Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:39 (366026): wrapper (7.7.26015): starting
00:12:39 (366026): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:12:40] Arguments: --nthreads 8
[2025-11-26 00:12:40] Threads: 8
[2025-11-26 00:12:40] Checking for CVMFS
[2025-11-26 00:12:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:12:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:12:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:12:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:12:42] 2.13.3.0 7030 4933 227916 153310 3 78 25096797 32935937 59292 16776704 0 40210181 99.717 31239951 32394 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:12:42] CVMFS is ok
[2025-11-26 00:12:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:12:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:12:42] Further information can be found at the LHC@home message board.
[2025-11-26 00:12:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:12:42] Checking for apptainer binary...
[2025-11-26 00:12:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:12:42] Running /usr/bin/apptainer --version
[2025-11-26 00:12:42] apptainer version 1.4.4-1.el9
[2025-11-26 00:12:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:12:43] lc-10-10.aglt2.org
[2025-11-26 00:12:43] apptainer works
[2025-11-26 00:12:43] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:12:43] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:12:43] Starting ATLAS job with PandaID=6896716188
[2025-11-26 00:12:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:08:23]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:08:23] 2025-11-27 02:07:44,687 | INFO     | time since job start (75228s) is within the limit (172800.0s)
[2025-11-26 21:08:23] 2025-11-27 02:07:45,046 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 21:08:23] 2025-11-27 02:07:45,057 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2749.9996145833325
[2025-11-26 21:08:23] 2025-11-27 02:07:45,091 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6896716188/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:08:23] 2025-11-27 02:07:45,092 | INFO     | extracted standard info from prmon json
[2025-11-26 21:08:23] 2025-11-27 02:07:45,092 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:08:23] 2025-11-27 02:07:45,092 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:08:23] 2025-11-27 02:07:45,134 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:08:23] 2025-11-27 02:07:45,136 | INFO     | sum of square deviations: 576997841548.5536
[2025-11-26 21:08:23] 2025-11-27 02:07:45,233 | INFO     | sum of deviations: 3202369927286.351
[2025-11-26 21:08:23] 2025-11-27 02:07:45,233 | INFO     | mean x: 1764171686.3634145
[2025-11-26 21:08:23] 2025-11-27 02:07:45,233 | INFO     | mean y: 2857742.6300813006
[2025-11-26 21:08:23] 2025-11-27 02:07:45,233 | INFO     | intersect: -9788392671.440742
[2025-11-26 21:08:23] 2025-11-27 02:07:45,235 | INFO     | chi2: 12.541074701186835
[2025-11-26 21:08:23] 2025-11-27 02:07:45,243 | INFO     | sum of square deviations: 569990232443.6201
[2025-11-26 21:08:23] 2025-11-27 02:07:45,313 | INFO     | sum of deviations: 3609822873439.9854
[2025-11-26 21:08:23] 2025-11-27 02:07:45,313 | INFO     | mean x: 1764171533.8710203
[2025-11-26 21:08:23] 2025-11-27 02:07:45,313 | INFO     | mean y: 2866610.177142857
[2025-11-26 21:08:23] 2025-11-27 02:07:45,314 | INFO     | intersect: -11169863014.21906
[2025-11-26 21:08:23] 2025-11-27 02:07:45,315 | INFO     | chi2: 9.478754973577914
[2025-11-26 21:08:23] 2025-11-27 02:07:45,315 | INFO     | current chi2=9.478754973577914 (change=24.418319805711036 %)
[2025-11-26 21:08:23] 2025-11-27 02:07:45,315 | INFO     | right removable region: 1224
