Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:18 (25659): wrapper (7.7.26015): starting
00:11:18 (25659): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:11:18] Arguments: --nthreads 8
[2025-11-26 00:11:18] Threads: 8
[2025-11-26 00:11:18] Checking for CVMFS
[2025-11-26 00:11:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:11:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:11:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:11:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:11:19] 2.11.2.0 28705 117406 142176 153310 3 49 10353258 18432000 1885 130560 0 86082182 99.975 5005595 32061 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:11:19] CVMFS is ok
[2025-11-26 00:11:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:11:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:11:19] Further information can be found at the LHC@home message board.
[2025-11-26 00:11:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:11:19] Checking for apptainer binary...
[2025-11-26 00:11:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:11:19] Running /usr/bin/apptainer --version
[2025-11-26 00:11:19] apptainer version 1.3.2-1.el7
[2025-11-26 00:11:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:11:20] c-206-27.aglt2.org
[2025-11-26 00:11:20] apptainer works
[2025-11-26 00:11:20] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:11:20] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:11:20] Starting ATLAS job with PandaID=6896201162
[2025-11-26 00:11:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:32:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:32:32] 2025-11-27 00:31:40,811 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:32:32] 2025-11-27 00:31:40,813 | INFO     | sum of square deviations: 460610109791.2012
[2025-11-26 19:32:32] 2025-11-27 00:31:40,856 | INFO     | sum of deviations: 2206955981862.7153
[2025-11-26 19:32:32] 2025-11-27 00:31:40,856 | INFO     | mean x: 1764168688.6257668
[2025-11-26 19:32:32] 2025-11-27 00:31:40,856 | INFO     | mean y: 2855663.615249781
[2025-11-26 19:32:32] 2025-11-27 00:31:40,856 | INFO     | intersect: -8449938918.21117
[2025-11-26 19:32:32] 2025-11-27 00:31:40,858 | INFO     | chi2: 6.3171963092735215
[2025-11-26 19:32:32] 2025-11-27 00:31:40,860 | INFO     | sum of square deviations: 454581451729.2364
[2025-11-26 19:32:32] 2025-11-27 00:31:40,885 | INFO     | sum of deviations: 2560964909878.0527
[2025-11-26 19:32:32] 2025-11-27 00:31:40,885 | INFO     | mean x: 1764168536.1285212
[2025-11-26 19:32:32] 2025-11-27 00:31:40,885 | INFO     | mean y: 2864613.705105634
[2025-11-26 19:32:32] 2025-11-27 00:31:40,885 | INFO     | intersect: -9935890473.968662
[2025-11-26 19:32:32] 2025-11-27 00:31:40,886 | INFO     | chi2: 3.461076413309006
[2025-11-26 19:32:32] 2025-11-27 00:31:40,886 | INFO     | current chi2=3.461076413309006 (change=45.211827464848405 %)
[2025-11-26 19:32:32] 2025-11-27 00:31:40,887 | INFO     | sum of square deviations: 448605631867.2521
[2025-11-26 19:32:32] 2025-11-27 00:31:40,927 | INFO     | sum of deviations: 2750872480520.89
[2025-11-26 19:32:32] 2025-11-27 00:31:40,928 | INFO     | mean x: 1764168383.6312997
[2025-11-26 19:32:32] 2025-11-27 00:31:40,928 | INFO     | mean y: 2869459.488947834
[2025-11-26 19:32:32] 2025-11-27 00:31:40,928 | INFO     | intersect: -10815100518.588425
[2025-11-26 19:32:32] 2025-11-27 00:31:40,929 | INFO     | chi2: 2.5561756160022093
[2025-11-26 19:32:32] 2025-11-27 00:31:40,930 | INFO     | current chi2=2.5561756160022093 (change=26.14506844827661 %)
[2025-11-26 19:32:32] 2025-11-27 00:31:40,931 | INFO     | sum of square deviations: 442682417642.75037
