Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:33:26 (3064518): wrapper (7.7.26015): starting
10:33:26 (3064518): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 10:33:26] Arguments: --nthreads 8
[2025-11-26 10:33:26] Threads: 8
[2025-11-26 10:33:26] Checking for CVMFS
[2025-11-26 10:33:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 10:33:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 10:33:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 10:33:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 10:33:27] 2.13.2.0 8544 34563 177012 153326 0 367 39469743 40960001 21714 16776704 0 73284753 99.796 37399236 38252 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 10:33:27] CVMFS is ok
[2025-11-26 10:33:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 10:33:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 10:33:27] Further information can be found at the LHC@home message board.
[2025-11-26 10:33:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 10:33:27] Checking for apptainer binary...
[2025-11-26 10:33:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 10:33:27] Running /usr/bin/apptainer --version
[2025-11-26 10:33:27] apptainer version 1.4.4-1.el9
[2025-11-26 10:33:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 10:33:27] c-212-10.aglt2.org
[2025-11-26 10:33:27] apptainer works
[2025-11-26 10:33:27] Set ATHENA_PROC_NUMBER=8
[2025-11-26 10:33:27] Set ATHENA_CORE_NUMBER=8
[2025-11-26 10:33:27] Starting ATLAS job with PandaID=6896716196
[2025-11-26 10:33:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:43:09]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:43:09] 2025-11-27 12:42:36,694 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:43:09] 2025-11-27 12:42:36,694 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:43:09] 2025-11-27 12:42:36,714 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:43:09] 2025-11-27 12:42:36,715 | INFO     | sum of square deviations: 601289839301.7896
[2025-11-27 07:43:09] 2025-11-27 12:42:36,742 | INFO     | sum of deviations: 4641796216408.608
[2025-11-27 07:43:09] 2025-11-27 12:42:36,743 | INFO     | mean x: 1764209281.0705693
[2025-11-27 07:43:09] 2025-11-27 12:42:36,743 | INFO     | mean y: 2897211.765838011
[2025-11-27 07:43:09] 2025-11-27 12:42:36,743 | INFO     | intersect: -13616325051.05404
[2025-11-27 07:43:09] 2025-11-27 12:42:36,744 | INFO     | chi2: 8.85632314042593
[2025-11-27 07:43:09] 2025-11-27 12:42:36,745 | INFO     | sum of square deviations: 594086474193.5361
[2025-11-27 07:43:09] 2025-11-27 12:42:36,773 | INFO     | sum of deviations: 5065290257510.922
[2025-11-27 07:43:09] 2025-11-27 12:42:36,774 | INFO     | mean x: 1764209128.5748792
[2025-11-27 07:43:09] 2025-11-27 12:42:36,774 | INFO     | mean y: 2906179.086956522
[2025-11-27 07:43:09] 2025-11-27 12:42:36,774 | INFO     | intersect: -15039064475.627872
[2025-11-27 07:43:09] 2025-11-27 12:42:36,775 | INFO     | chi2: 5.664854499824318
[2025-11-27 07:43:09] 2025-11-27 12:42:36,775 | INFO     | current chi2=5.664854499824318 (change=36.03604554618954 %)
[2025-11-27 07:43:09] 2025-11-27 12:42:36,776 | INFO     | sum of square deviations: 586940726210.5491
[2025-11-27 07:43:09] 2025-11-27 12:42:36,807 | INFO     | sum of deviations: 5120852372796.617
[2025-11-27 07:43:09] 2025-11-27 12:42:36,807 | INFO     | mean x: 1764208976.0776072
