Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:37:03 (1397548): wrapper (7.7.26015): starting
16:37:03 (1397548): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:37:03] Arguments: --nthreads 8
[2025-11-26 16:37:03] Threads: 8
[2025-11-26 16:37:03] Checking for CVMFS
[2025-11-26 16:37:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:37:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:37:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:37:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:37:04] 2.13.3.0 15397 30459 263968 153335 3 1026 27740314 32935936 48685 16776704 0 312126048 99.618 301557796 35990 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:37:04] CVMFS is ok
[2025-11-26 16:37:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:37:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:37:04] Further information can be found at the LHC@home message board.
[2025-11-26 16:37:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:37:04] Checking for apptainer binary...
[2025-11-26 16:37:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:37:04] Running /usr/bin/apptainer --version
[2025-11-26 16:37:04] apptainer version 1.4.4-1.el9
[2025-11-26 16:37:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:37:04] c7-16-8.aglt2.org
[2025-11-26 16:37:04] apptainer works
[2025-11-26 16:37:04] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:37:04] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:37:05] Starting ATLAS job with PandaID=6891584966
[2025-11-26 16:37:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:20:13 (1397548): BOINC client no longer exists - exiting
23:20:13 (1397548): timer handler: client dead, exiting
23:31:54 (748107): wrapper (7.7.26015): starting
23:31:54 (748107): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:31:54] Arguments: --nthreads 8
[2025-11-26 23:31:54] Threads: 8
[2025-11-26 23:31:54] This job has been restarted, cleaning up previous attempt
[2025-11-26 23:31:55] Checking for CVMFS
[2025-11-26 23:31:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:31:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:31:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:31:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:31:55] 2.13.3.0 15397 30874 222568 153347 1 206 27836279 32935936 50347 16776704 0 318365569 99.620 305969494 35775 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 23:31:55] CVMFS is ok
[2025-11-26 23:31:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:31:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:31:55] Further information can be found at the LHC@home message board.
[2025-11-26 23:31:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:31:55] Checking for apptainer binary...
[2025-11-26 23:31:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:31:55] Running /usr/bin/apptainer --version
[2025-11-26 23:31:55] apptainer version 1.4.4-1.el9
[2025-11-26 23:31:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:31:55] c7-16-8.aglt2.org
[2025-11-26 23:31:55] apptainer works
[2025-11-26 23:31:55] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:31:55] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:31:55] Starting ATLAS job with PandaID=6891584966
[2025-11-26 23:31:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:45:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:45:35] 2025-11-28 01:44:23,655 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 20:45:35] 2025-11-28 01:44:23,655 | INFO     | log transfer has been attempted: DONE
[2025-11-27 20:45:35] 2025-11-28 01:44:23,655 | INFO     | job 6891584966 has finished - writing final server update
[2025-11-27 20:45:35] 2025-11-28 01:44:23,655 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 20:45:35] 2025-11-28 01:44:23,655 | INFO     | executing command: lscpu
[2025-11-27 20:45:35] 2025-11-28 01:44:23,720 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 20:45:35] 2025-11-28 01:44:23,748 | INFO     | time since job start (76334s) is within the limit (172800.0s)
[2025-11-27 20:45:35] 2025-11-28 01:44:23,748 | INFO     | 76336s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 20:45:35] 2025-11-28 01:44:24,926 | INFO     | monitor loop #3749: job 0:6891584966 is in state 'finished'
[2025-11-27 20:45:35] 2025-11-28 01:44:24,926 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:45:35] 2025-11-28 01:44:25,754 | INFO     | time since job start (76336s) is within the limit (172800.0s)
