Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:52:11 (652249): wrapper (7.7.26015): starting
01:52:11 (652249): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 01:52:11] Arguments: --nthreads 9
[2025-11-26 01:52:11] Threads: 9
[2025-11-26 01:52:11] Checking for CVMFS
[2025-11-26 01:52:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 01:52:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 01:52:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 01:52:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 01:52:12] 2.13.3.0 11334 29714 330728 153312 0 98 26934849 32935937 27827 16776704 0 127993294 99.505 172237981 41111 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 01:52:12] CVMFS is ok
[2025-11-26 01:52:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 01:52:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 01:52:12] Further information can be found at the LHC@home message board.
[2025-11-26 01:52:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 01:52:12] Checking for apptainer binary...
[2025-11-26 01:52:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 01:52:12] Running /usr/bin/apptainer --version
[2025-11-26 01:52:12] apptainer version 1.4.4-1.el9
[2025-11-26 01:52:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 01:52:12] c6-4-5-2.aglt2.org
[2025-11-26 01:52:12] apptainer works
[2025-11-26 01:52:12] Set ATHENA_PROC_NUMBER=9
[2025-11-26 01:52:12] Set ATHENA_CORE_NUMBER=9
[2025-11-26 01:52:12] Starting ATLAS job with PandaID=6891106930
[2025-11-26 01:52:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:12:33]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:12:33] 2025-11-26 15:11:58,801 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3061.0670625
[2025-11-26 10:12:33] 2025-11-26 15:11:58,818 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891106930/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:12:33] 2025-11-26 15:11:58,819 | INFO     | extracted standard info from prmon json
[2025-11-26 10:12:33] 2025-11-26 15:11:58,819 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:12:33] 2025-11-26 15:11:58,819 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:12:33] 2025-11-26 15:11:58,826 | INFO     | fitting pss+swap vs Time
[2025-11-26 10:12:33] 2025-11-26 15:11:58,827 | INFO     | sum of square deviations: 36704503620.03662
[2025-11-26 10:12:33] 2025-11-26 15:11:58,831 | INFO     | sum of deviations: 385386488513.90393
[2025-11-26 10:12:33] 2025-11-26 15:11:58,831 | INFO     | mean x: 1764154922.4256618
[2025-11-26 10:12:33] 2025-11-26 15:11:58,831 | INFO     | mean y: 3031219.83299389
[2025-11-26 10:12:33] 2025-11-26 15:11:58,831 | INFO     | intersect: -18520076401.679806
[2025-11-26 10:12:33] 2025-11-26 15:11:58,832 | INFO     | chi2: 6.247144280361469
[2025-11-26 10:12:33] 2025-11-26 15:11:58,833 | INFO     | sum of square deviations: 35594620971.621346
[2025-11-26 10:12:33] 2025-11-26 15:11:58,837 | INFO     | sum of deviations: 568570674061.9419
[2025-11-26 10:12:33] 2025-11-26 15:11:58,837 | INFO     | mean x: 1764154769.930041
[2025-11-26 10:12:33] 2025-11-26 15:11:58,837 | INFO     | mean y: 3056390.880658436
[2025-11-26 10:12:33] 2025-11-26 15:11:58,837 | INFO     | intersect: -28176669626.94704
[2025-11-26 10:12:33] 2025-11-26 15:11:58,838 | INFO     | chi2: 2.763079575237417
[2025-11-26 10:12:33] 2025-11-26 15:11:58,838 | INFO     | current chi2=2.763079575237417 (change=55.77051767599737 %)
[2025-11-26 10:12:33] 2025-11-26 15:11:58,838 | INFO     | sum of square deviations: 34507313996.053986
[2025-11-26 10:12:33] 2025-11-26 15:11:58,842 | INFO     | sum of deviations: 610365661877.2163