[2025-11-26 21:08:23] 2025-11-27 02:07:45,321 | INFO     | sum of square deviations: 569988834323.62
[2025-11-26 21:08:23] 2025-11-27 02:07:45,414 | INFO     | sum of deviations: 2732162807548.7207
[2025-11-26 21:08:23] 2025-11-27 02:07:45,415 | INFO     | mean x: 1764171838.8710203
[2025-11-26 21:08:23] 2025-11-27 02:07:45,415 | INFO     | mean y: 2867971.276734694
[2025-11-26 21:08:23] 2025-11-27 02:07:45,415 | INFO     | intersect: -8453446247.593742
[2025-11-26 21:08:23] 2025-11-27 02:07:45,417 | INFO     | chi2: 8.666392753686594
[2025-11-26 21:08:23] 2025-11-27 02:07:45,417 | INFO     | current chi2=8.666392753686594 (change=30.89593228508205 %)
[2025-11-26 21:08:23] 2025-11-27 02:07:45,427 | INFO     | sum of square deviations: 563036804911.046
[2025-11-26 21:08:23] 2025-11-27 02:07:45,492 | INFO     | sum of deviations: 2335785805593.1123
[2025-11-26 21:08:23] 2025-11-27 02:07:45,492 | INFO     | mean x: 1764171991.3786886
[2025-11-26 21:08:23] 2025-11-27 02:07:45,492 | INFO     | mean y: 2876663.473770492
[2025-11-26 21:08:23] 2025-11-27 02:07:45,492 | INFO     | intersect: -7315877386.2518215
[2025-11-26 21:08:23] 2025-11-27 02:07:45,494 | INFO     | chi2: 5.9886887884895295
[2025-11-26 21:08:23] 2025-11-27 02:07:45,498 | INFO     | current chi2=5.9886887884895295 (change=30.897560741843797 %)
[2025-11-26 21:08:23] 2025-11-27 02:07:45,500 | INFO     | sum of square deviations: 556141817823.404
[2025-11-26 21:08:23] 2025-11-27 02:07:45,538 | INFO     | sum of deviations: 2155472949071.1519
[2025-11-26 21:08:23] 2025-11-27 02:07:45,538 | INFO     | mean x: 1764172143.8831277
[2025-11-26 21:08:23] 2025-11-27 02:07:45,538 | INFO     | mean y: 2880647.402469136
[2025-11-26 21:08:23] 2025-11-27 02:07:45,539 | INFO     | intersect: -6834629519.567961
[2025-11-26 21:08:23] 2025-11-27 02:07:45,540 | INFO     | chi2: 5.3949492167031075
[2025-11-26 21:08:23] 2025-11-27 02:07:45,540 | INFO     | current chi2=5.3949492167031075 (change=9.914350081567276 %)
[2025-11-26 21:08:23] 2025-11-27 02:07:45,540 | INFO     | left removable region: 30
[2025-11-26 21:08:23] 2025-11-27 02:07:45,542 | INFO     | sum of square deviations: 527799263440.23773
[2025-11-26 21:08:23] 2025-11-27 02:07:45,570 | INFO     | sum of deviations: 2426050720474.094
[2025-11-26 21:08:23] 2025-11-27 02:07:45,570 | INFO     | mean x: 1764172418.39866
[2025-11-26 21:08:23] 2025-11-27 02:07:45,570 | INFO     | mean y: 2897215.8065326633
[2025-11-26 21:08:23] 2025-11-27 02:07:45,570 | INFO     | intersect: -8106192855.292461
[2025-11-26 21:08:23] 2025-11-27 02:07:45,572 | INFO     | chi2: 1.2882629835073414
[2025-11-26 21:08:23] 2025-11-27 02:07:45,572 | INFO     | current memory leak: 4.60 B/s (using 1194 data points, chi2=1.29)
[2025-11-26 21:08:23] 2025-11-27 02:07:45,573 | INFO     | could have reported an average CPU frequency of 2731 MHz (44 samples)
[2025-11-26 21:08:23] 2025-11-27 02:07:45,573 | INFO     | ..............................
[2025-11-26 21:08:23] 2025-11-27 02:07:45,573 | INFO     | . Timing measurements:
[2025-11-26 21:08:23] 2025-11-27 02:07:45,573 | INFO     | . get job = 0 s
[2025-11-26 21:08:23] 2025-11-27 02:07:45,573 | INFO     | . initial setup = 6 s
[2025-11-26 21:08:23] 2025-11-27 02:07:45,573 | INFO     | . payload setup = 51 s
[2025-11-26 21:08:23] 2025-11-27 02:07:45,574 | INFO     | . stage-in = 0 s
[2025-11-26 21:08:23] 2025-11-27 02:07:45,574 | INFO     | . payload execution = 75068 s
[2025-11-26 21:08:23] 2025-11-27 02:07:45,574 | INFO     | . stage-out = 7 s
[2025-11-26 21:08:23] 2025-11-27 02:07:45,574 | INFO     | . log creation = 2 s
[2025-11-26 21:08:23] 2025-11-27 02:07:45,574 | INFO     | ..............................