[2025-11-27 07:43:09] 2025-11-27 12:42:36,807 | INFO     | mean y: 2907361.8164915117
[2025-11-27 07:43:09] 2025-11-27 12:42:36,808 | INFO     | intersect: -15389198378.713278
[2025-11-27 07:43:09] 2025-11-27 12:42:36,809 | INFO     | chi2: 5.421455821720322
[2025-11-27 07:43:09] 2025-11-27 12:42:36,809 | INFO     | current chi2=5.421455821720322 (change=4.296644831946601 %)
[2025-11-27 07:43:09] 2025-11-27 12:42:36,809 | INFO     | right removable region: 1236
[2025-11-27 07:43:09] 2025-11-27 12:42:36,810 | INFO     | sum of square deviations: 594085659843.5363
[2025-11-27 07:43:09] 2025-11-27 12:42:36,842 | INFO     | sum of deviations: 4193359772769.9453
[2025-11-27 07:43:09] 2025-11-27 12:42:36,842 | INFO     | mean x: 1764209433.5748792
[2025-11-27 07:43:09] 2025-11-27 12:42:36,842 | INFO     | mean y: 2906702.946859903
[2025-11-27 07:43:09] 2025-11-27 12:42:36,842 | INFO     | intersect: -12449783825.625307
[2025-11-27 07:43:09] 2025-11-27 12:42:36,843 | INFO     | chi2: 5.6331398277518385
[2025-11-27 07:43:09] 2025-11-27 12:42:36,843 | INFO     | current chi2=5.6331398277518385 (change=36.39414756628989 %)
[2025-11-27 07:43:09] 2025-11-27 12:42:36,844 | INFO     | sum of square deviations: 586939248910.2358
[2025-11-27 07:43:09] 2025-11-27 12:42:36,873 | INFO     | sum of deviations: 3867027899348.22
[2025-11-27 07:43:09] 2025-11-27 12:42:36,873 | INFO     | mean x: 1764209586.0792239
[2025-11-27 07:43:09] 2025-11-27 12:42:36,874 | INFO     | mean y: 2913664.02829426
[2025-11-27 07:43:09] 2025-11-27 12:42:36,874 | INFO     | intersect: -11620517044.23109
[2025-11-27 07:43:09] 2025-11-27 12:42:36,875 | INFO     | chi2: 4.06056038134415
[2025-11-27 07:43:09] 2025-11-27 12:42:36,875 | INFO     | current chi2=4.06056038134415 (change=27.916570411768006 %)
[2025-11-27 07:43:09] 2025-11-27 12:42:36,876 | INFO     | sum of square deviations: 579850600069.8832
[2025-11-27 07:43:09] 2025-11-27 12:42:36,905 | INFO     | sum of deviations: 3777756459641.8633
[2025-11-27 07:43:09] 2025-11-27 12:42:36,906 | INFO     | mean x: 1764209738.581169
[2025-11-27 07:43:09] 2025-11-27 12:42:36,906 | INFO     | mean y: 2915584.3563311687
[2025-11-27 07:43:09] 2025-11-27 12:42:36,906 | INFO     | intersect: -11491001530.301931
[2025-11-27 07:43:09] 2025-11-27 12:42:36,907 | INFO     | chi2: 4.030289827642678
[2025-11-27 07:43:09] 2025-11-27 12:42:36,907 | INFO     | current chi2=4.030289827642678 (change=0.745477245962088 %)
[2025-11-27 07:43:09] 2025-11-27 12:42:36,907 | INFO     | left removable region: 30
[2025-11-27 07:43:09] 2025-11-27 12:42:36,908 | INFO     | sum of square deviations: 543909546365.6483
[2025-11-27 07:43:09] 2025-11-27 12:42:36,936 | INFO     | sum of deviations: 4033964991774.3745
[2025-11-27 07:43:09] 2025-11-27 12:42:36,936 | INFO     | mean x: 1764209860.5903814
[2025-11-27 07:43:09] 2025-11-27 12:42:36,936 | INFO     | mean y: 2931003.5149253733
[2025-11-27 07:43:09] 2025-11-27 12:42:36,936 | INFO     | intersect: -13081525526.653124
[2025-11-27 07:43:09] 2025-11-27 12:42:36,938 | INFO     | chi2: 0.5284228656120763
[2025-11-27 07:43:09] 2025-11-27 12:42:36,938 | INFO     | current memory leak: 7.42 B/s (using 1206 data points, chi2=0.53)
[2025-11-27 07:43:09] 2025-11-27 12:42:36,939 | INFO     | could have reported an average CPU frequency of 3001 MHz (45 samples)
[2025-11-27 07:43:09] 2025-11-27 12:42:36,939 | INFO     | ..............................