[2025-11-27 20:45:35] 2025-11-28 01:44:27,439 | INFO     | monitor loop #3750: job 0:6891584966 is in state 'finished'
[2025-11-27 20:45:35] 2025-11-28 01:44:27,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:45:36] 2025-11-28 01:44:27,795 | INFO     | time since job start (76338s) is within the limit (172800.0s)
[2025-11-27 20:45:36] 2025-11-28 01:44:29,801 | INFO     | time since job start (76340s) is within the limit (172800.0s)
[2025-11-27 20:45:36] 2025-11-28 01:44:29,956 | INFO     | monitor loop #3751: job 0:6891584966 is in state 'finished'
[2025-11-27 20:45:36] 2025-11-28 01:44:29,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:45:36] 2025-11-28 01:44:30,359 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 20:45:36] 2025-11-28 01:44:30,392 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3204.286864583333
[2025-11-27 20:45:36] 2025-11-28 01:44:30,407 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891584966/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:45:36] 2025-11-28 01:44:30,408 | INFO     | extracted standard info from prmon json
[2025-11-27 20:45:36] 2025-11-28 01:44:30,408 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:45:36] 2025-11-28 01:44:30,408 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:45:36] 2025-11-28 01:44:30,426 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:45:36] 2025-11-28 01:44:30,427 | INFO     | sum of square deviations: 607083169572.994
[2025-11-27 20:45:36] 2025-11-28 01:44:30,463 | INFO     | sum of deviations: 36663524600667.33
[2025-11-27 20:45:36] 2025-11-28 01:44:30,463 | INFO     | mean x: 1764256087.6434853
[2025-11-27 20:45:36] 2025-11-28 01:44:30,464 | INFO     | mean y: 5801590.352517986
[2025-11-27 20:45:36] 2025-11-28 01:44:30,464 | INFO     | intersect: -106542773157.14195
[2025-11-27 20:45:36] 2025-11-28 01:44:30,465 | INFO     | chi2: 66.25342683680681
[2025-11-27 20:45:36] 2025-11-28 01:44:30,466 | INFO     | sum of square deviations: 599833260553.4158
[2025-11-27 20:45:36] 2025-11-28 01:44:30,496 | INFO     | sum of deviations: 37654178974105.02
[2025-11-27 20:45:36] 2025-11-28 01:44:30,496 | INFO     | mean x: 1764255935.1460674
[2025-11-27 20:45:36] 2025-11-28 01:44:30,496 | INFO     | mean y: 5822425.631621188
[2025-11-27 20:45:36] 2025-11-28 01:44:30,497 | INFO     | intersect: -110744302828.8869
[2025-11-27 20:45:36] 2025-11-28 01:44:30,498 | INFO     | chi2: 60.95113728870872
[2025-11-27 20:45:36] 2025-11-28 01:44:30,498 | INFO     | current chi2=60.95113728870872 (change=8.003041957600935 %)
[2025-11-27 20:45:36] 2025-11-28 01:44:30,498 | INFO     | right removable region: 1245
[2025-11-27 20:45:36] 2025-11-28 01:44:30,499 | INFO     | sum of square deviations: 599832921759.9971
[2025-11-27 20:45:36] 2025-11-28 01:44:30,594 | INFO     | sum of deviations: 35798462227282.16
[2025-11-27 20:45:36] 2025-11-28 01:44:30,594 | INFO     | mean x: 1764256240.1444623
[2025-11-27 20:45:36] 2025-11-28 01:44:30,595 | INFO     | mean y: 5819777.921348315
[2025-11-27 20:45:36] 2025-11-28 01:44:30,595 | INFO     | intersect: -105286267536.56717
[2025-11-27 20:45:36] 2025-11-28 01:44:30,596 | INFO     | chi2: 63.88686464461132
[2025-11-27 20:45:36] 2025-11-28 01:44:30,596 | INFO     | current chi2=63.88686464461132 (change=3.571984582812182 %)
[2025-11-27 20:45:36] 2025-11-28 01:44:30,596 | INFO     | left removable region: 10
[2025-11-27 20:45:36] 2025-11-28 01:44:30,597 | INFO     | sum of square deviations: 584086605962.0752
[2025-11-27 20:45:36] 2025-11-28 01:44:30,633 | INFO     | sum of deviations: 36335407508507.63
[2025-11-27 20:45:36] 2025-11-28 01:44:30,633 | INFO     | mean x: 1764256209.6469636
[2025-11-27 20:45:36] 2025-11-28 01:44:30,633 | INFO     | mean y: 5858622.024291498
[2025-11-27 20:45:36] 2025-11-28 01:44:30,633 | INFO     | intersect: -109746646695.82552
[2025-11-27 20:45:36] 2025-11-28 01:44:30,635 | INFO     | chi2: 57.15095170837641
[2025-11-27 20:45:36] 2025-11-28 01:44:30,635 | INFO     | current memory leak: 62.21 B/s (using 1235 data points, chi2=57.15)
[2025-11-27 20:45:36] 2025-11-28 01:44:30,636 | INFO     | could have reported an average CPU frequency of 3162 MHz (45 samples)
[2025-11-27 20:45:36] 2025-11-28 01:44:30,636 | INFO     | ..............................