[2025-11-26 21:08:23] 2025-11-27 02:07:45,694 | INFO     | 
[2025-11-26 21:08:23] 2025-11-27 02:07:45,694 | INFO     | job summary report
[2025-11-26 21:08:23] 2025-11-27 02:07:45,694 | INFO     | --------------------------------------------------
[2025-11-26 21:08:23] 2025-11-27 02:07:45,694 | INFO     | PanDA job id: 6896716188
[2025-11-26 21:08:23] 2025-11-27 02:07:45,694 | INFO     | task id: 47556161
[2025-11-26 21:08:23] 2025-11-27 02:07:45,694 | INFO     | errors: (none)
[2025-11-26 21:08:23] 2025-11-27 02:07:45,694 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:08:23] 2025-11-27 02:07:45,694 | INFO     | pilot state: finished 
[2025-11-26 21:08:23] 2025-11-27 02:07:45,694 | INFO     | transexitcode: 0
[2025-11-26 21:08:23] 2025-11-27 02:07:45,694 | INFO     | exeerrorcode: 0
[2025-11-26 21:08:23] 2025-11-27 02:07:45,694 | INFO     | exeerrordiag: 
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | exitcode: 0
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | exitmsg: OK
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | cpuconsumptiontime: 260245 s
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | nevents: 1000
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | neventsw: 0
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | pid: 414035
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | pgrp: 414035
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | corecount: 8
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | event service: False
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | sizes: {0: 2284037, 1: 2284121, 2: 2284320, 3: 2284320, 14: 2284348, 25: 2284376, 34: 2284794, 36: 2284822, 75124: 2343565, 75125: 2343564, 75133: 2352952, 75159: 
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | --------------------------------------------------
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | 
[2025-11-26 21:08:23] 2025-11-27 02:07:45,695 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-26 21:08:23] 2025-11-27 02:07:45,736 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,737 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,737 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,737 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,737 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,737 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,737 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,737 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,737 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,737 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,737 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,737 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,738 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,738 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,738 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,738 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,738 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,738 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:08:23] 2025-11-27 02:07:45,738 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,738 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:08:23] 2025-11-27 02:07:45,738 | INFO     | job 6896716188 has completed (purged errors)
[2025-11-26 21:08:23] 2025-11-27 02:07:45,738 | INFO     | overall cleanup function is called
[2025-11-26 21:08:23] 2025-11-27 02:07:46,812 | INFO     | --- collectZombieJob: --- 10, [414035]
[2025-11-26 21:08:23] 2025-11-27 02:07:46,812 | INFO     | zombie collector waiting for pid 414035
[2025-11-26 21:08:23] 2025-11-27 02:07:46,813 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:08:23] 2025-11-27 02:07:46,813 | INFO     | collected zombie processes
[2025-11-26 21:08:23] 2025-11-27 02:07:46,813 | INFO     | will attempt to kill all subprocesses of pid=414035
[2025-11-26 21:08:23] 2025-11-27 02:07:48,729 | INFO     | PID=377811 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 21:08:23] 2025-11-27 02:07:48,729 | INFO     | .. there are 95 such processes running
[2025-11-26 21:08:23] 2025-11-27 02:07:49,081 | INFO     | process IDs to be killed: [414035] (in reverse order)
[2025-11-26 21:08:23] 2025-11-27 02:07:49,476 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:08:23] 2025-11-27 02:07:49,480 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:08:23] 2025-11-27 02:07:49,542 | INFO     | did not find any defunct processes belonging to 414035
[2025-11-26 21:08:23] 2025-11-27 02:07:49,601 | INFO     | did not find any defunct processes belonging to 414035
[2025-11-26 21:08:23] 2025-11-27 02:07:49,606 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:08:23] 2025-11-27 02:07:49,607 | INFO     | ready for new job
[2025-11-26 21:08:23] 2025-11-27 02:07:49,607 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:08:23] 2025-11-27 02:07:49,620 | INFO     | ***************************************