[2025-11-27 07:43:09] 2025-11-27 12:42:36,939 | INFO     | . Timing measurements:
[2025-11-27 07:43:09] 2025-11-27 12:42:36,939 | INFO     | . get job = 0 s
[2025-11-27 07:43:09] 2025-11-27 12:42:36,939 | INFO     | . initial setup = 4 s
[2025-11-27 07:43:09] 2025-11-27 12:42:36,939 | INFO     | . payload setup = 15 s
[2025-11-27 07:43:09] 2025-11-27 12:42:36,940 | INFO     | . stage-in = 0 s
[2025-11-27 07:43:09] 2025-11-27 12:42:36,940 | INFO     | . payload execution = 76072 s
[2025-11-27 07:43:09] 2025-11-27 12:42:36,940 | INFO     | . stage-out = 4 s
[2025-11-27 07:43:09] 2025-11-27 12:42:36,940 | INFO     | . log creation = 1 s
[2025-11-27 07:43:09] 2025-11-27 12:42:36,940 | INFO     | ..............................
[2025-11-27 07:43:09] 2025-11-27 12:42:37,093 | INFO     | 
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | job summary report
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | --------------------------------------------------
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | PanDA job id: 6896716196
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | task id: 47556161
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | errors: (none)
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | pilot state: finished 
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | transexitcode: 0
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | exeerrorcode: 0
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | exeerrordiag: 
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | exitcode: 0
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | exitmsg: OK
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | cpuconsumptiontime: 213364 s
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | nevents: 1000
[2025-11-27 07:43:09] 2025-11-27 12:42:37,094 | INFO     | neventsw: 0
[2025-11-27 07:43:09] 2025-11-27 12:42:37,095 | INFO     | pid: 3077539
[2025-11-27 07:43:09] 2025-11-27 12:42:37,095 | INFO     | pgrp: 3077539
[2025-11-27 07:43:09] 2025-11-27 12:42:37,095 | INFO     | corecount: 8
[2025-11-27 07:43:09] 2025-11-27 12:42:37,095 | INFO     | event service: False
[2025-11-27 07:43:09] 2025-11-27 12:42:37,095 | INFO     | sizes: {0: 2283385, 1: 2284241, 2: 2284241, 12: 2284559, 76092: 2345107, 76096: 2354101, 76099: 2354285, 76108: 2354531}
[2025-11-27 07:43:09] 2025-11-27 12:42:37,095 | INFO     | --------------------------------------------------
[2025-11-27 07:43:09] 2025-11-27 12:42:37,095 | INFO     | 
[2025-11-27 07:43:09] 2025-11-27 12:42:37,095 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 07:43:09] 2025-11-27 12:42:37,129 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,129 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,129 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,129 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,129 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,129 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,129 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,129 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,129 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,129 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | job 6896716196 has completed (purged errors)
[2025-11-27 07:43:09] 2025-11-27 12:42:37,130 | INFO     | overall cleanup function is called
[2025-11-27 07:43:09] 2025-11-27 12:42:38,146 | INFO     | --- collectZombieJob: --- 10, [3077539]
[2025-11-27 07:43:09] 2025-11-27 12:42:38,146 | INFO     | zombie collector waiting for pid 3077539
[2025-11-27 07:43:09] 2025-11-27 12:42:38,146 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:43:09] 2025-11-27 12:42:38,146 | INFO     | collected zombie processes
[2025-11-27 07:43:09] 2025-11-27 12:42:38,146 | INFO     | will attempt to kill all subprocesses of pid=3077539
[2025-11-27 07:43:09] 2025-11-27 12:42:38,530 | INFO     | process IDs to be killed: [3077539] (in reverse order)
[2025-11-27 07:43:09] 2025-11-27 12:42:38,668 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:43:09] 2025-11-27 12:42:38,669 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:43:09] 2025-11-27 12:42:38,687 | INFO     | did not find any defunct processes belonging to 3077539
[2025-11-27 07:43:09] 2025-11-27 12:42:38,705 | INFO     | did not find any defunct processes belonging to 3077539
[2025-11-27 07:43:09] 2025-11-27 12:42:38,707 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:43:09] 2025-11-27 12:42:38,707 | INFO     | ready for new job
[2025-11-27 07:43:09] 2025-11-27 12:42:38,707 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:43:09] 2025-11-27 12:42:38,713 | INFO     | ***************************************
[2025-11-27 07:43:09] 2025-11-27 12:42:38,713 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:43:09] 2025-11-27 12:42:38,713 | INFO     | ***************************************
[2025-11-27 07:43:09] 2025-11-27 12:42:38,713 | INFO     | 