[2025-11-27 20:45:36] 2025-11-28 01:44:30,636 | INFO     | . Timing measurements:
[2025-11-27 20:45:36] 2025-11-28 01:44:30,636 | INFO     | . get job = 0 s
[2025-11-27 20:45:36] 2025-11-28 01:44:30,636 | INFO     | . initial setup = 2 s
[2025-11-27 20:45:36] 2025-11-28 01:44:30,637 | INFO     | . payload setup = 7 s
[2025-11-27 20:45:36] 2025-11-28 01:44:30,637 | INFO     | . stage-in = 0 s
[2025-11-27 20:45:36] 2025-11-28 01:44:30,637 | INFO     | . payload execution = 76301 s
[2025-11-27 20:45:36] 2025-11-28 01:44:30,637 | INFO     | . stage-out = 4 s
[2025-11-27 20:45:36] 2025-11-28 01:44:30,637 | INFO     | . log creation = 1 s
[2025-11-27 20:45:36] 2025-11-28 01:44:30,637 | INFO     | ..............................
[2025-11-27 20:45:36] 2025-11-28 01:44:31,063 | INFO     | 
[2025-11-27 20:45:36] 2025-11-28 01:44:31,064 | INFO     | job summary report
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | --------------------------------------------------
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | PanDA job id: 6891584966
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | task id: 47493068
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | errors: (none)
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | pilot state: finished 
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | transexitcode: 0
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | exeerrorcode: 0
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | exeerrordiag: 
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | exitcode: 0
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | exitmsg: OK
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | cpuconsumptiontime: 208147 s
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | nevents: 1000
[2025-11-27 20:45:36] 2025-11-28 01:44:31,065 | INFO     | neventsw: 0
[2025-11-27 20:45:36] 2025-11-28 01:44:31,066 | INFO     | pid: 835749
[2025-11-27 20:45:36] 2025-11-28 01:44:31,066 | INFO     | pgrp: 835749
[2025-11-27 20:45:36] 2025-11-28 01:44:31,066 | INFO     | corecount: 8
[2025-11-27 20:45:36] 2025-11-28 01:44:31,066 | INFO     | event service: False
[2025-11-27 20:45:36] 2025-11-28 01:44:31,066 | INFO     | sizes: {0: 2284133, 1: 2284332, 7: 2284594, 11: 2284622, 76310: 2343814, 76311: 2343813, 76316: 2352991, 76317: 2353047, 76325: 2353293}
[2025-11-27 20:45:36] 2025-11-28 01:44:31,066 | INFO     | --------------------------------------------------
[2025-11-27 20:45:36] 2025-11-28 01:44:31,066 | INFO     | 
[2025-11-27 20:45:36] 2025-11-28 01:44:31,066 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 20:45:36] 2025-11-28 01:44:31,130 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,130 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,130 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,131 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:45:36] 2025-11-28 01:44:31,132 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,132 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:45:36] 2025-11-28 01:44:31,132 | INFO     | job 6891584966 has completed (purged errors)
[2025-11-27 20:45:36] 2025-11-28 01:44:31,132 | INFO     | overall cleanup function is called
[2025-11-27 20:45:36] 2025-11-28 01:44:32,150 | INFO     | --- collectZombieJob: --- 10, [835749]
[2025-11-27 20:45:36] 2025-11-28 01:44:32,151 | INFO     | zombie collector waiting for pid 835749
[2025-11-27 20:45:36] 2025-11-28 01:44:32,151 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:45:36] 2025-11-28 01:44:32,151 | INFO     | collected zombie processes
[2025-11-27 20:45:36] 2025-11-28 01:44:32,151 | INFO     | will attempt to kill all subprocesses of pid=835749
[2025-11-27 20:45:36] 2025-11-28 01:44:32,926 | INFO     | process IDs to be killed: [835749] (in reverse order)
[2025-11-27 20:45:36] 2025-11-28 01:44:33,155 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:45:36] 2025-11-28 01:44:33,155 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:45:36] 2025-11-28 01:44:33,188 | INFO     | did not find any defunct processes belonging to 835749
[2025-11-27 20:45:36] 2025-11-28 01:44:33,218 | INFO     | did not find any defunct processes belonging to 835749
[2025-11-27 20:45:36] 2025-11-28 01:44:33,219 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:45:36] 2025-11-28 01:44:33,219 | INFO     | ready for new job
[2025-11-27 20:45:36] 2025-11-28 01:44:33,219 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:45:36] 2025-11-28 01:44:33,224 | INFO     | ***************************************
[2025-11-27 20:45:36] 2025-11-28 01:44:33,224 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:45:36] 2025-11-28 01:44:33,224 | INFO     | ***************************************
[2025-11-27 20:45:36] 2025-11-28 01:44:33,225 | INFO     | 
