Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:14:17 (680400): wrapper (7.7.26015): starting
00:14:17 (680400): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:14:17] Arguments: --nthreads 8
[2025-11-26 00:14:17] Threads: 8
[2025-11-26 00:14:17] Checking for CVMFS
[2025-11-26 00:14:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:14:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:14:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:14:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:14:19] 2.13.3.0 11959 29617 363896 153310 3 253 26938385 32935937 44647 16776704 0 147756387 99.492 193402060 34976 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:14:19] CVMFS is ok
[2025-11-26 00:14:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:14:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:14:19] Further information can be found at the LHC@home message board.
[2025-11-26 00:14:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:14:19] Checking for apptainer binary...
[2025-11-26 00:14:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:14:19] Running /usr/bin/apptainer --version
[2025-11-26 00:14:19] apptainer version 1.4.4-1.el9
[2025-11-26 00:14:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:14:20] c6-12-27-3.aglt2.org
[2025-11-26 00:14:20] apptainer works
[2025-11-26 00:14:20] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:14:20] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:14:20] Starting ATLAS job with PandaID=6891106654
[2025-11-26 00:14:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:14:51]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:14:51] 2025-11-27 08:13:54,572 | INFO     | monitor loop #4854: job 0:6891106654 is in state 'finished'
[2025-11-27 03:14:51] 2025-11-27 08:13:54,572 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:14:51] 2025-11-27 08:13:56,492 | INFO     | time since job start (97116s) is within the limit (172800.0s)
[2025-11-27 03:14:51] 2025-11-27 08:13:57,145 | INFO     | monitor loop #4855: job 0:6891106654 is in state 'finished'
[2025-11-27 03:14:51] 2025-11-27 08:13:57,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:14:51] 2025-11-27 08:13:58,499 | INFO     | time since job start (97118s) is within the limit (172800.0s)
[2025-11-27 03:14:51] 2025-11-27 08:13:59,682 | INFO     | monitor loop #4856: job 0:6891106654 is in state 'finished'
[2025-11-27 03:14:51] 2025-11-27 08:13:59,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:14:51] 2025-11-27 08:14:00,513 | INFO     | time since job start (97120s) is within the limit (172800.0s)
[2025-11-27 03:14:51] 2025-11-27 08:14:02,187 | INFO     | monitor loop #4857: job 0:6891106654 is in state 'finished'
[2025-11-27 03:14:51] 2025-11-27 08:14:02,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:14:51] 2025-11-27 08:14:02,523 | INFO     | time since job start (97122s) is within the limit (172800.0s)
[2025-11-27 03:14:51] 2025-11-27 08:14:03,120 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 03:14:51] 2025-11-27 08:14:03,147 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2671.1400624999987
[2025-11-27 03:14:51] 2025-11-27 08:14:03,188 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6891106654/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:14:51] 2025-11-27 08:14:03,189 | INFO     | extracted standard info from prmon json
[2025-11-27 03:14:51] 2025-11-27 08:14:03,189 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:14:51] 2025-11-27 08:14:03,189 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:14:51] 2025-11-27 08:14:03,240 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:14:51] 2025-11-27 08:14:03,264 | INFO     | sum of square deviations: 1244063916317.1787