[2025-11-27 07:43:09] 2025-11-27 12:42:38,719 | INFO     | architecture information:
[2025-11-27 07:43:09] 2025-11-27 12:42:38,720 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:43:09] 2025-11-27 12:42:38,737 | INFO     | cat /etc/os-release:
[2025-11-27 07:43:09] NAME="CentOS Linux"
[2025-11-27 07:43:09] VERSION="7 (Core)"
[2025-11-27 07:43:09] ID="centos"
[2025-11-27 07:43:09] ID_LIKE="rhel fedora"
[2025-11-27 07:43:09] VERSION_ID="7"
[2025-11-27 07:43:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:43:09] ANSI_COLOR="0;31"
[2025-11-27 07:43:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:43:09] HOME_URL="https://www.centos.org/"
[2025-11-27 07:43:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:43:09] 
[2025-11-27 07:43:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:43:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:43:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:43:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:43:09] 
[2025-11-27 07:43:09] 2025-11-27 12:42:38,738 | INFO     | ***************************************
[2025-11-27 07:43:09] 2025-11-27 12:42:39,244 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 07:43:09] 2025-11-27 12:42:39,266 | INFO     | sufficient remaining disk space (120866209792 B)
[2025-11-27 07:43:09] 2025-11-27 12:42:39,267 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:43:09] 2025-11-27 12:42:39,267 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:43:09] 2025-11-27 12:42:39,267 | INFO     | update_server=False
[2025-11-27 07:43:09] 2025-11-27 12:42:39,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:43:09] 2025-11-27 12:42:39,268 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:43:09] 2025-11-27 12:42:39,268 | INFO     | aborting loop
[2025-11-27 07:43:09] 2025-11-27 12:42:39,268 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:43:09] 2025-11-27 12:42:39,269 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:43:09] 2025-11-27 12:42:39,830 | INFO     | all payload control threads have been joined
[2025-11-27 07:43:09] 2025-11-27 12:42:40,034 | INFO     | all job control threads have been joined
[2025-11-27 07:43:09] 2025-11-27 12:42:40,273 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:40,274 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:40,293 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:40,369 | INFO     | all data control threads have been joined
[2025-11-27 07:43:09] 2025-11-27 12:42:40,769 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:40,836 | INFO     | [payload] control thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:40,853 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:41,040 | INFO     | [job] control thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:41,099 | INFO     | [job] validate thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:41,273 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:41,343 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:41,376 | INFO     | [data] control thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:41,473 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:41,494 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:41,594 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:42,048 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:43:09] 2025-11-27 12:42:43,054 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:42:43,278 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:43:09] 2025-11-27 12:43:00,715 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:43:09] 2025-11-27 12:43:00,759 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140076758865728)>', '<ExcThread(monitor, started 140076130498304)>']
[2025-11-27 07:43:09] 2025-11-27 12:43:05,798 | INFO     | all workflow threads have been joined
[2025-11-27 07:43:09] 2025-11-27 12:43:05,798 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:43:09] 2025-11-27 12:43:05,799 | INFO     | traces error code: 0
[2025-11-27 07:43:09] 2025-11-27 12:43:05,799 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:43:09] 2025-11-27 12:43:08,974 | INFO     | PID=3068351 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:43:09] 2025-11-27 12:43:08,975 | INFO     | .. there are 18 such processes running
[2025-11-27 07:43:09] 2025-11-27 12:43:08,976 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:43:09] 2025-11-27 12:43:08,976 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:43:09] 2025-11-27 12:43:08,976 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:43:09] 2025-11-27 12:43:08,976 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:43:09] 2025-11-27 12:43:08,976 | INFO     | [monitor] control thread has ended
[2025-11-27 07:43:09] 2025-11-27 12:43:09,131 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:43:09] 2025-11-27 12:43:09,154 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:43:09] 2025-11-27 12:43:09,157 [wrapper] pilotpid: 3068351