[2025-11-26 10:12:33] 2025-11-26 15:11:58,843 | INFO     | mean x: 1764154617.4324324
[2025-11-26 10:12:33] 2025-11-26 15:11:58,843 | INFO     | mean y: 3062232.5758835757
[2025-11-26 10:12:33] 2025-11-26 15:11:58,843 | INFO     | intersect: -31201319564.454937
[2025-11-26 10:12:33] 2025-11-26 15:11:58,843 | INFO     | chi2: 2.4048044842807794
[2025-11-26 10:12:33] 2025-11-26 15:11:58,843 | INFO     | current chi2=2.4048044842807794 (change=12.966513674361076 %)
[2025-11-26 10:12:33] 2025-11-26 15:11:58,844 | INFO     | right removable region: 480
[2025-11-26 10:12:33] 2025-11-26 15:11:58,844 | INFO     | sum of square deviations: 35594523188.47938
[2025-11-26 10:12:33] 2025-11-26 15:11:58,848 | INFO     | sum of deviations: 244787209069.56598
[2025-11-26 10:12:33] 2025-11-26 15:11:58,849 | INFO     | mean x: 1764155074.9279835
[2025-11-26 10:12:33] 2025-11-26 15:11:58,849 | INFO     | mean y: 3050484.730452675
[2025-11-26 10:12:33] 2025-11-26 15:11:58,849 | INFO     | intersect: -12129226013.843449
[2025-11-26 10:12:33] 2025-11-26 15:11:58,849 | INFO     | chi2: 3.9924622402877
[2025-11-26 10:12:33] 2025-11-26 15:11:58,849 | INFO     | current chi2=3.9924622402877 (change=36.09140334987284 %)
[2025-11-26 10:12:33] 2025-11-26 15:11:58,850 | INFO     | sum of square deviations: 34507118430.053986
[2025-11-26 10:12:33] 2025-11-26 15:11:58,854 | INFO     | sum of deviations: 221368248388.91882
[2025-11-26 10:12:33] 2025-11-26 15:11:58,854 | INFO     | mean x: 1764155227.4324324
[2025-11-26 10:12:33] 2025-11-26 15:11:58,854 | INFO     | mean y: 3053764.2744282745
[2025-11-26 10:12:33] 2025-11-26 15:11:58,854 | INFO     | intersect: -11314261918.704823
[2025-11-26 10:12:33] 2025-11-26 15:11:58,855 | INFO     | chi2: 3.972193264413684
[2025-11-26 10:12:33] 2025-11-26 15:11:58,855 | INFO     | current chi2=3.972193264413684 (change=0.5076810913697055 %)
[2025-11-26 10:12:33] 2025-11-26 15:11:58,855 | INFO     | left removable region: 20
[2025-11-26 10:12:33] 2025-11-26 15:11:58,856 | INFO     | sum of square deviations: 30181954966.29573
[2025-11-26 10:12:33] 2025-11-26 15:11:58,860 | INFO     | sum of deviations: 401668389551.41693
[2025-11-26 10:12:33] 2025-11-26 15:11:58,860 | INFO     | mean x: 1764155196.9391305
[2025-11-26 10:12:33] 2025-11-26 15:11:58,860 | INFO     | mean y: 3091908.4434782607
[2025-11-26 10:12:33] 2025-11-26 15:11:58,860 | INFO     | intersect: -23474690682.664516
[2025-11-26 10:12:33] 2025-11-26 15:11:58,861 | INFO     | chi2: 0.06873833123253772
[2025-11-26 10:12:33] 2025-11-26 15:11:58,861 | INFO     | current memory leak: 13.31 B/s (using 460 data points, chi2=0.07)
[2025-11-26 10:12:33] 2025-11-26 15:11:58,862 | INFO     | could have reported an average CPU frequency of 3105 MHz (20 samples)
[2025-11-26 10:12:33] 2025-11-26 15:11:58,862 | INFO     | ..............................
[2025-11-26 10:12:33] 2025-11-26 15:11:58,862 | INFO     | . Timing measurements:
[2025-11-26 10:12:33] 2025-11-26 15:11:58,862 | INFO     | . get job = 0 s
[2025-11-26 10:12:33] 2025-11-26 15:11:58,862 | INFO     | . initial setup = 2 s
[2025-11-26 10:12:33] 2025-11-26 15:11:58,862 | INFO     | . payload setup = 6 s
[2025-11-26 10:12:33] 2025-11-26 15:11:58,862 | INFO     | . stage-in = 0 s
[2025-11-26 10:12:33] 2025-11-26 15:11:58,862 | INFO     | . payload execution = 29926 s
[2025-11-26 10:12:33] 2025-11-26 15:11:58,863 | INFO     | . stage-out = 4 s
[2025-11-26 10:12:33] 2025-11-26 15:11:58,863 | INFO     | . log creation = 1 s
[2025-11-26 10:12:33] 2025-11-26 15:11:58,863 | INFO     | ..............................