[2025-11-26 21:08:23] 2025-11-27 02:07:49,621 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:08:23] 2025-11-27 02:07:49,621 | INFO     | ***************************************
[2025-11-26 21:08:23] 2025-11-27 02:07:49,621 | INFO     | 
[2025-11-26 21:08:23] 2025-11-27 02:07:49,630 | INFO     | architecture information:
[2025-11-26 21:08:23] 2025-11-27 02:07:49,631 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:08:23] 2025-11-27 02:07:49,652 | INFO     | cat /etc/os-release:
[2025-11-26 21:08:23] NAME="CentOS Linux"
[2025-11-26 21:08:23] VERSION="7 (Core)"
[2025-11-26 21:08:23] ID="centos"
[2025-11-26 21:08:23] ID_LIKE="rhel fedora"
[2025-11-26 21:08:23] VERSION_ID="7"
[2025-11-26 21:08:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:08:23] ANSI_COLOR="0;31"
[2025-11-26 21:08:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:08:23] HOME_URL="https://www.centos.org/"
[2025-11-26 21:08:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:08:23] 
[2025-11-26 21:08:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:08:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:08:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:08:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:08:23] 
[2025-11-26 21:08:23] 2025-11-27 02:07:49,653 | INFO     | ***************************************
[2025-11-26 21:08:23] 2025-11-27 02:07:50,158 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-26 21:08:23] 2025-11-27 02:07:50,181 | INFO     | sufficient remaining disk space (88048926720 B)
[2025-11-26 21:08:23] 2025-11-27 02:07:50,182 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:08:23] 2025-11-27 02:07:50,186 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:08:23] 2025-11-27 02:07:50,187 | INFO     | update_server=False
[2025-11-26 21:08:23] 2025-11-27 02:07:50,187 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:08:23] 2025-11-27 02:07:50,187 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:08:23] 2025-11-27 02:07:50,187 | INFO     | aborting loop
[2025-11-26 21:08:23] 2025-11-27 02:07:50,308 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:08:23] 2025-11-27 02:07:50,718 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:08:23] 2025-11-27 02:07:50,899 | INFO     | all data control threads have been joined
[2025-11-26 21:08:23] 2025-11-27 02:07:51,193 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:51,194 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:51,366 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:51,367 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:51,420 | INFO     | all payload control threads have been joined
[2025-11-26 21:08:23] 2025-11-27 02:07:51,726 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:51,748 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:51,792 | INFO     | all job control threads have been joined
[2025-11-26 21:08:23] 2025-11-27 02:07:51,905 | INFO     | [data] control thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:51,988 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:52,001 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:52,098 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:52,318 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:52,426 | INFO     | [payload] control thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:52,450 | INFO     | [job] validate thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:52,639 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:52,802 | INFO     | [job] control thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:07:53,450 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:08:23] 2025-11-27 02:07:57,459 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:08:23] 2025-11-27 02:08:16,148 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:08:23] 2025-11-27 02:08:16,894 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140271512483648)>', '<ExcThread(monitor, started 140271230617344)>']
[2025-11-26 21:08:23] 2025-11-27 02:08:21,947 | INFO     | all workflow threads have been joined
[2025-11-26 21:08:23] 2025-11-27 02:08:21,947 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:08:23] 2025-11-27 02:08:21,948 | INFO     | traces error code: 0
[2025-11-26 21:08:23] 2025-11-27 02:08:21,948 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:08:23] 2025-11-27 02:08:22,254 | INFO     | PID=377811 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 21:08:23] 2025-11-27 02:08:22,254 | INFO     | .. there are 95 such processes running
[2025-11-26 21:08:23] 2025-11-27 02:08:22,255 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:08:23] 2025-11-27 02:08:22,255 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:08:23] 2025-11-27 02:08:22,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:08:23] 2025-11-27 02:08:22,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:08:23] 2025-11-27 02:08:22,256 | INFO     | [monitor] control thread has ended