[2025-11-27 03:14:51] 2025-11-27 08:14:03,523 | INFO     | sum of deviations: 4864547256754.697
[2025-11-27 03:14:51] 2025-11-27 08:14:03,524 | INFO     | mean x: 1764182709.2699811
[2025-11-27 03:14:51] 2025-11-27 08:14:03,524 | INFO     | mean y: 2875746.0566393957
[2025-11-27 03:14:51] 2025-11-27 08:14:03,524 | INFO     | intersect: -6895443581.617966
[2025-11-27 03:14:51] 2025-11-27 08:14:03,526 | INFO     | chi2: 16.351083533880814
[2025-11-27 03:14:51] 2025-11-27 08:14:03,533 | INFO     | sum of square deviations: 1232358282412.1077
[2025-11-27 03:14:51] 2025-11-27 08:14:03,802 | INFO     | sum of deviations: 5363294741076.684
[2025-11-27 03:14:51] 2025-11-27 08:14:03,803 | INFO     | mean x: 1764182556.7796717
[2025-11-27 03:14:51] 2025-11-27 08:14:03,803 | INFO     | mean y: 2882243.884469697
[2025-11-27 03:14:51] 2025-11-27 08:14:03,803 | INFO     | intersect: -7674942593.350276
[2025-11-27 03:14:51] 2025-11-27 08:14:03,805 | INFO     | chi2: 13.560397947209015
[2025-11-27 03:14:51] 2025-11-27 08:14:03,805 | INFO     | current chi2=13.560397947209015 (change=17.067282305110023 %)
[2025-11-27 03:14:51] 2025-11-27 08:14:03,805 | INFO     | right removable region: 1583
[2025-11-27 03:14:51] 2025-11-27 08:14:03,808 | INFO     | sum of square deviations: 1232355403032.662
[2025-11-27 03:14:51] 2025-11-27 08:14:04,140 | INFO     | sum of deviations: 4241418369693.182
[2025-11-27 03:14:51] 2025-11-27 08:14:04,141 | INFO     | mean x: 1764182861.7790403
[2025-11-27 03:14:51] 2025-11-27 08:14:04,141 | INFO     | mean y: 2883861.3005050505
[2025-11-27 03:14:51] 2025-11-27 08:14:04,141 | INFO     | intersect: -6068934040.445808
[2025-11-27 03:14:51] 2025-11-27 08:14:04,155 | INFO     | chi2: 12.360750661070343
[2025-11-27 03:14:51] 2025-11-27 08:14:04,155 | INFO     | current chi2=12.360750661070343 (change=24.40408835623748 %)
[2025-11-27 03:14:51] 2025-11-27 08:14:04,155 | INFO     | left removable region: 10
[2025-11-27 03:14:51] 2025-11-27 08:14:04,157 | INFO     | sum of square deviations: 1206858966837.1653
[2025-11-27 03:14:51] 2025-11-27 08:14:04,496 | INFO     | sum of deviations: 4323028730012.3003
[2025-11-27 03:14:51] 2025-11-27 08:14:04,496 | INFO     | mean x: 1764182831.301335
[2025-11-27 03:14:51] 2025-11-27 08:14:04,496 | INFO     | mean y: 2898927.4825174827
[2025-11-27 03:14:51] 2025-11-27 08:14:04,496 | INFO     | intersect: -6316491551.669577
[2025-11-27 03:14:51] 2025-11-27 08:14:04,499 | INFO     | chi2: 5.975469968006141
[2025-11-27 03:14:51] 2025-11-27 08:14:04,499 | INFO     | current memory leak: 3.58 B/s (using 1573 data points, chi2=5.98)
[2025-11-27 03:14:51] 2025-11-27 08:14:04,518 | INFO     | could have reported an average CPU frequency of 2703 MHz (56 samples)
[2025-11-27 03:14:51] 2025-11-27 08:14:04,518 | INFO     | ..............................
[2025-11-27 03:14:51] 2025-11-27 08:14:04,518 | INFO     | . Timing measurements:
[2025-11-27 03:14:51] 2025-11-27 08:14:04,518 | INFO     | . get job = 0 s
[2025-11-27 03:14:51] 2025-11-27 08:14:04,518 | INFO     | . initial setup = 4 s
[2025-11-27 03:14:51] 2025-11-27 08:14:04,519 | INFO     | . payload setup = 46 s
[2025-11-27 03:14:51] 2025-11-27 08:14:04,519 | INFO     | . stage-in = 0 s
[2025-11-27 03:14:51] 2025-11-27 08:14:04,519 | INFO     | . payload execution = 96959 s
[2025-11-27 03:14:51] 2025-11-27 08:14:04,519 | INFO     | . stage-out = 11 s
[2025-11-27 03:14:51] 2025-11-27 08:14:04,519 | INFO     | . log creation = 3 s
[2025-11-27 03:14:51] 2025-11-27 08:14:04,519 | INFO     | ..............................