[2025-11-26 19:32:32] 2025-11-27 00:31:40,972 | INFO     | sum of deviations: 2788712895741.2456
[2025-11-26 19:32:32] 2025-11-27 00:31:40,973 | INFO     | mean x: 1764168231.134103
[2025-11-26 19:32:32] 2025-11-27 00:31:40,973 | INFO     | mean y: 2870430.256660746
[2025-11-26 19:32:32] 2025-11-27 00:31:40,973 | INFO     | intersect: -11110646846.11955
[2025-11-26 19:32:32] 2025-11-27 00:31:40,975 | INFO     | chi2: 2.402061392373905
[2025-11-26 19:32:32] 2025-11-27 00:31:40,975 | INFO     | current chi2=2.402061392373905 (change=6.0290937235890985 %)
[2025-11-26 19:32:32] 2025-11-27 00:31:40,975 | INFO     | right removable region: 1125
[2025-11-26 19:32:32] 2025-11-27 00:31:40,977 | INFO     | sum of square deviations: 454581016189.2365
[2025-11-26 19:32:32] 2025-11-27 00:31:41,018 | INFO     | sum of deviations: 1910845368692.7944
[2025-11-26 19:32:32] 2025-11-27 00:31:41,018 | INFO     | mean x: 1764168841.1285212
[2025-11-26 19:32:32] 2025-11-27 00:31:41,019 | INFO     | mean y: 2863145.6452464787
[2025-11-26 19:32:32] 2025-11-27 00:31:41,019 | INFO     | intersect: -7412875170.754752
[2025-11-26 19:32:32] 2025-11-27 00:31:41,020 | INFO     | chi2: 4.324777824850064
[2025-11-26 19:32:32] 2025-11-27 00:31:41,021 | INFO     | current chi2=4.324777824850064 (change=31.539600589879186 %)
[2025-11-26 19:32:32] 2025-11-27 00:31:41,022 | INFO     | sum of square deviations: 448604968676.0317
[2025-11-26 19:32:32] 2025-11-27 00:31:41,063 | INFO     | sum of deviations: 1809001994337.6736
[2025-11-26 19:32:32] 2025-11-27 00:31:41,063 | INFO     | mean x: 1764168993.6286473
[2025-11-26 19:32:32] 2025-11-27 00:31:41,063 | INFO     | mean y: 2865744.1706454465
[2025-11-26 19:32:32] 2025-11-27 00:31:41,064 | INFO     | intersect: -7111155389.482083
[2025-11-26 19:32:32] 2025-11-27 00:31:41,065 | INFO     | chi2: 4.200852303625926
[2025-11-26 19:32:32] 2025-11-27 00:31:41,065 | INFO     | current chi2=4.200852303625926 (change=2.865477169996215 %)
[2025-11-26 19:32:32] 2025-11-27 00:31:41,066 | INFO     | left removable region: 20
[2025-11-26 19:32:32] 2025-11-27 00:31:41,067 | INFO     | sum of square deviations: 418372926904.9284
[2025-11-26 19:32:32] 2025-11-27 00:31:41,103 | INFO     | sum of deviations: 2245953713104.6997
[2025-11-26 19:32:32] 2025-11-27 00:31:41,103 | INFO     | mean x: 1764168810.638914
[2025-11-26 19:32:32] 2025-11-27 00:31:41,103 | INFO     | mean y: 2884379.7511312217
[2025-11-26 19:32:32] 2025-11-27 00:31:41,104 | INFO     | intersect: -9467712869.717537
[2025-11-26 19:32:32] 2025-11-27 00:31:41,105 | INFO     | chi2: 0.20454782883024744
[2025-11-26 19:32:32] 2025-11-27 00:31:41,105 | INFO     | current memory leak: 5.37 B/s (using 1105 data points, chi2=0.20)
[2025-11-26 19:32:32] 2025-11-27 00:31:41,107 | INFO     | could have reported an average CPU frequency of 2633 MHz (41 samples)
[2025-11-26 19:32:32] 2025-11-27 00:31:41,107 | INFO     | ..............................
[2025-11-26 19:32:32] 2025-11-27 00:31:41,107 | INFO     | . Timing measurements:
[2025-11-26 19:32:32] 2025-11-27 00:31:41,107 | INFO     | . get job = 0 s
[2025-11-26 19:32:32] 2025-11-27 00:31:41,107 | INFO     | . initial setup = 2 s
[2025-11-26 19:32:32] 2025-11-27 00:31:41,108 | INFO     | . payload setup = 5 s
[2025-11-26 19:32:32] 2025-11-27 00:31:41,108 | INFO     | . stage-in = 0 s
[2025-11-26 19:32:32] 2025-11-27 00:31:41,108 | INFO     | . payload execution = 69572 s
[2025-11-26 19:32:32] 2025-11-27 00:31:41,108 | INFO     | . stage-out = 4 s
[2025-11-26 19:32:32] 2025-11-27 00:31:41,108 | INFO     | . log creation = 0 s
[2025-11-26 19:32:32] 2025-11-27 00:31:41,108 | INFO     | ..............................