[2025-11-26 10:12:33] 2025-11-26 15:11:59,040 | INFO     | 
[2025-11-26 10:12:33] 2025-11-26 15:11:59,040 | INFO     | job summary report
[2025-11-26 10:12:33] 2025-11-26 15:11:59,040 | INFO     | --------------------------------------------------
[2025-11-26 10:12:33] 2025-11-26 15:11:59,040 | INFO     | PanDA job id: 6891106930
[2025-11-26 10:12:33] 2025-11-26 15:11:59,040 | INFO     | task id: 47483661
[2025-11-26 10:12:33] 2025-11-26 15:11:59,040 | INFO     | errors: (none)
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | pilot state: finished 
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | transexitcode: 0
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | exeerrorcode: 0
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | exeerrordiag: 
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | exitcode: 0
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | exitmsg: OK
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | cpuconsumptiontime: 218094 s
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | nevents: 1000
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | neventsw: 0
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | pid: 663410
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | pgrp: 663410
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | corecount: 9
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | event service: False
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | sizes: {0: 2284304, 6: 2284566, 11: 2284594, 29936: 2323947, 29941: 2332941, 29943: 2332997, 29956: 2333371}
[2025-11-26 10:12:33] 2025-11-26 15:11:59,041 | INFO     | --------------------------------------------------
[2025-11-26 10:12:33] 2025-11-26 15:11:59,042 | INFO     | 
[2025-11-26 10:12:33] 2025-11-26 15:11:59,042 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 10:12:33] 2025-11-26 15:11:59,070 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,070 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,070 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,070 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,070 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,070 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,071 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:12:33] 2025-11-26 15:11:59,072 | INFO     | job 6891106930 has completed (purged errors)
[2025-11-26 10:12:33] 2025-11-26 15:11:59,072 | INFO     | overall cleanup function is called
[2025-11-26 10:12:33] 2025-11-26 15:11:59,378 | INFO     | PID=656037 has CPU usage=14.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:12:33] 2025-11-26 15:11:59,378 | INFO     | .. there are 47 such processes running
[2025-11-26 10:12:33] 2025-11-26 15:12:00,108 | INFO     | --- collectZombieJob: --- 10, [663410]
[2025-11-26 10:12:33] 2025-11-26 15:12:00,108 | INFO     | zombie collector waiting for pid 663410
[2025-11-26 10:12:33] 2025-11-26 15:12:00,108 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:12:33] 2025-11-26 15:12:00,108 | INFO     | collected zombie processes
[2025-11-26 10:12:33] 2025-11-26 15:12:00,108 | INFO     | will attempt to kill all subprocesses of pid=663410
[2025-11-26 10:12:33] 2025-11-26 15:12:00,754 | INFO     | process IDs to be killed: [663410] (in reverse order)
[2025-11-26 10:12:33] 2025-11-26 15:12:01,011 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:12:33] 2025-11-26 15:12:01,011 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:12:33] 2025-11-26 15:12:01,027 | INFO     | did not find any defunct processes belonging to 663410
[2025-11-26 10:12:33] 2025-11-26 15:12:01,123 | INFO     | did not find any defunct processes belonging to 663410
[2025-11-26 10:12:33] 2025-11-26 15:12:01,152 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:12:33] 2025-11-26 15:12:01,152 | INFO     | ready for new job
[2025-11-26 10:12:33] 2025-11-26 15:12:01,152 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:12:33] 2025-11-26 15:12:01,155 | INFO     | ***************************************
[2025-11-26 10:12:33] 2025-11-26 15:12:01,155 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:12:33] 2025-11-26 15:12:01,155 | INFO     | ***************************************
[2025-11-26 10:12:33] 2025-11-26 15:12:01,155 | INFO     | 
[2025-11-26 10:12:33] 2025-11-26 15:12:01,171 | INFO     | architecture information:
[2025-11-26 10:12:33] 2025-11-26 15:12:01,206 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:12:33] 2025-11-26 15:12:01,377 | INFO     | cat /etc/os-release:
[2025-11-26 10:12:33] NAME="CentOS Linux"
[2025-11-26 10:12:33] VERSION="7 (Core)"
[2025-11-26 10:12:33] ID="centos"
[2025-11-26 10:12:33] ID_LIKE="rhel fedora"
[2025-11-26 10:12:33] VERSION_ID="7"