[2025-11-27 03:14:51] 2025-11-27 08:14:05,989 | INFO     | 
[2025-11-27 03:14:51] 2025-11-27 08:14:05,989 | INFO     | job summary report
[2025-11-27 03:14:51] 2025-11-27 08:14:05,989 | INFO     | --------------------------------------------------
[2025-11-27 03:14:51] 2025-11-27 08:14:05,989 | INFO     | PanDA job id: 6891106654
[2025-11-27 03:14:51] 2025-11-27 08:14:05,989 | INFO     | task id: 47483661
[2025-11-27 03:14:51] 2025-11-27 08:14:05,989 | INFO     | errors: (none)
[2025-11-27 03:14:51] 2025-11-27 08:14:05,989 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | pilot state: finished 
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | transexitcode: 0
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | exeerrorcode: 0
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | exeerrordiag: 
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | exitcode: 0
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | exitmsg: OK
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | cpuconsumptiontime: 259481 s
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | nevents: 1000
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | neventsw: 0
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | pid: 705585
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | pgrp: 705585
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | corecount: 8
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | event service: False
[2025-11-27 03:14:51] 2025-11-27 08:14:05,990 | INFO     | sizes: {0: 2284134, 1: 2284333, 12: 2284333, 24: 2284361, 30: 2284651, 35: 2284679, 97009: 2351869, 97010: 2351868, 97022: 2360948, 97023: 2361004, 97057: 2361250}
[2025-11-27 03:14:51] 2025-11-27 08:14:05,991 | INFO     | --------------------------------------------------
[2025-11-27 03:14:51] 2025-11-27 08:14:05,991 | INFO     | 
[2025-11-27 03:14:51] 2025-11-27 08:14:05,991 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-27 03:14:51] 2025-11-27 08:14:06,217 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,217 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,217 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,218 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,219 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:14:51] 2025-11-27 08:14:06,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,219 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:14:51] 2025-11-27 08:14:06,219 | INFO     | job 6891106654 has completed (purged errors)
[2025-11-27 03:14:51] 2025-11-27 08:14:06,219 | INFO     | overall cleanup function is called
[2025-11-27 03:14:51] 2025-11-27 08:14:07,431 | INFO     | --- collectZombieJob: --- 10, [705585]
[2025-11-27 03:14:51] 2025-11-27 08:14:07,431 | INFO     | zombie collector waiting for pid 705585
[2025-11-27 03:14:51] 2025-11-27 08:14:07,431 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:14:51] 2025-11-27 08:14:07,431 | INFO     | collected zombie processes
[2025-11-27 03:14:51] 2025-11-27 08:14:07,431 | INFO     | will attempt to kill all subprocesses of pid=705585
[2025-11-27 03:14:51] 2025-11-27 08:14:11,706 | INFO     | PID=689308 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 03:14:51] 2025-11-27 08:14:11,706 | INFO     | .. there are 63 such processes running
[2025-11-27 03:14:51] 2025-11-27 08:14:12,700 | INFO     | process IDs to be killed: [705585] (in reverse order)
[2025-11-27 03:14:51] 2025-11-27 08:14:13,885 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:14:51] 2025-11-27 08:14:13,886 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:14:51] 2025-11-27 08:14:13,941 | INFO     | did not find any defunct processes belonging to 705585
[2025-11-27 03:14:51] 2025-11-27 08:14:14,164 | INFO     | did not find any defunct processes belonging to 705585
[2025-11-27 03:14:51] 2025-11-27 08:14:14,200 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:14:51] 2025-11-27 08:14:14,200 | INFO     | ready for new job
[2025-11-27 03:14:51] 2025-11-27 08:14:14,200 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:14:51] 2025-11-27 08:14:14,249 | INFO     | ***************************************
[2025-11-27 03:14:51] 2025-11-27 08:14:14,250 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:14:51] 2025-11-27 08:14:14,250 | INFO     | ***************************************
[2025-11-27 03:14:51] 2025-11-27 08:14:14,250 | INFO     | 
[2025-11-27 03:14:51] 2025-11-27 08:14:14,312 | INFO     | architecture information:
[2025-11-27 03:14:51] 2025-11-27 08:14:14,327 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:14:51] 2025-11-27 08:14:14,400 | INFO     | cat /etc/os-release:
[2025-11-27 03:14:51] NAME="CentOS Linux"
[2025-11-27 03:14:51] VERSION="7 (Core)"
[2025-11-27 03:14:51] ID="centos"
