:35:20] 2025-11-27 15:34:25,060 | INFO     | chi2: 2.188866442363193
[2025-11-27 10:35:20] 2025-11-27 15:34:25,061 | INFO     | current memory leak: 6.55 B/s (using 1998 data points, chi2=2.19)
[2025-11-27 10:35:20] 2025-11-27 15:34:25,062 | INFO     | could have reported an average CPU frequency of 3142 MHz (71 samples)
[2025-11-27 10:35:20] 2025-11-27 15:34:25,062 | INFO     | ..............................
[2025-11-27 10:35:20] 2025-11-27 15:34:25,062 | INFO     | . Timing measurements:
[2025-11-27 10:35:20] 2025-11-27 15:34:25,063 | INFO     | . get job = 0 s
[2025-11-27 10:35:20] 2025-11-27 15:34:25,063 | INFO     | . initial setup = 2 s
[2025-11-27 10:35:20] 2025-11-27 15:34:25,063 | INFO     | . payload setup = 12 s
[2025-11-27 10:35:20] 2025-11-27 15:34:25,063 | INFO     | . stage-in = 0 s
[2025-11-27 10:35:20] 2025-11-27 15:34:25,063 | INFO     | . payload execution = 123425 s
[2025-11-27 10:35:20] 2025-11-27 15:34:25,063 | INFO     | . stage-out = 4 s
[2025-11-27 10:35:20] 2025-11-27 15:34:25,063 | INFO     | . log creation = 1 s
[2025-11-27 10:35:20] 2025-11-27 15:34:25,063 | INFO     | ..............................
[2025-11-27 10:35:20] 2025-11-27 15:34:25,230 | INFO     | time since job start (123486s) is within the limit (172800.0s)
[2025-11-27 10:35:20] 2025-11-27 15:34:25,250 | INFO     | 
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | job summary report
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | --------------------------------------------------
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | PanDA job id: 6896242875
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | task id: 47556173
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | errors: (none)
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | pilot state: finished 
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | transexitcode: 0
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | exeerrorcode: 0
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | exeerrordiag: 
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | exitcode: 0
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | exitmsg: OK
[2025-11-27 10:35:20] 2025-11-27 15:34:25,251 | INFO     | cpuconsumptiontime: 211567 s
[2025-11-27 10:35:20] 2025-11-27 15:34:25,252 | INFO     | nevents: 1000
[2025-11-27 10:35:20] 2025-11-27 15:34:25,252 | INFO     | neventsw: 0
[2025-11-27 10:35:20] 2025-11-27 15:34:25,252 | INFO     | pid: 2896366
[2025-11-27 10:35:20] 2025-11-27 15:34:25,252 | INFO     | pgrp: 2896366
[2025-11-27 10:35:20] 2025-11-27 15:34:25,252 | INFO     | corecount: 9
[2025-11-27 10:35:20] 2025-11-27 15:34:25,252 | INFO     | event service: False
[2025-11-27 10:35:20] 2025-11-27 15:34:25,252 | INFO     | sizes: {0: 2284141, 1: 2284340, 10: 2284602, 11: 2284630, 123439: 2370720, 123444: 2379714, 123445: 2379898, 123466: 2380144}
[2025-11-27 10:35:20] 2025-11-27 15:34:25,252 | INFO     | --------------------------------------------------
[2025-11-27 10:35:20] 2025-11-27 15:34:25,252 | INFO     | 
[2025-11-27 10:35:20] 2025-11-27 15:34:25,252 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 10:35:20] 2025-11-27 15:34:25,482 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,483 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,483 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,483 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,483 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,483 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,483 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,483 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,483 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:35:20] 2025-11-27 15:34:25,484 | INFO     | job 6896242875 has completed (purged errors)
[2025-11-27 10:35:20] 2025-11-27 15:34:25,485 | INFO     | overall cleanup function is called
[2025-11-27 10:35:20] 2025-11-27 15:34:26,509 | INFO     | --- collectZombieJob: --- 10, [2896366]
[2025-11-27 10:35:20] 2025-11-27 15:34:26,510 | INFO     | zombie collector waiting for pid 2896366
[2025-11-27 10:35:20] 2025-11-27 15:34:26,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:35:20] 2025-11-27 15:34:26,510 | INFO     | collected zombie processes
[2025-11-27 10:35:20] 2025-11-27 15:34:26,510 | INFO     | will attempt to kill all subprocesses of pid=2896366
[2025-11-27 10:35:20] 2025-11-27 15:34:28,046 | INFO     | process IDs to be killed: [2896366] (in reverse order)
[2025-11-27 10:35:20] 2025-11-27 15:34:28,465 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:35:20] 2025-11-27 15:34:28,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:35:20] 2025-11-27 15:34:28,499 | INFO     | did not find any defunct processes belonging to 2896366
[2025-11-27 10:35:20] 2025-11-27 15:34:28,533 | INFO     | did not find any defunct processes belonging to 2896366
[2025-11-27 10:35:20] 2025-11-27 15:34:28,534 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:35:20] 2025-11-27 15:34:28,534 | INFO     | ready for new job