[2025-11-26 10:12:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:12:33] ANSI_COLOR="0;31"
[2025-11-26 10:12:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:12:33] HOME_URL="https://www.centos.org/"
[2025-11-26 10:12:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:12:33] 
[2025-11-26 10:12:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:12:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:12:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:12:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:12:33] 
[2025-11-26 10:12:33] 2025-11-26 15:12:01,377 | INFO     | ***************************************
[2025-11-26 10:12:33] 2025-11-26 15:12:01,881 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 10:12:33] 2025-11-26 15:12:01,898 | INFO     | sufficient remaining disk space (69524783104 B)
[2025-11-26 10:12:33] 2025-11-26 15:12:01,898 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:12:33] 2025-11-26 15:12:01,898 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:12:33] 2025-11-26 15:12:01,898 | INFO     | update_server=False
[2025-11-26 10:12:33] 2025-11-26 15:12:01,898 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:12:33] 2025-11-26 15:12:01,898 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:12:33] 2025-11-26 15:12:02,026 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 10:12:33] 2025-11-26 15:12:02,026 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 10:12:33] 2025-11-26 15:12:02,026 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:12:33] 2025-11-26 15:12:02,026 | INFO     | will abort loop
[2025-11-26 10:12:33] 2025-11-26 15:12:02,211 | INFO     | all payload control threads have been joined
[2025-11-26 10:12:33] 2025-11-26 15:12:02,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:12:33] 2025-11-26 15:12:02,424 | INFO     | all data control threads have been joined
[2025-11-26 10:12:33] 2025-11-26 15:12:02,737 | INFO     | all job control threads have been joined
[2025-11-26 10:12:33] 2025-11-26 15:12:02,924 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:02,935 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:03,032 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:03,217 | INFO     | [payload] control thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:03,430 | INFO     | [data] control thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:03,609 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:03,613 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:03,757 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:03,762 | INFO     | [job] control thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:03,920 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:04,066 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:12:33] 2025-11-26 15:12:04,067 | INFO     | [job] validate thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:04,275 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:04,398 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:04,457 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:05,071 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:05,908 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:12:33] 2025-11-26 15:12:18,043 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:12:33] 2025-11-26 15:12:18,445 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140643943987008)>', '<ExcThread(monitor, started 140643426871040)>']
[2025-11-26 10:12:33] 2025-11-26 15:12:23,472 | INFO     | all workflow threads have been joined
[2025-11-26 10:12:33] 2025-11-26 15:12:23,472 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:12:33] 2025-11-26 15:12:23,472 | INFO     | traces error code: 0
[2025-11-26 10:12:33] 2025-11-26 15:12:23,472 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:12:33] 2025-11-26 15:12:32,360 | INFO     | PID=656037 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 10:12:33] 2025-11-26 15:12:32,361 | INFO     | .. there are 47 such processes running
[2025-11-26 10:12:33] 2025-11-26 15:12:32,361 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:12:33] 2025-11-26 15:12:32,361 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:12:33] 2025-11-26 15:12:32,361 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:12:33] 2025-11-26 15:12:32,361 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:12:33] 2025-11-26 15:12:32,361 | INFO     | [monitor] control thread has ended
[2025-11-26 10:12:33] 2025-11-26 15:12:32,621 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:12:33] 2025-11-26 15:12:32,658 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:12:33] 2025-11-26 15:12:32,738 [wrapper] pilotpid: 656037
[2025-11-26 10:12:33] 2025-11-26 15:12:32,757 [wrapper] Pilot exit status: 0