[2025-11-27 03:14:51] ID_LIKE="rhel fedora"
[2025-11-27 03:14:51] VERSION_ID="7"
[2025-11-27 03:14:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:14:51] ANSI_COLOR="0;31"
[2025-11-27 03:14:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:14:51] HOME_URL="https://www.centos.org/"
[2025-11-27 03:14:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:14:51] 
[2025-11-27 03:14:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:14:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:14:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:14:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:14:51] 
[2025-11-27 03:14:51] 2025-11-27 08:14:14,400 | INFO     | ***************************************
[2025-11-27 03:14:51] 2025-11-27 08:14:14,904 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-27 03:14:51] 2025-11-27 08:14:15,061 | INFO     | sufficient remaining disk space (91358232576 B)
[2025-11-27 03:14:51] 2025-11-27 08:14:15,062 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:14:51] 2025-11-27 08:14:15,062 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:14:51] 2025-11-27 08:14:15,062 | INFO     | update_server=False
[2025-11-27 03:14:51] 2025-11-27 08:14:15,062 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:14:51] 2025-11-27 08:14:15,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:14:51] 2025-11-27 08:14:15,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:14:51] 2025-11-27 08:14:15,124 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 03:14:51] 2025-11-27 08:14:15,124 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 03:14:51] 2025-11-27 08:14:15,124 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:14:51] 2025-11-27 08:14:15,124 | INFO     | will abort loop
[2025-11-27 03:14:51] 2025-11-27 08:14:15,340 | INFO     | all job control threads have been joined
[2025-11-27 03:14:51] 2025-11-27 08:14:16,061 | INFO     | all data control threads have been joined
[2025-11-27 03:14:51] 2025-11-27 08:14:16,069 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:16,085 | INFO     | all payload control threads have been joined
[2025-11-27 03:14:51] 2025-11-27 08:14:16,115 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:16,131 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:16,345 | INFO     | [job] control thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:16,508 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:16,549 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:16,661 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:16,662 | INFO     | [job] validate thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:16,687 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:17,067 | INFO     | [data] control thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:17,071 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:17,091 | INFO     | [payload] control thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:17,470 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:17,580 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:17,635 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:18,548 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:14:51] 2025-11-27 08:14:22,518 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:14:51] 2025-11-27 08:14:22,557 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:14:51] 2025-11-27 08:14:22,780 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140349735970624)>', '<ExcThread(monitor, started 140348785420032)>']
[2025-11-27 03:14:51] 2025-11-27 08:14:27,806 | INFO     | all workflow threads have been joined
[2025-11-27 03:14:51] 2025-11-27 08:14:27,806 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:14:51] 2025-11-27 08:14:27,806 | INFO     | traces error code: 0
[2025-11-27 03:14:51] 2025-11-27 08:14:27,807 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:14:51] 2025-11-27 08:14:49,656 | INFO     | PID=689308 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 03:14:51] 2025-11-27 08:14:49,656 | INFO     | .. there are 63 such processes running
[2025-11-27 03:14:51] 2025-11-27 08:14:49,657 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:14:51] 2025-11-27 08:14:49,658 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:14:51] 2025-11-27 08:14:49,684 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:14:51] 2025-11-27 08:14:49,684 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:14:51] 2025-11-27 08:14:49,684 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 03:14:51] 2025-11-27 08:14:49,684 | INFO     | [monitor] control thread has ended
[2025-11-27 03:14:51] 2025-11-27 08:14:50,268 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:14:51] 2025-11-27 08:14:50,290 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:14:51] 2025-11-27 08:14:50,309 [wrapper] pilotpid: 689308