[2025-11-26 21:08:23] 2025-11-27 02:08:22,455 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:08:23] 2025-11-27 02:08:22,476 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:08:23] 2025-11-27 02:08:22,488 [wrapper] pilotpid: 377811
[2025-11-26 21:08:23] 2025-11-27 02:08:22,492 [wrapper] Pilot exit status: 0
[2025-11-26 21:08:23] 2025-11-27 02:08:22,521 [wrapper] pandaids: 6896716188
[2025-11-26 21:08:23] 2025-11-27 02:08:22,683 [wrapper] cleanup supervisor_pilot 1116532 377812
[2025-11-26 21:08:23] 2025-11-27 02:08:22,701 [wrapper] Test setup, not cleaning
[2025-11-26 21:08:23] 2025-11-27 02:08:22,704 [wrapper] apfmon messages muted
[2025-11-26 21:08:23] 2025-11-27 02:08:22,722 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:08:23] 2025-11-27 02:08:22,738 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:08:23]  *** Error codes and diagnostics ***
[2025-11-26 21:08:23]     "exeErrorCode": 0,
[2025-11-26 21:08:23]     "exeErrorDiag": "",
[2025-11-26 21:08:23]     "pilotErrorCode": 0,
[2025-11-26 21:08:23]     "pilotErrorDiag": "",
[2025-11-26 21:08:23]  *** Listing of results directory ***
[2025-11-26 21:08:23] total 1330416
[2025-11-26 21:08:23] -rwx------. 1 boincer umatlas     36292 Nov 25 03:00 runpilot2-wrapper.sh
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 03:00 queuedata.json
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 03:00 pilot3.tar.gz
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:08:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:12 run_atlas
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:12 job.xml
[2025-11-26 21:08:23] -rw-r--r--. 2 boincer umatlas 411537075 Nov 26 00:12 EVNT.47483658._002137.pool.root.1
[2025-11-26 21:08:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-26 21:08:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:12 shared
[2025-11-26 21:08:23] -rw-r--r--. 2 boincer umatlas    590094 Nov 26 00:12 input.tar.gz
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:12 boinc_lockfile
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:12 pandaJob.out
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas        57 Nov 26 00:12 setup.sh.local
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas    991877 Nov 26 00:13 agis_schedconf.cvmfs.json
[2025-11-26 21:08:23] drwx------. 5 boincer umatlas      4096 Nov 26 00:13 pilot3
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:54 boinc_task_state.xml
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas      6886 Nov 26 21:01 init_data.xml
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas 925278699 Nov 26 21:06 HITS.47556161._001202.pool.root.1
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas      1059 Nov 26 21:07 memory_monitor_summary.json
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:07 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas   2247765 Nov 26 21:07 log.47556161._001202.job.log.tgz.1
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas      8621 Nov 26 21:07 heartbeat.json
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 21:08 boinc_mmap_file
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas        29 Nov 26 21:08 wrapper_checkpoint.txt
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas        95 Nov 26 21:08 pilot_heartbeat.json
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas       822 Nov 26 21:08 pilotlog.txt
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas   8557112 Nov 26 21:08 log.47556161._001202.job.log.1
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas       353 Nov 26 21:08 output.list
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:08 runtime_log
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas  10823680 Nov 26 21:08 result.tar.gz
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas      9361 Nov 26 21:08 runtime_log.err
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas       660 Nov 26 21:08 hoUMDmQ92h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGOJKDmq8A2Ko.diag
[2025-11-26 21:08:23] -rw-r--r--. 1 boincer umatlas     21433 Nov 26 21:08 stderr.txt
[2025-11-26 21:08:23] HITS file was successfully produced:
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas 925278699 Nov 26 21:06 shared/HITS.pool.root.1
[2025-11-26 21:08:23]  *** Contents of shared directory: ***
[2025-11-26 21:08:23] total 1316664
[2025-11-26 21:08:23] -rw-r--r--. 2 boincer umatlas 411537075 Nov 26 00:12 ATLAS.root_0
[2025-11-26 21:08:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-26 21:08:23] -rw-r--r--. 2 boincer umatlas    590094 Nov 26 00:12 input.tar.gz
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas 925278699 Nov 26 21:06 HITS.pool.root.1
[2025-11-26 21:08:23] -rw-------. 1 boincer umatlas  10823680 Nov 26 21:08 result.tar.gz
21:08:24 (366026): run_atlas exited; CPU time 264521.267672
21:08:24 (366026): called boinc_finish(0)

</stderr_txt>
]]>

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