[2025-11-26 19:32:32] 2025-11-27 00:31:41,211 | INFO     | 
[2025-11-26 19:32:32] 2025-11-27 00:31:41,211 | INFO     | job summary report
[2025-11-26 19:32:32] 2025-11-27 00:31:41,212 | INFO     | --------------------------------------------------
[2025-11-26 19:32:32] 2025-11-27 00:31:41,212 | INFO     | PanDA job id: 6896201162
[2025-11-26 19:32:32] 2025-11-27 00:31:41,212 | INFO     | task id: 47556173
[2025-11-26 19:32:32] 2025-11-27 00:31:41,212 | INFO     | errors: (none)
[2025-11-26 19:32:32] 2025-11-27 00:31:41,212 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:32:32] 2025-11-27 00:31:41,212 | INFO     | pilot state: finished 
[2025-11-26 19:32:32] 2025-11-27 00:31:41,212 | INFO     | transexitcode: 0
[2025-11-26 19:32:32] 2025-11-27 00:31:41,212 | INFO     | exeerrorcode: 0
[2025-11-26 19:32:32] 2025-11-27 00:31:41,212 | INFO     | exeerrordiag: 
[2025-11-26 19:32:32] 2025-11-27 00:31:41,212 | INFO     | exitcode: 0
[2025-11-26 19:32:32] 2025-11-27 00:31:41,213 | INFO     | exitmsg: OK
[2025-11-26 19:32:32] 2025-11-27 00:31:41,213 | INFO     | cpuconsumptiontime: 533574 s
[2025-11-26 19:32:32] 2025-11-27 00:31:41,213 | INFO     | nevents: 1000
[2025-11-26 19:32:32] 2025-11-27 00:31:41,213 | INFO     | neventsw: 0
[2025-11-26 19:32:32] 2025-11-27 00:31:41,213 | INFO     | pid: 3544
[2025-11-26 19:32:32] 2025-11-27 00:31:41,213 | INFO     | pgrp: 3544
[2025-11-26 19:32:32] 2025-11-27 00:31:41,213 | INFO     | corecount: 8
[2025-11-26 19:32:32] 2025-11-27 00:31:41,213 | INFO     | event service: False
[2025-11-26 19:32:32] 2025-11-27 00:31:41,213 | INFO     | sizes: {0: 2284142, 1: 2284341, 5: 2284603, 12: 2284659, 69580: 2340915, 69585: 2349909, 69587: 2350093, 69593: 2350435}
[2025-11-26 19:32:32] 2025-11-27 00:31:41,213 | INFO     | --------------------------------------------------
[2025-11-26 19:32:32] 2025-11-27 00:31:41,214 | INFO     | 
[2025-11-26 19:32:32] 2025-11-27 00:31:41,214 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 19:32:32] 2025-11-27 00:31:41,231 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,231 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,232 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,232 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,232 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,232 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,232 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,232 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,232 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,232 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,232 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,233 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,233 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,233 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,233 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,233 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,233 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,233 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:32:32] 2025-11-27 00:31:41,233 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,233 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:32:32] 2025-11-27 00:31:41,234 | INFO     | job 6896201162 has completed (purged errors)
[2025-11-26 19:32:32] 2025-11-27 00:31:41,234 | INFO     | overall cleanup function is called
[2025-11-26 19:32:32] 2025-11-27 00:31:42,246 | INFO     | --- collectZombieJob: --- 10, [3544]
[2025-11-26 19:32:32] 2025-11-27 00:31:42,246 | INFO     | zombie collector waiting for pid 3544
[2025-11-26 19:32:32] 2025-11-27 00:31:42,247 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:32:32] 2025-11-27 00:31:42,247 | INFO     | collected zombie processes
[2025-11-26 19:32:32] 2025-11-27 00:31:42,247 | INFO     | will attempt to kill all subprocesses of pid=3544
[2025-11-26 19:32:32] 2025-11-27 00:31:42,363 | INFO     | process IDs to be killed: [3544] (in reverse order)
[2025-11-26 19:32:32] 2025-11-27 00:31:42,413 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:32:32] 2025-11-27 00:31:42,414 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:32:32] 2025-11-27 00:31:42,416 | INFO     | did not find any defunct processes belonging to 3544
[2025-11-26 19:32:32] 2025-11-27 00:31:42,419 | INFO     | did not find any defunct processes belonging to 3544
[2025-11-26 19:32:32] 2025-11-27 00:31:42,420 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:32:32] 2025-11-27 00:31:42,420 | INFO     | ready for new job
[2025-11-26 19:32:32] 2025-11-27 00:31:42,420 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:32:32] 2025-11-27 00:31:42,424 | INFO     | ***************************************
[2025-11-26 19:32:32] 2025-11-27 00:31:42,424 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:32:32] 2025-11-27 00:31:42,424 | INFO     | ***************************************
[2025-11-26 19:32:32] 2025-11-27 00:31:42,424 | INFO     | 