[2025-11-27 10:35:20] 2025-11-27 15:34:28,534 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:35:20] 2025-11-27 15:34:28,541 | INFO     | ***************************************
[2025-11-27 10:35:20] 2025-11-27 15:34:28,541 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:35:20] 2025-11-27 15:34:28,541 | INFO     | ***************************************
[2025-11-27 10:35:20] 2025-11-27 15:34:28,541 | INFO     | 
[2025-11-27 10:35:20] 2025-11-27 15:34:28,546 | INFO     | architecture information:
[2025-11-27 10:35:20] 2025-11-27 15:34:28,553 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:35:20] 2025-11-27 15:34:28,574 | INFO     | cat /etc/os-release:
[2025-11-27 10:35:20] NAME="CentOS Linux"
[2025-11-27 10:35:20] VERSION="7 (Core)"
[2025-11-27 10:35:20] ID="centos"
[2025-11-27 10:35:20] ID_LIKE="rhel fedora"
[2025-11-27 10:35:20] VERSION_ID="7"
[2025-11-27 10:35:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:35:20] ANSI_COLOR="0;31"
[2025-11-27 10:35:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:35:20] HOME_URL="https://www.centos.org/"
[2025-11-27 10:35:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:35:20] 
[2025-11-27 10:35:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:35:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:35:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:35:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:35:20] 
[2025-11-27 10:35:20] 2025-11-27 15:34:28,575 | INFO     | ***************************************
[2025-11-27 10:35:20] 2025-11-27 15:34:29,090 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 10:35:20] 2025-11-27 15:34:29,278 | INFO     | sufficient remaining disk space (67835527168 B)
[2025-11-27 10:35:20] 2025-11-27 15:34:29,278 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:35:20] 2025-11-27 15:34:29,278 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:35:20] 2025-11-27 15:34:29,278 | INFO     | update_server=False
[2025-11-27 10:35:20] 2025-11-27 15:34:29,278 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:35:20] 2025-11-27 15:34:29,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:35:20] 2025-11-27 15:34:29,279 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:35:20] 2025-11-27 15:34:29,827 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:35:20] 2025-11-27 15:34:29,828 | INFO     | aborting loop
[2025-11-27 10:35:20] 2025-11-27 15:34:30,078 | INFO     | all data control threads have been joined
[2025-11-27 10:35:20] 2025-11-27 15:34:30,285 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:30,290 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:35:20] 2025-11-27 15:34:30,577 | INFO     | all payload control threads have been joined
[2025-11-27 10:35:20] 2025-11-27 15:34:30,604 | INFO     | all job control threads have been joined
[2025-11-27 10:35:20] 2025-11-27 15:34:30,777 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:30,779 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:30,830 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:30,834 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:31,021 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:31,084 | INFO     | [data] control thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:31,098 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:31,214 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:31,284 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:31,296 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:31,544 | INFO     | [job] validate thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:31,596 | INFO     | [payload] control thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:31,612 | INFO     | [job] control thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:31,894 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:33,295 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:35:20] 2025-11-27 15:34:50,649 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:35:20] 2025-11-27 15:34:51,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140678967740224)>', '<ExcThread(monitor, started 140678482876160)>']
[2025-11-27 10:35:20] 2025-11-27 15:34:56,197 | INFO     | all workflow threads have been joined
[2025-11-27 10:35:20] 2025-11-27 15:34:56,198 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:35:20] 2025-11-27 15:34:56,198 | INFO     | traces error code: 0
[2025-11-27 10:35:20] 2025-11-27 15:34:56,198 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:35:20] 2025-11-27 15:34:59,249 | INFO     | PID=2881443 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:35:20] 2025-11-27 15:34:59,249 | INFO     | .. there are 67 such processes running
[2025-11-27 10:35:20] 2025-11-27 15:34:59,249 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:35:20] 2025-11-27 15:34:59,249 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:35:20] 2025-11-27 15:34:59,249 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:35:20] 2025-11-27 15:34:59,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:35:20] 2025-11-27 15:34:59,249 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 10:35:20] 2025-11-27 15:34:59,249 | INFO     | [monitor] control thread has ended