[2025-11-27 03:14:51] 2025-11-27 08:14:50,326 [wrapper] Pilot exit status: 0
[2025-11-27 03:14:51] 2025-11-27 08:14:50,397 [wrapper] pandaids: 6891106654
[2025-11-27 03:14:51] 2025-11-27 08:14:50,734 [wrapper] cleanup supervisor_pilot  544196 689309
[2025-11-27 03:14:51] 2025-11-27 08:14:50,757 [wrapper] Test setup, not cleaning
[2025-11-27 03:14:51] 2025-11-27 08:14:50,784 [wrapper] apfmon messages muted
[2025-11-27 03:14:51] 2025-11-27 08:14:50,813 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:14:51] 2025-11-27 08:14:50,853 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:14:51]  *** Error codes and diagnostics ***
[2025-11-27 03:14:51]     "exeErrorCode": 0,
[2025-11-27 03:14:51]     "exeErrorDiag": "",
[2025-11-27 03:14:51]     "pilotErrorCode": 0,
[2025-11-27 03:14:51]     "pilotErrorDiag": "",
[2025-11-27 03:14:51]  *** Listing of results directory ***
[2025-11-27 03:14:51] total 1312792
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 03:14:51] -rwx------. 1 boincer umatlas     36292 Nov 18 02:01 runpilot2-wrapper.sh
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:14:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:14 run_atlas
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:14 job.xml
[2025-11-27 03:14:51] -rw-r--r--. 2 boincer umatlas 409245525 Nov 26 00:14 EVNT.47483658._000272.pool.root.1
[2025-11-27 03:14:51] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:14 start_atlas.sh
[2025-11-27 03:14:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:14 shared
[2025-11-27 03:14:51] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:14 input.tar.gz
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:14 boinc_lockfile
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:14 pandaJob.out
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas    991877 Nov 26 00:15 agis_schedconf.cvmfs.json
[2025-11-27 03:14:51] drwx------. 5 boincer umatlas      4096 Nov 26 00:15 pilot3
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas       533 Nov 27 02:56 boinc_task_state.xml
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 03:11 init_data.xml
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas 904205828 Nov 27 03:12 HITS.47483661._002420.pool.root.1
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas      1059 Nov 27 03:13 memory_monitor_summary.json
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas   1516240 Nov 27 03:13 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas   2487096 Nov 27 03:13 log.47483661._002420.job.log.tgz.1
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas      7965 Nov 27 03:14 heartbeat.json
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas        29 Nov 27 03:14 wrapper_checkpoint.txt
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas        95 Nov 27 03:14 pilot_heartbeat.json
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas       892 Nov 27 03:14 pilotlog.txt
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas  10982849 Nov 27 03:14 log.47483661._002420.job.log.1
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas       353 Nov 27 03:14 output.list
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas       620 Nov 27 03:14 runtime_log
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas  13486080 Nov 27 03:14 result.tar.gz
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas      8728 Nov 27 03:14 runtime_log.err
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas       663 Nov 27 03:14 8HRNDmRtUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpRKODmEcqM9n.diag
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 03:14 boinc_mmap_file
[2025-11-27 03:14:51] -rw-r--r--. 1 boincer umatlas     21838 Nov 27 03:14 stderr.txt
[2025-11-27 03:14:51] HITS file was successfully produced:
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas 904205828 Nov 27 03:12 shared/HITS.pool.root.1
[2025-11-27 03:14:51]  *** Contents of shared directory: ***
[2025-11-27 03:14:51] total 1296444
[2025-11-27 03:14:51] -rw-r--r--. 2 boincer umatlas 409245525 Nov 26 00:14 ATLAS.root_0
[2025-11-27 03:14:51] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:14 start_atlas.sh
[2025-11-27 03:14:51] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:14 input.tar.gz
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas 904205828 Nov 27 03:12 HITS.pool.root.1
[2025-11-27 03:14:51] -rw-------. 1 boincer umatlas  13486080 Nov 27 03:14 result.tar.gz
03:15:13 (680400): run_atlas exited; CPU time 264255.723668
03:15:13 (680400): called boinc_finish(0)

</stderr_txt>
]]>

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