[2025-11-27 20:45:36] 2025-11-28 01:44:33,230 | INFO     | architecture information:
[2025-11-27 20:45:36] 2025-11-28 01:44:33,230 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:45:36] 2025-11-28 01:44:33,268 | INFO     | cat /etc/os-release:
[2025-11-27 20:45:36] NAME="CentOS Linux"
[2025-11-27 20:45:36] VERSION="7 (Core)"
[2025-11-27 20:45:36] ID="centos"
[2025-11-27 20:45:36] ID_LIKE="rhel fedora"
[2025-11-27 20:45:36] VERSION_ID="7"
[2025-11-27 20:45:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:45:36] ANSI_COLOR="0;31"
[2025-11-27 20:45:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:45:36] HOME_URL="https://www.centos.org/"
[2025-11-27 20:45:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:45:36] 
[2025-11-27 20:45:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:45:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:45:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:45:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:45:36] 
[2025-11-27 20:45:36] 2025-11-28 01:44:33,268 | INFO     | ***************************************
[2025-11-27 20:45:36] 2025-11-28 01:44:33,772 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 20:45:36] 2025-11-28 01:44:33,823 | INFO     | sufficient remaining disk space (69784829952 B)
[2025-11-27 20:45:36] 2025-11-28 01:44:33,823 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:45:36] 2025-11-28 01:44:33,823 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:45:36] 2025-11-28 01:44:33,823 | INFO     | update_server=False
[2025-11-27 20:45:36] 2025-11-28 01:44:33,824 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:45:36] 2025-11-28 01:44:33,824 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:45:36] 2025-11-28 01:44:33,824 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:45:36] 2025-11-28 01:44:33,824 | INFO     | aborting loop
[2025-11-27 20:45:36] 2025-11-28 01:44:33,943 | INFO     | all data control threads have been joined
[2025-11-27 20:45:36] 2025-11-28 01:44:34,051 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:45:36] 2025-11-28 01:44:34,720 | INFO     | all payload control threads have been joined
[2025-11-27 20:45:36] 2025-11-28 01:44:34,830 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:34,831 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:34,869 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:34,949 | INFO     | [data] control thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:34,964 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:35,314 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:35,315 | INFO     | [job] validate thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:35,460 | INFO     | all job control threads have been joined
[2025-11-27 20:45:36] 2025-11-28 01:44:35,542 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:35,726 | INFO     | [payload] control thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:35,761 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:35,833 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:35,840 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:45:36] 2025-11-28 01:44:35,997 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:36,325 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:36,466 | INFO     | [job] control thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:36,845 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:44:38,082 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:45:36] 2025-11-28 01:45:03,800 | INFO     | PID=776816 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 20:45:36] 2025-11-28 01:45:03,800 | INFO     | .. there are 79 such processes running
[2025-11-27 20:45:36] 2025-11-28 01:45:03,802 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:45:36] 2025-11-28 01:45:03,802 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:45:36] 2025-11-28 01:45:03,802 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:45:36] 2025-11-28 01:45:29,262 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:45:36] 2025-11-28 01:45:30,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140416841959232)>', '<ExcThread(monitor, started 140416347260672)>']
[2025-11-27 20:45:36] 2025-11-28 01:45:30,971 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:45:36] 2025-11-28 01:45:30,972 | INFO     | [monitor] control thread has ended
[2025-11-27 20:45:36] 2025-11-28 01:45:35,397 | INFO     | all workflow threads have been joined
[2025-11-27 20:45:36] 2025-11-28 01:45:35,397 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:45:36] 2025-11-28 01:45:35,398 | INFO     | traces error code: 0
[2025-11-27 20:45:36] 2025-11-28 01:45:35,399 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:45:36] 2025-11-28 01:45:35,580 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:45:36] 2025-11-28 01:45:35,583 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:45:36] 2025-11-28 01:45:35,585 [wrapper] pilotpid: 776816