[2025-11-27 10:35:20] 2025-11-27 15:34:59,464 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:35:20] 2025-11-27 15:34:59,525 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:35:20] 2025-11-27 15:34:59,576 [wrapper] pilotpid: 2881443
[2025-11-27 10:35:20] 2025-11-27 15:34:59,648 [wrapper] Pilot exit status: 0
[2025-11-27 10:35:20] 2025-11-27 15:34:59,727 [wrapper] pandaids: 6896242875
[2025-11-27 10:35:20] 2025-11-27 15:34:59,907 [wrapper] cleanup supervisor_pilot 3317624 2881444
[2025-11-27 10:35:20] 2025-11-27 15:34:59,910 [wrapper] Test setup, not cleaning
[2025-11-27 10:35:20] 2025-11-27 15:34:59,927 [wrapper] apfmon messages muted
[2025-11-27 10:35:20] 2025-11-27 15:34:59,957 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:35:20] 2025-11-27 15:34:59,966 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:35:20]  *** Error codes and diagnostics ***
[2025-11-27 10:35:20]     "exeErrorCode": 0,
[2025-11-27 10:35:20]     "exeErrorDiag": "",
[2025-11-27 10:35:20]     "pilotErrorCode": 0,
[2025-11-27 10:35:20]     "pilotErrorDiag": "",
[2025-11-27 10:35:20]  *** Listing of results directory ***
[2025-11-27 10:35:20] total 1348424
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 15:01 pilot3.tar.gz
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 15:16 queuedata.json
[2025-11-27 10:35:20] -rwx------. 1 boincer umatlas     36292 Nov 24 15:19 runpilot2-wrapper.sh
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:35:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:15 run_atlas
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:15 job.xml
[2025-11-27 10:35:20] -rw-r--r--. 2 boincer umatlas 409154770 Nov 26 00:15 EVNT.47483658._003053.pool.root.1
[2025-11-27 10:35:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:15 start_atlas.sh
[2025-11-27 10:35:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:15 shared
[2025-11-27 10:35:20] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:15 input.tar.gz
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:15 boinc_lockfile
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:15 pandaJob.out
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas        57 Nov 26 00:15 setup.sh.local
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas    991877 Nov 26 00:16 agis_schedconf.cvmfs.json
[2025-11-27 10:35:20] drwx------. 5 boincer umatlas      4096 Nov 26 00:16 pilot3
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas       534 Nov 27 10:14 boinc_task_state.xml
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 10:28 init_data.xml
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas 929285674 Nov 27 10:33 HITS.47556173._000354.pool.root.1
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas      1075 Nov 27 10:33 memory_monitor_summary.json
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:34 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas   3038527 Nov 27 10:34 log.47556173._000354.job.log.tgz.1
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas        95 Nov 27 10:34 pilot_heartbeat.json
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas      8628 Nov 27 10:34 heartbeat.json
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas       893 Nov 27 10:34 pilotlog.txt
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas  16175558 Nov 27 10:34 log.47556173._000354.job.log.1
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas       353 Nov 27 10:35 output.list
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:35 runtime_log
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas  19230720 Nov 27 10:35 result.tar.gz
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas      9339 Nov 27 10:35 runtime_log.err
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas       669 Nov 27 10:35 2U6KDmBDsh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJCJKDmaZm6xm.diag
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas        30 Nov 27 10:35 wrapper_checkpoint.txt
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:35 boinc_mmap_file
[2025-11-27 10:35:20] -rw-r--r--. 1 boincer umatlas     21331 Nov 27 10:35 stderr.txt
[2025-11-27 10:35:20] HITS file was successfully produced:
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas 929285674 Nov 27 10:33 shared/HITS.pool.root.1
[2025-11-27 10:35:20]  *** Contents of shared directory: ***
[2025-11-27 10:35:20] total 1326460
[2025-11-27 10:35:20] -rw-r--r--. 2 boincer umatlas 409154770 Nov 26 00:15 ATLAS.root_0
[2025-11-27 10:35:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:15 start_atlas.sh
[2025-11-27 10:35:20] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:15 input.tar.gz
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas 929285674 Nov 27 10:33 HITS.pool.root.1
[2025-11-27 10:35:20] -rw-------. 1 boincer umatlas  19230720 Nov 27 10:35 result.tar.gz
10:35:21 (2876517): run_atlas exited; CPU time 215923.103974
10:35:21 (2876517): called boinc_finish(0)

</stderr_txt>
]]>

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