[2025-11-26 19:32:32] 2025-11-27 00:31:42,425 | INFO     | architecture information:
[2025-11-26 19:32:32] 2025-11-27 00:31:42,426 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:32:32] 2025-11-27 00:31:42,435 | INFO     | cat /etc/os-release:
[2025-11-26 19:32:32] NAME="CentOS Linux"
[2025-11-26 19:32:32] VERSION="7 (Core)"
[2025-11-26 19:32:32] ID="centos"
[2025-11-26 19:32:32] ID_LIKE="rhel fedora"
[2025-11-26 19:32:32] VERSION_ID="7"
[2025-11-26 19:32:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:32:32] ANSI_COLOR="0;31"
[2025-11-26 19:32:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:32:32] HOME_URL="https://www.centos.org/"
[2025-11-26 19:32:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:32:32] 
[2025-11-26 19:32:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:32:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:32:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:32:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:32:32] 
[2025-11-26 19:32:32] 2025-11-27 00:31:42,435 | INFO     | ***************************************
[2025-11-26 19:32:32] 2025-11-27 00:31:42,939 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 19:32:32] 2025-11-27 00:31:42,955 | INFO     | sufficient remaining disk space (26699890688 B)
[2025-11-26 19:32:32] 2025-11-27 00:31:42,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:32:32] 2025-11-27 00:31:42,956 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:32:32] 2025-11-27 00:31:42,956 | INFO     | update_server=False
[2025-11-26 19:32:32] 2025-11-27 00:31:42,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:32:32] 2025-11-27 00:31:42,956 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:32:32] 2025-11-27 00:31:42,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:32:32] 2025-11-27 00:31:43,040 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 19:32:32] 2025-11-27 00:31:43,040 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 19:32:32] 2025-11-27 00:31:43,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:32:32] 2025-11-27 00:31:43,041 | INFO     | will abort loop
[2025-11-26 19:32:32] 2025-11-27 00:31:43,240 | INFO     | all payload control threads have been joined
[2025-11-26 19:32:32] 2025-11-27 00:31:43,749 | INFO     | all data control threads have been joined
[2025-11-26 19:32:32] 2025-11-27 00:31:43,839 | INFO     | all job control threads have been joined
[2025-11-26 19:32:32] 2025-11-27 00:31:43,962 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:43,962 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,046 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,247 | INFO     | [payload] control thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,262 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,318 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,427 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,543 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,664 | INFO     | [job] validate thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,755 | INFO     | [data] control thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,845 | INFO     | [job] control thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,864 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,941 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:44,987 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:45,422 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:31:45,901 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:32:32] 2025-11-27 00:31:49,907 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:32:32] 2025-11-27 00:32:12,868 | INFO     | PID=29343 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 19:32:32] 2025-11-27 00:32:12,868 | INFO     | .. there are 3 such processes running
[2025-11-26 19:32:32] 2025-11-27 00:32:12,869 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:32:32] 2025-11-27 00:32:12,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:32:32] 2025-11-27 00:32:12,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:32:32] 2025-11-27 00:32:27,258 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:32:32] 2025-11-27 00:32:27,565 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139966043973440)>', '<ExcThread(monitor, started 139965467981568)>']
[2025-11-26 19:32:32] 2025-11-27 00:32:27,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:32:32] 2025-11-27 00:32:27,947 | INFO     | [monitor] control thread has ended
[2025-11-26 19:32:32] 2025-11-27 00:32:32,591 | INFO     | all workflow threads have been joined
[2025-11-26 19:32:32] 2025-11-27 00:32:32,591 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:32:32] 2025-11-27 00:32:32,591 | INFO     | traces error code: 0
[2025-11-26 19:32:32] 2025-11-27 00:32:32,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:32:32] 2025-11-27 00:32:32,716 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:32:32] 2025-11-27 00:32:32,719 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:32:32] 2025-11-27 00:32:32,722 [wrapper] pilotpid: 29343