[2025-11-27 20:45:36] 2025-11-28 01:45:35,587 [wrapper] Pilot exit status: 0
[2025-11-27 20:45:36] 2025-11-28 01:45:35,600 [wrapper] pandaids: 6891584966 6891584966
[2025-11-27 20:45:36] 2025-11-28 01:45:35,770 [wrapper] cleanup supervisor_pilot  397705 776817
[2025-11-27 20:45:36] 2025-11-28 01:45:35,798 [wrapper] Test setup, not cleaning
[2025-11-27 20:45:36] 2025-11-28 01:45:35,803 [wrapper] apfmon messages muted
[2025-11-27 20:45:36] 2025-11-28 01:45:35,806 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:45:36] 2025-11-28 01:45:35,808 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:45:36]  *** Error codes and diagnostics ***
[2025-11-27 20:45:36]     "exeErrorCode": 0,
[2025-11-27 20:45:36]     "exeErrorDiag": "",
[2025-11-27 20:45:36]     "pilotErrorCode": 0,
[2025-11-27 20:45:36]     "pilotErrorDiag": "",
[2025-11-27 20:45:36]  *** Listing of results directory ***
[2025-11-27 20:45:36] total 1719440
[2025-11-27 20:45:36] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 12:24 queuedata.json
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 12:24 pilot3.tar.gz
[2025-11-27 20:45:36] -rwx------. 1 boincer umatlas     36292 Nov 18 12:25 runpilot2-wrapper.sh
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:45:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:37 run_atlas
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:37 job.xml
[2025-11-27 20:45:36] -rw-r--r--. 3 boincer umatlas 409609488 Nov 26 16:37 EVNT.47493065._000473.pool.root.1
[2025-11-27 20:45:36] -rw-r--r--. 3 boincer umatlas 409609488 Nov 26 16:37 ATLAS.root_0
[2025-11-27 20:45:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:37 shared
[2025-11-27 20:45:36] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 16:37 input.tar.gz
[2025-11-27 20:45:36] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 16:37 start_atlas.sh
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:37 boinc_lockfile
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 23:31 pandaJob.out
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas    991570 Nov 26 23:32 agis_schedconf.cvmfs.json
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas       533 Nov 27 20:31 boinc_task_state.xml
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas      6946 Nov 27 20:38 init_data.xml
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas 916072452 Nov 27 20:42 HITS.47493068._004725.pool.root.1
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas      1075 Nov 27 20:44 memory_monitor_summary.json
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas   2246245 Nov 27 20:44 log.47493068._004725.job.log.tgz.1
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas      8641 Nov 27 20:44 heartbeat.json
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas        96 Nov 27 20:45 pilot_heartbeat.json
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:45 wrapper_checkpoint.txt
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas      4823 Nov 27 20:45 pilotlog.txt
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas   8496823 Nov 27 20:45 log.47493068._004725.job.log.1
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas       353 Nov 27 20:45 output.list
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:45 boinc_mmap_file
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:45 runtime_log
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas  10762240 Nov 27 20:45 result.tar.gz
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas       791 Nov 27 20:45 vfiMDm4cef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmn1FKDmtGRMJm.diag
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas      8784 Nov 27 20:45 runtime_log.err
[2025-11-27 20:45:36] -rw-r--r--. 1 boincer umatlas     24075 Nov 27 20:45 stderr.txt
[2025-11-27 20:45:36] HITS file was successfully produced:
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas 916072452 Nov 27 20:42 shared/HITS.pool.root.1
[2025-11-27 20:45:36]  *** Contents of shared directory: ***
[2025-11-27 20:45:36] total 1305732
[2025-11-27 20:45:36] -rw-r--r--. 3 boincer umatlas 409609488 Nov 26 16:37 ATLAS.root_0
[2025-11-27 20:45:36] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 16:37 input.tar.gz
[2025-11-27 20:45:36] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 16:37 start_atlas.sh
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas 916072452 Nov 27 20:42 HITS.pool.root.1
[2025-11-27 20:45:36] -rw-------. 1 boincer umatlas  10762240 Nov 27 20:45 result.tar.gz
20:45:37 (748107): run_atlas exited; CPU time 210217.716571
20:45:37 (748107): called boinc_finish(0)

</stderr_txt>
]]>

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