[2025-11-26 10:12:33] 2025-11-26 15:12:32,863 [wrapper] pandaids: 6891106930
[2025-11-26 10:12:33] 2025-11-26 15:12:33,151 [wrapper] cleanup supervisor_pilot 3046868 656038
[2025-11-26 10:12:33] 2025-11-26 15:12:33,166 [wrapper] Test setup, not cleaning
[2025-11-26 10:12:33] 2025-11-26 15:12:33,186 [wrapper] apfmon messages muted
[2025-11-26 10:12:33] 2025-11-26 15:12:33,207 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:12:33] 2025-11-26 15:12:33,222 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:12:33]  *** Error codes and diagnostics ***
[2025-11-26 10:12:33]     "exeErrorCode": 0,
[2025-11-26 10:12:33]     "exeErrorDiag": "",
[2025-11-26 10:12:33]     "pilotErrorCode": 0,
[2025-11-26 10:12:33]     "pilotErrorDiag": "",
[2025-11-26 10:12:33]  *** Listing of results directory ***
[2025-11-26 10:12:33] total 1335128
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-26 10:12:33] -rwx------. 1 boincer umatlas     36292 Nov 18 02:01 runpilot2-wrapper.sh
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas       100 Nov 26 01:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:12:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 01:52 run_atlas
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas       105 Nov 26 01:52 job.xml
[2025-11-26 10:12:33] -rw-r--r--. 2 boincer umatlas 410750845 Nov 26 01:52 EVNT.47483658._000283.pool.root.1
[2025-11-26 10:12:33] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 01:52 start_atlas.sh
[2025-11-26 10:12:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 01:52 shared
[2025-11-26 10:12:33] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 01:52 input.tar.gz
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas         0 Nov 26 01:52 boinc_lockfile
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 01:52 pandaJob.out
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas    991877 Nov 26 01:52 agis_schedconf.cvmfs.json
[2025-11-26 10:12:33] drwx------. 5 boincer umatlas      4096 Nov 26 01:52 pilot3
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas       532 Nov 26 10:02 boinc_task_state.xml
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas      6876 Nov 26 10:10 init_data.xml
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas 940487005 Nov 26 10:10 HITS.47483661._002525.pool.root.1
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas        95 Nov 26 10:11 pilot_heartbeat.json
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas      1054 Nov 26 10:11 memory_monitor_summary.json
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas   1516240 Nov 26 10:11 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas   1890198 Nov 26 10:11 log.47483661._002525.job.log.tgz.1
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas      8616 Nov 26 10:11 heartbeat.json
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas       822 Nov 26 10:12 pilotlog.txt
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 10:12 boinc_mmap_file
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas        29 Nov 26 10:12 wrapper_checkpoint.txt
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas   4119389 Nov 26 10:12 log.47483661._002525.job.log.1
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas       353 Nov 26 10:12 output.list
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas       620 Nov 26 10:12 runtime_log
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas   6031360 Nov 26 10:12 result.tar.gz
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas      8704 Nov 26 10:12 runtime_log.err
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas       660 Nov 26 10:12 ekUNDmmtUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsSKODmiFWcsm.diag
[2025-11-26 10:12:33] -rw-r--r--. 1 boincer umatlas     21389 Nov 26 10:12 stderr.txt
[2025-11-26 10:12:33] HITS file was successfully produced:
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas 940487005 Nov 26 10:10 shared/HITS.pool.root.1
[2025-11-26 10:12:33]  *** Contents of shared directory: ***
[2025-11-26 10:12:33] total 1326064
[2025-11-26 10:12:33] -rw-r--r--. 2 boincer umatlas 410750845 Nov 26 01:52 ATLAS.root_0
[2025-11-26 10:12:33] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 01:52 start_atlas.sh
[2025-11-26 10:12:33] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 01:52 input.tar.gz
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas 940487005 Nov 26 10:10 HITS.pool.root.1
[2025-11-26 10:12:33] -rw-------. 1 boincer umatlas   6031360 Nov 26 10:12 result.tar.gz
10:12:55 (652249): run_atlas exited; CPU time 218811.157878
10:12:55 (652249): called boinc_finish(0)

</stderr_txt>
]]>

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