[2025-11-26 19:32:32] 2025-11-27 00:32:32,724 [wrapper] Pilot exit status: 0
[2025-11-26 19:32:32] 2025-11-27 00:32:32,733 [wrapper] pandaids: 6896201162
[2025-11-26 19:32:32] 2025-11-27 00:32:32,766 [wrapper] cleanup supervisor_pilot 18265 29344
[2025-11-26 19:32:32] 2025-11-27 00:32:32,768 [wrapper] Test setup, not cleaning
[2025-11-26 19:32:32] 2025-11-27 00:32:32,770 [wrapper] apfmon messages muted
[2025-11-26 19:32:32] 2025-11-27 00:32:32,772 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:32:32] 2025-11-27 00:32:32,775 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:32:32]  *** Error codes and diagnostics ***
[2025-11-26 19:32:32]     "exeErrorCode": 0,
[2025-11-26 19:32:32]     "exeErrorDiag": "",
[2025-11-26 19:32:32]     "pilotErrorCode": 0,
[2025-11-26 19:32:32]     "pilotErrorDiag": "",
[2025-11-26 19:32:32]  *** Listing of results directory ***
[2025-11-26 19:32:32] total 1322004
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 14:16 queuedata.json
[2025-11-26 19:32:32] -rwx------ 1 boincer umatlas     36292 Nov 24 14:20 runpilot2-wrapper.sh
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas       100 Nov 26 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:32:32] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 00:11 run_atlas
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas       105 Nov 26 00:11 job.xml
[2025-11-26 19:32:32] -rw-r--r-- 2 boincer umatlas 408588127 Nov 26 00:11 EVNT.47483658._003046.pool.root.1
[2025-11-26 19:32:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 00:11 start_atlas.sh
[2025-11-26 19:32:32] drwxrwx--x 2 boincer umatlas      4096 Nov 26 00:11 shared
[2025-11-26 19:32:32] -rw-r--r-- 2 boincer umatlas    590095 Nov 26 00:11 input.tar.gz
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas         0 Nov 26 00:11 boinc_lockfile
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 00:11 pandaJob.out
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas        57 Nov 26 00:11 setup.sh.local
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas    991877 Nov 26 00:11 agis_schedconf.cvmfs.json
[2025-11-26 19:32:32] drwx------ 5 boincer umatlas      4096 Nov 26 00:11 pilot3
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas       532 Nov 26 19:18 boinc_task_state.xml
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas 917285712 Nov 26 19:30 HITS.47556173._000282.pool.root.1
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas      1067 Nov 26 19:31 memory_monitor_summary.json
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas   1516240 Nov 26 19:31 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas   2311084 Nov 26 19:31 log.47556173._000282.job.log.tgz.1
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas        95 Nov 26 19:31 pilot_heartbeat.json
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas      8649 Nov 26 19:31 heartbeat.json
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas      5954 Nov 26 19:31 init_data.xml
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 19:32 boinc_mmap_file
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas        29 Nov 26 19:32 wrapper_checkpoint.txt
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas      5007 Nov 26 19:32 pilotlog.txt
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas   9655665 Nov 26 19:32 log.47556173._000282.job.log.1
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas       353 Nov 26 19:32 output.list
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas       620 Nov 26 19:32 runtime_log
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas  11991040 Nov 26 19:32 result.tar.gz
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 19:32 runtime_log.err
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas       668 Nov 26 19:32 eMcNDmsHrh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMsLKDmpdlsfn.diag
[2025-11-26 19:32:32] -rw-r--r-- 1 boincer umatlas     21113 Nov 26 19:32 stderr.txt
[2025-11-26 19:32:32] HITS file was successfully produced:
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas 917285712 Nov 26 19:30 shared/HITS.pool.root.1
[2025-11-26 19:32:32]  *** Contents of shared directory: ***
[2025-11-26 19:32:32] total 1307112
[2025-11-26 19:32:32] -rw-r--r-- 2 boincer umatlas 408588127 Nov 26 00:11 ATLAS.root_0
[2025-11-26 19:32:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 00:11 start_atlas.sh
[2025-11-26 19:32:32] -rw-r--r-- 2 boincer umatlas    590095 Nov 26 00:11 input.tar.gz
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas 917285712 Nov 26 19:30 HITS.pool.root.1
[2025-11-26 19:32:32] -rw------- 1 boincer umatlas  11991040 Nov 26 19:32 result.tar.gz
19:32:34 (25659): run_atlas exited; CPU time 532184.383555
19:32:34 (25659): called boinc_finish(0)

</stderr_txt>
]]>

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