[2025-11-27 07:43:09] 2025-11-27 12:43:09,161 [wrapper] Pilot exit status: 0
[2025-11-27 07:43:09] 2025-11-27 12:43:09,186 [wrapper] pandaids: 6896716196
[2025-11-27 07:43:09] 2025-11-27 12:43:09,288 [wrapper] cleanup supervisor_pilot 1822994 3068352
[2025-11-27 07:43:09] 2025-11-27 12:43:09,302 [wrapper] Test setup, not cleaning
[2025-11-27 07:43:09] 2025-11-27 12:43:09,323 [wrapper] apfmon messages muted
[2025-11-27 07:43:09] 2025-11-27 12:43:09,337 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:43:09] 2025-11-27 12:43:09,346 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:43:09]  *** Error codes and diagnostics ***
[2025-11-27 07:43:09]     "exeErrorCode": 0,
[2025-11-27 07:43:09]     "exeErrorDiag": "",
[2025-11-27 07:43:09]     "pilotErrorCode": 0,
[2025-11-27 07:43:09]     "pilotErrorDiag": "",
[2025-11-27 07:43:09]  *** Listing of results directory ***
[2025-11-27 07:43:09] total 1312152
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 03:00 pilot3.tar.gz
[2025-11-27 07:43:09] -rwx------. 1 boincer umatlas     36292 Nov 25 03:09 runpilot2-wrapper.sh
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 03:09 queuedata.json
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas       100 Nov 26 10:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:43:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 10:33 run_atlas
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas       105 Nov 26 10:33 job.xml
[2025-11-27 07:43:09] -rw-r--r--. 2 boincer umatlas 411537075 Nov 26 10:33 EVNT.47483658._002137.pool.root.1
[2025-11-27 07:43:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 10:33 start_atlas.sh
[2025-11-27 07:43:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 10:33 shared
[2025-11-27 07:43:09] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 10:33 input.tar.gz
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas         0 Nov 26 10:33 boinc_lockfile
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 10:33 pandaJob.out
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas        57 Nov 26 10:33 setup.sh.local
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas    991855 Nov 26 10:33 agis_schedconf.cvmfs.json
[2025-11-27 07:43:09] drwx------. 5 boincer umatlas      4096 Nov 26 10:33 pilot3
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas       532 Nov 27 07:29 boinc_task_state.xml
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 07:40 init_data.xml
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas 903692586 Nov 27 07:41 HITS.47556161._001210.pool.root.1
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas      1072 Nov 27 07:42 memory_monitor_summary.json
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas   1516240 Nov 27 07:42 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas   2344069 Nov 27 07:42 log.47556161._001210.job.log.tgz.1
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas      8627 Nov 27 07:42 heartbeat.json
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 07:43 boinc_mmap_file
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas        29 Nov 27 07:43 wrapper_checkpoint.txt
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas        95 Nov 27 07:43 pilot_heartbeat.json
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas       823 Nov 27 07:43 pilotlog.txt
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas   9907869 Nov 27 07:43 log.47556161._001210.job.log.1
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas       353 Nov 27 07:43 output.list
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas       620 Nov 27 07:43 runtime_log
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas  12267520 Nov 27 07:43 result.tar.gz
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas       664 Nov 27 07:43 x27MDmSI3h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPOJKDm4rwXDn.diag
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 07:43 runtime_log.err
[2025-11-27 07:43:09] -rw-r--r--. 1 boincer umatlas     21124 Nov 27 07:43 stderr.txt
[2025-11-27 07:43:09] HITS file was successfully produced:
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas 903692586 Nov 27 07:41 shared/HITS.pool.root.1
[2025-11-27 07:43:09]  *** Contents of shared directory: ***
[2025-11-27 07:43:09] total 1296988
[2025-11-27 07:43:09] -rw-r--r--. 2 boincer umatlas 411537075 Nov 26 10:33 ATLAS.root_0
[2025-11-27 07:43:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 10:33 start_atlas.sh
[2025-11-27 07:43:09] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 10:33 input.tar.gz
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas 903692586 Nov 27 07:41 HITS.pool.root.1
[2025-11-27 07:43:09] -rw-------. 1 boincer umatlas  12267520 Nov 27 07:43 result.tar.gz
07:43:10 (3064518): run_atlas exited; CPU time 213786.997213
07:43:10 (3064518): called boinc_finish(0)

</stderr_txt>
]]>

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